Wall clock time and date at job start Sun Mar 29 2020 21:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38352 * 119.90667 * 2 1 4 4 C 1.38570 * 120.28389 * 179.97438 * 3 2 1 5 5 F 1.35100 * 119.95080 * 180.02562 * 4 3 2 6 6 C 1.38188 * 120.10268 * 0.04537 * 4 3 2 7 7 C 1.39625 * 119.81128 * 359.97438 * 6 4 3 8 8 C 1.47670 * 120.13830 * 179.97438 * 7 6 4 9 9 O 1.21497 * 120.00310 * 180.02562 * 8 7 6 10 10 O 1.34737 * 119.99654 * 0.02562 * 8 7 6 11 11 C 1.34851 * 116.99776 * 180.02562 * 10 8 7 12 12 H 1.08004 * 120.00382 * 359.97438 * 11 10 8 13 13 C 1.38811 * 120.00197 * 179.97438 * 11 10 8 14 14 N 1.31414 * 120.00320 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00128 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47153 * 89.99507 * 15 13 11 17 17 H 1.48497 * 109.47349 * 210.00119 * 15 13 11 18 18 H 1.48505 * 109.46791 * 329.99804 * 15 13 11 19 19 C 1.37920 * 119.90564 * 180.02562 * 2 1 3 20 20 H 1.09004 * 109.47391 * 269.97527 * 1 2 3 21 21 H 1.09000 * 109.47387 * 29.97958 * 1 2 3 22 22 H 1.09004 * 109.47251 * 149.98250 * 1 2 3 23 23 H 1.08005 * 119.86147 * 359.97438 * 3 2 1 24 24 H 1.07990 * 120.09339 * 180.25486 * 6 4 3 25 25 H 0.97001 * 120.00377 * 180.02562 * 14 13 11 26 26 H 1.07992 * 120.05652 * 0.02571 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1993 0.0000 4 6 3.5825 1.2084 0.0005 5 9 4.2493 2.3834 0.0011 6 6 4.2834 0.0175 0.0001 7 6 3.5915 -1.1952 -0.0003 8 6 4.3332 -2.4721 -0.0013 9 8 3.7286 -3.5259 -0.0021 10 8 5.6806 -2.4684 -0.0013 11 6 6.2960 -3.6683 -0.0028 12 1 5.7103 -4.5757 -0.0035 13 6 7.6824 -3.7373 -0.0034 14 7 8.2822 -4.9066 -0.0044 15 14 8.6957 -2.1680 -0.0015 16 1 8.9646 -1.7541 1.3991 17 1 9.9825 -2.4087 -0.7024 18 1 7.9452 -1.0934 -0.6997 19 6 2.1946 -1.1956 -0.0005 20 1 -0.3634 -0.0004 1.0277 21 1 -0.3634 0.8901 -0.5135 22 1 -0.3634 -0.8898 -0.5141 23 1 1.6530 2.1324 -0.0004 24 1 5.3633 0.0248 0.0047 25 1 9.2510 -4.9548 -0.0044 26 1 1.6541 -2.1304 -0.0014 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745566428.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:12 Heat of formation + Delta-G solvation = -124.838286 kcal Electronic energy + Delta-G solvation = -14531.528324 eV Core-core repulsion = 11682.156619 eV Total energy + Delta-G solvation = -2849.371706 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.064 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.97697 -41.49633 -39.86569 -37.47594 -34.64534 -33.93302 -31.86931 -28.33133 -27.75023 -25.17529 -22.95130 -21.69851 -20.27554 -19.04146 -17.96521 -17.27506 -17.19639 -16.95184 -16.69144 -16.56865 -15.88231 -14.67708 -14.58873 -14.46718 -14.33945 -14.08427 -13.49102 -13.08142 -12.73589 -12.70239 -12.54684 -12.45469 -12.35804 -11.90023 -11.34006 -10.91085 -10.08876 -9.78316 -8.63185 -6.48163 -0.46059 0.04272 1.28829 1.29477 1.48489 1.57184 2.15494 2.23963 2.50849 2.88739 3.07300 3.59370 3.80907 4.00909 4.11493 4.18307 4.50932 4.66180 4.84365 4.89567 4.94211 5.17066 5.27781 5.32633 5.42539 5.75335 5.80639 6.38394 6.71426 7.44465 8.49218 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.034228 B = 0.008286 C = 0.006695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.855542 B = 3378.425667 C = 4181.137168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.056 4.056 3 C -0.114 4.114 4 C 0.090 3.910 5 F -0.137 7.137 6 C -0.128 4.128 7 C -0.086 4.086 8 C 0.447 3.553 9 O -0.566 6.566 10 O -0.246 6.246 11 C -0.409 4.409 12 H 0.062 0.938 13 C 0.022 3.978 14 N -0.907 5.907 15 Si 0.978 3.022 16 H -0.257 1.257 17 H -0.260 1.260 18 H -0.252 1.252 19 C -0.080 4.080 20 H 0.091 0.909 21 H 0.096 0.904 22 H 0.076 0.924 23 H 0.180 0.820 24 H 0.135 0.865 25 H 0.293 0.707 26 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.174 16.448 0.033 20.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.056 4.056 3 C -0.132 4.132 4 C 0.071 3.929 5 F -0.116 7.116 6 C -0.147 4.147 7 C -0.087 4.087 8 C 0.296 3.704 9 O -0.463 6.463 10 O -0.155 6.155 11 C -0.485 4.485 12 H 0.080 0.920 13 C -0.180 4.180 14 N -0.546 5.546 15 Si 0.797 3.203 16 H -0.181 1.181 17 H -0.184 1.184 18 H -0.176 1.176 19 C -0.099 4.099 20 H 0.110 0.890 21 H 0.115 0.885 22 H 0.095 0.905 23 H 0.197 0.803 24 H 0.153 0.847 25 H 0.103 0.897 26 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.086 16.082 0.028 20.117 hybrid contribution 1.052 -0.396 0.018 1.124 sum -11.033 15.687 0.046 19.178 Atomic orbital electron populations 1.20926 0.86623 1.04849 1.04309 1.20035 0.98649 0.90181 0.96749 1.21582 0.90934 1.00899 0.99783 1.17524 0.91053 0.80141 1.04154 1.91509 1.81056 1.44910 1.94076 1.21401 1.01549 0.90880 1.00880 1.18921 0.94114 0.89052 1.06609 1.21490 0.81523 0.89968 0.77459 1.90640 1.69656 1.34937 1.51078 1.83539 1.20078 1.34320 1.77571 1.20402 0.91291 0.82191 1.54567 0.92011 1.25548 0.96204 1.02331 0.93896 1.69669 1.11817 1.26209 1.46908 0.85165 0.77569 0.77506 0.80079 1.18147 1.18412 1.17570 1.21354 0.90955 1.00311 0.97239 0.89025 0.88493 0.90516 0.80276 0.84689 0.89726 0.84320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.01 71.24 0.71 -0.66 15 2 C -0.06 -1.18 5.87 -19.91 -0.12 -1.30 15 3 C -0.11 -2.27 9.67 22.38 0.22 -2.05 15 4 C 0.09 2.42 7.29 22.34 0.16 2.58 15 5 F -0.14 -3.61 17.26 44.97 0.78 -2.83 15 6 C -0.13 -4.34 9.60 22.59 0.22 -4.12 15 7 C -0.09 -3.28 5.87 -20.10 -0.12 -3.40 15 8 C 0.45 22.76 7.84 70.31 0.55 23.31 15 9 O -0.57 -32.15 15.59 19.84 0.31 -31.84 15 10 O -0.25 -13.70 7.82 11.33 0.09 -13.61 15 11 C -0.41 -25.68 10.11 67.96 0.69 -24.99 15 12 H 0.06 4.37 7.09 -2.91 -0.02 4.35 15 13 C 0.02 1.26 5.50 84.89 0.47 1.73 15 14 N -0.91 -54.86 13.96 21.63 0.30 -54.56 15 15 Si 0.98 43.95 28.62 68.60 1.96 45.92 15 16 H -0.26 -10.94 7.11 99.48 0.71 -10.23 15 17 H -0.26 -10.78 7.11 99.48 0.71 -10.07 15 18 H -0.25 -10.96 7.11 99.48 0.71 -10.26 15 19 C -0.08 -2.43 9.24 22.54 0.21 -2.22 15 20 H 0.09 0.93 8.14 -2.38 -0.02 0.91 15 21 H 0.10 0.74 8.08 -2.39 -0.02 0.72 15 22 H 0.08 0.95 8.08 -2.39 -0.02 0.93 15 23 H 0.18 2.12 8.06 -2.91 -0.02 2.10 15 24 H 0.14 4.85 7.61 -2.92 -0.02 4.83 15 25 H 0.29 15.85 8.31 -92.71 -0.77 15.08 15 26 H 0.14 4.24 7.65 -2.91 -0.02 4.22 15 Total: -1.00 -73.09 248.59 7.63 -65.46 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: 1.20 Total: 2.58 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 2.99 Total: -11.12 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.30 Total: -54.56 kcal Atomic # 8 Polarization: -45.84 SS G_CDS: 0.40 Total: -45.45 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.78 Total: -2.83 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.96 Total: 45.92 kcal Total: -73.09 7.63 -65.46 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745566428.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.374 kcal (2) G-P(sol) polarization free energy of solvation -73.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds