Wall clock time and date at job start Sun Mar 29 2020 21:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86810 * 119.99725 * 2 1 4 4 H 1.48498 * 109.47093 * 270.00367 * 3 2 1 5 5 H 1.48500 * 109.46823 * 30.00495 * 3 2 1 6 6 H 1.48499 * 109.46973 * 150.00185 * 3 2 1 7 7 C 1.37876 * 120.00377 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99873 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00171 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47221 * 180.02562 * 9 7 2 11 11 O 1.45196 * 109.47070 * 180.02562 * 10 9 7 12 12 C 1.34234 * 116.99938 * 179.97438 * 11 10 9 13 13 O 1.20822 * 119.99973 * 0.02562 * 12 11 10 14 14 C 1.50700 * 120.00068 * 179.97438 * 12 11 10 15 15 C 1.50697 * 109.47266 * 180.02562 * 14 12 11 16 16 C 1.34508 * 125.79205 * 89.99904 * 15 14 12 17 17 C 1.41386 * 106.84245 * 180.02562 * 16 15 14 18 18 C 1.34515 * 106.83707 * 0.02562 * 17 16 15 19 19 O 1.34299 * 125.78541 * 269.69025 * 15 14 12 20 20 H 0.96994 * 120.00157 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.46835 * 59.99792 * 9 7 2 22 22 H 1.08999 * 109.47176 * 300.00301 * 9 7 2 23 23 H 1.08996 * 109.47090 * 59.99931 * 10 9 7 24 24 H 1.08999 * 109.47084 * 300.00104 * 10 9 7 25 25 H 1.09004 * 109.46932 * 300.00373 * 14 12 11 26 26 H 1.08997 * 109.47392 * 59.99712 * 14 12 11 27 27 H 1.08004 * 126.58159 * 0.03376 * 16 15 14 28 28 H 1.07995 * 126.57789 * 179.97438 * 17 16 15 29 29 H 1.07996 * 125.78671 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0023 11 8 5.4736 -2.6363 -0.0022 12 6 6.0831 -3.8323 -0.0027 13 8 5.4251 -4.8456 -0.0035 14 6 7.5881 -3.9111 -0.0032 15 6 8.0154 -5.3562 -0.0043 16 6 8.2381 -6.1099 -1.0958 17 6 8.6170 -7.3927 -0.6376 18 6 8.6025 -7.3462 0.7066 19 8 8.2442 -6.1083 1.0846 20 1 -0.4850 0.8400 -0.0004 21 1 3.8752 -0.6803 0.8888 22 1 3.8746 -0.6799 -0.8911 23 1 3.6580 -3.1496 -0.8924 24 1 3.6587 -3.1508 0.8875 25 1 7.9774 -3.4168 -0.8933 26 1 7.9781 -3.4171 0.8866 27 1 8.1455 -5.7955 -2.1250 28 1 8.8687 -8.2462 -1.2495 29 1 8.8442 -8.1639 1.3694 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767513463.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:02 Heat of formation + Delta-G solvation = -79.527218 kcal Electronic energy + Delta-G solvation = -14438.074754 eV Core-core repulsion = 11714.128189 eV Total energy + Delta-G solvation = -2723.946565 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.67751 -39.99955 -36.30946 -33.40318 -33.25491 -32.32732 -30.72925 -27.58117 -25.11163 -21.88942 -21.71312 -20.66252 -20.19720 -17.66950 -17.49072 -16.74198 -16.27174 -16.04624 -15.43725 -14.61096 -14.22179 -13.93725 -13.04242 -12.94012 -12.91320 -12.82170 -12.43756 -11.99910 -11.49087 -11.30341 -10.71933 -10.61553 -10.05823 -9.99885 -9.94415 -9.72863 -9.36548 -8.63671 -8.61044 -6.14015 -4.15478 1.53928 2.43415 2.45418 2.78084 3.26813 3.28088 3.34527 3.38515 4.37363 4.39828 4.84316 4.90332 5.05811 5.13544 5.19368 5.20036 5.67651 5.79050 5.92221 5.95104 5.97434 6.37140 6.42902 6.74807 7.00366 7.16360 7.20020 7.60787 8.06566 8.38381 8.87581 9.45267 10.98512 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.074907 B = 0.004609 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.708581 B = 6073.526937 C = 6248.707299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.083 3.917 11 O -0.360 6.360 12 C 0.455 3.545 13 O -0.504 6.504 14 C -0.035 4.035 15 C -0.001 4.001 16 C -0.192 4.192 17 C -0.214 4.214 18 C -0.036 4.036 19 O -0.172 6.172 20 H 0.266 0.734 21 H 0.028 0.972 22 H 0.024 0.976 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.134 0.866 26 H 0.122 0.878 27 H 0.149 0.851 28 H 0.148 0.852 29 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.182 -9.524 -0.393 21.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.709 3.291 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.047 4.047 10 C 0.010 3.990 11 O -0.276 6.276 12 C 0.297 3.703 13 O -0.392 6.392 14 C -0.072 4.072 15 C -0.051 4.051 16 C -0.212 4.212 17 C -0.233 4.233 18 C -0.104 4.104 19 O -0.068 6.068 20 H 0.076 0.924 21 H 0.047 0.953 22 H 0.042 0.958 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.152 0.848 26 H 0.140 0.860 27 H 0.166 0.834 28 H 0.166 0.834 29 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 18.734 -9.575 -0.095 21.039 hybrid contribution 0.163 0.549 -0.224 0.615 sum 18.897 -9.026 -0.318 20.944 Atomic orbital electron populations 1.69894 1.06288 1.27227 1.50047 1.24946 0.94781 0.99210 0.94118 0.86738 0.80416 0.83237 0.78731 1.20052 1.21161 1.18748 1.20842 0.88270 0.95060 1.52446 0.90656 1.19631 0.97018 0.90096 0.97923 1.23416 0.72000 1.01657 1.01897 1.86467 1.26504 1.31743 1.82923 1.23209 0.91151 0.82433 0.73509 1.90686 1.67118 1.36622 1.44778 1.19655 0.90022 0.89720 1.07803 1.21500 1.05347 0.93663 0.84638 1.21577 1.06303 0.93896 0.99381 1.21806 1.07846 0.98859 0.94839 1.24019 1.04403 0.85821 0.96171 1.83993 1.66794 1.21117 1.34846 0.92416 0.95327 0.95759 0.91618 0.91630 0.84787 0.85992 0.83361 0.83388 0.78051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.96 55.43 0.77 -26.57 15 2 C 0.07 2.07 5.47 -17.82 -0.10 1.98 15 3 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 15 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 15 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 6 H -0.26 -6.10 6.54 56.52 0.37 -5.73 15 7 C -0.53 -15.03 9.66 -34.44 -0.33 -15.36 15 8 H 0.08 2.30 7.99 -52.49 -0.42 1.88 15 9 C -0.01 -0.22 4.42 -27.88 -0.12 -0.35 15 10 C 0.08 1.77 5.40 37.16 0.20 1.97 15 11 O -0.36 -6.65 10.22 -39.27 -0.40 -7.06 15 12 C 0.46 7.55 7.95 36.01 0.29 7.84 15 13 O -0.50 -10.10 15.78 -18.75 -0.30 -10.39 15 14 C -0.03 -0.39 6.35 -29.04 -0.18 -0.58 15 15 C 0.00 -0.02 5.82 -35.63 -0.21 -0.22 15 16 C -0.19 -2.29 10.81 -39.70 -0.43 -2.72 15 17 C -0.21 -2.27 10.91 -39.70 -0.43 -2.70 15 18 C -0.04 -0.38 12.09 29.42 0.36 -0.02 15 19 O -0.17 -2.26 10.65 5.71 0.06 -2.20 15 20 H 0.27 7.55 8.31 -40.82 -0.34 7.21 15 21 H 0.03 0.68 7.20 -51.93 -0.37 0.31 15 22 H 0.02 0.57 7.57 -51.93 -0.39 0.17 15 23 H 0.07 1.41 8.13 -51.93 -0.42 0.99 15 24 H 0.07 1.42 8.13 -51.93 -0.42 1.00 15 25 H 0.13 1.09 8.14 -51.93 -0.42 0.67 15 26 H 0.12 1.11 8.14 -51.93 -0.42 0.69 15 27 H 0.15 1.50 8.06 -52.48 -0.42 1.08 15 28 H 0.15 1.19 8.06 -52.49 -0.42 0.76 15 29 H 0.20 1.25 8.06 -52.49 -0.42 0.82 15 LS Contribution 265.50 15.07 4.00 4.00 Total: -1.00 -33.59 265.50 -4.81 -38.40 By element: Atomic # 1 Polarization: 0.66 SS G_CDS: -3.31 Total: -2.65 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -0.96 Total: -10.17 kcal Atomic # 7 Polarization: -27.35 SS G_CDS: 0.77 Total: -26.57 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.64 Total: -19.64 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -33.59 -4.81 -38.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767513463.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.131 kcal (2) G-P(sol) polarization free energy of solvation -33.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds