Wall clock time and date at job start Sun Mar 29 2020 21:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34172 * 125.70844 * 2 1 4 4 C 1.38549 * 107.34115 * 179.71954 * 3 2 1 5 5 C 1.47031 * 126.47574 * 180.22031 * 4 3 2 6 6 O 1.21502 * 120.00364 * 0.02562 * 5 4 3 7 7 C 1.48786 * 119.99779 * 180.02562 * 5 4 3 8 8 O 1.21398 * 120.00128 * 359.97438 * 7 5 4 9 9 O 1.34519 * 119.99965 * 180.02562 * 7 5 4 10 10 C 1.34473 * 117.00118 * 180.02562 * 9 7 5 11 11 H 1.08004 * 120.00184 * 359.97438 * 10 9 7 12 12 C 1.39337 * 120.00221 * 179.97438 * 10 9 7 13 13 N 1.31085 * 119.99755 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00152 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47110 * 89.99725 * 14 12 10 16 16 H 1.48500 * 109.47010 * 210.00001 * 14 12 10 17 17 H 1.48501 * 109.46990 * 329.99861 * 14 12 10 18 18 C 1.41520 * 107.04619 * 0.24543 * 4 3 2 19 19 N 1.30370 * 108.00120 * 359.97438 * 18 4 3 20 20 H 1.09005 * 109.46819 * 90.00140 * 1 2 3 21 21 H 1.09001 * 109.46977 * 209.99691 * 1 2 3 22 22 H 1.08998 * 109.46742 * 330.00074 * 1 2 3 23 23 H 1.08002 * 126.33199 * 359.97438 * 3 2 1 24 24 H 0.97001 * 119.99770 * 179.97438 * 13 12 10 25 25 H 1.07996 * 126.00238 * 180.02562 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2482 1.0895 0.0000 4 6 3.5631 0.6529 0.0065 5 6 4.7651 1.4995 0.0134 6 8 4.6560 2.7097 0.0142 7 6 6.1153 0.8744 0.0193 8 8 6.2244 -0.3347 0.0189 9 8 7.2151 1.6490 0.0261 10 6 8.4041 1.0209 0.0307 11 1 8.4448 -0.0584 0.0292 12 6 9.5838 1.7625 0.0373 13 7 9.5344 3.0724 0.0386 14 14 11.2355 0.8900 0.0444 15 1 11.6799 0.6604 -1.3538 16 1 12.2360 1.7301 0.7503 17 1 11.1034 -0.4141 0.7423 18 6 3.5305 -0.7619 0.0046 19 7 2.2816 -1.1361 -0.0020 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.9152 2.1169 -0.0004 24 1 10.3556 3.5886 0.0436 25 1 4.3893 -1.4167 0.0088 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748434667.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:29 Heat of formation + Delta-G solvation = -25.700606 kcal Electronic energy + Delta-G solvation = -14500.721066 eV Core-core repulsion = 11675.568255 eV Total energy + Delta-G solvation = -2825.152812 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.063 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.15761 -39.24267 -37.66573 -35.30396 -33.32230 -32.35055 -30.21608 -27.57712 -26.08871 -24.23971 -21.62487 -20.81936 -19.25792 -17.87960 -17.19416 -16.42265 -15.63535 -15.30227 -14.85159 -14.67816 -14.23117 -14.09321 -13.24157 -13.08536 -12.72070 -12.56969 -12.53192 -11.82018 -11.25662 -10.97301 -10.51322 -10.46897 -10.25488 -9.87956 -9.47275 -8.73247 -8.67926 -8.56112 -6.58261 -4.17504 1.26065 2.08834 2.40514 2.94422 3.12239 3.16857 3.20152 3.66035 4.14886 4.15434 4.53398 4.80398 4.92767 5.05422 5.16537 5.27924 5.42373 5.66191 6.00564 6.36908 6.74228 6.83522 7.24244 7.66243 7.78295 7.91298 8.60194 8.87906 9.72351 10.57537 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.070721 B = 0.006034 C = 0.005576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.826494 B = 4639.535174 C = 5020.212575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.370 5.370 3 C 0.123 3.877 4 C -0.299 4.299 5 C 0.447 3.553 6 O -0.440 6.440 7 C 0.345 3.655 8 O -0.542 6.542 9 O -0.175 6.175 10 C -0.377 4.377 11 H 0.104 0.896 12 C 0.044 3.956 13 N -0.837 5.837 14 Si 0.949 3.051 15 H -0.270 1.270 16 H -0.276 1.276 17 H -0.263 1.263 18 C 0.117 3.883 19 N -0.315 5.315 20 H 0.077 0.923 21 H 0.091 0.909 22 H 0.089 0.911 23 H 0.188 0.812 24 H 0.276 0.724 25 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.480 -3.565 0.017 13.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.148 5.148 3 C -0.029 4.029 4 C -0.312 4.312 5 C 0.323 3.677 6 O -0.315 6.315 7 C 0.193 3.807 8 O -0.443 6.443 9 O -0.079 6.079 10 C -0.453 4.453 11 H 0.122 0.878 12 C -0.164 4.164 13 N -0.472 5.472 14 Si 0.773 3.227 15 H -0.195 1.195 16 H -0.201 1.201 17 H -0.187 1.187 18 C -0.070 4.070 19 N -0.134 5.134 20 H 0.096 0.904 21 H 0.110 0.890 22 H 0.108 0.892 23 H 0.205 0.795 24 H 0.086 0.914 25 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -14.340 -4.009 0.019 14.890 hybrid contribution 1.284 0.349 -0.018 1.331 sum -13.056 -3.660 0.002 13.559 Atomic orbital electron populations 1.21934 0.73893 1.04746 1.03660 1.48441 1.07115 1.04206 1.55052 1.23134 0.90277 0.93678 0.95775 1.20511 0.92784 0.94699 1.23178 1.20547 0.86660 0.87436 0.73085 1.90565 1.88857 1.16195 1.35854 1.22962 0.87229 0.86496 0.84033 1.90492 1.86980 1.15263 1.51538 1.83851 1.13567 1.39093 1.71397 1.21564 0.79296 0.93357 1.51068 0.87827 1.25604 0.99584 0.95560 0.95623 1.69873 1.29756 1.05315 1.42223 0.85583 0.78999 0.79133 0.79008 1.19541 1.20077 1.18686 1.24847 0.94808 0.94544 0.92815 1.77208 1.02384 1.07281 1.26576 0.90426 0.88991 0.89238 0.79468 0.91377 0.77177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.70 11.44 59.85 0.68 1.39 15 2 N -0.37 -4.78 3.98 -67.47 -0.27 -5.04 15 3 C 0.12 1.72 11.32 -16.41 -0.19 1.54 15 4 C -0.30 -5.44 6.12 -104.97 -0.64 -6.08 15 5 C 0.45 9.90 7.18 -31.66 -0.23 9.67 15 6 O -0.44 -10.35 17.52 -8.23 -0.14 -10.49 15 7 C 0.35 8.96 7.92 35.09 0.28 9.24 15 8 O -0.54 -13.99 13.47 -19.19 -0.26 -14.25 15 9 O -0.17 -5.21 9.58 -25.11 -0.24 -5.45 15 10 C -0.38 -11.07 9.66 31.14 0.30 -10.77 15 11 H 0.10 2.97 6.86 -52.48 -0.36 2.61 15 12 C 0.04 1.23 5.50 -17.46 -0.10 1.14 15 13 N -0.84 -24.34 13.66 55.51 0.76 -23.58 15 14 Si 0.95 20.61 29.55 -169.99 -5.02 15.58 15 15 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 16 H -0.28 -5.74 7.11 56.52 0.40 -5.34 15 17 H -0.26 -5.57 7.11 56.52 0.40 -5.17 15 18 C 0.12 2.07 11.13 -16.92 -0.19 1.88 15 19 N -0.31 -5.06 12.48 30.90 0.39 -4.67 15 20 H 0.08 0.44 8.14 -51.93 -0.42 0.02 15 21 H 0.09 0.59 8.14 -51.93 -0.42 0.17 15 22 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 15 23 H 0.19 1.99 8.06 -52.49 -0.42 1.56 15 24 H 0.28 7.23 8.30 -40.82 -0.34 6.90 15 25 H 0.21 3.82 6.25 -52.49 -0.33 3.49 15 LS Contribution 245.72 15.07 3.70 3.70 Total: -1.00 -34.59 245.72 -2.68 -37.27 By element: Atomic # 1 Polarization: 0.44 SS G_CDS: -1.51 Total: -1.07 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -0.08 Total: 8.00 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.88 Total: -33.30 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.64 Total: -30.18 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -34.59 -2.68 -37.27 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748434667.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.566 kcal (2) G-P(sol) polarization free energy of solvation -34.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds