Wall clock time and date at job start Sun Mar 29 2020 21:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37830 * 120.06821 * 2 1 4 4 C 1.38653 * 120.13057 * 179.97438 * 3 2 1 5 5 F 1.35095 * 119.87341 * 180.02562 * 4 3 2 6 6 C 1.38699 * 120.25579 * 359.73465 * 4 3 2 7 7 C 1.37794 * 120.12420 * 0.54340 * 6 4 3 8 8 C 1.39720 * 120.06259 * 179.97438 * 2 1 3 9 9 C 1.47538 * 120.12861 * 0.04546 * 8 2 1 10 10 O 1.21521 * 119.99926 * 353.74333 * 9 8 2 11 11 O 1.34750 * 120.00257 * 173.74167 * 9 8 2 12 12 C 1.34857 * 116.99983 * 180.02562 * 11 9 8 13 13 H 1.08001 * 120.00388 * 0.02562 * 12 11 9 14 14 C 1.38805 * 119.99905 * 180.02562 * 12 11 9 15 15 N 1.31415 * 120.00067 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 120.00182 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46788 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47027 * 119.99730 * 16 14 12 19 19 H 1.48492 * 109.47024 * 239.99929 * 16 14 12 20 20 H 1.09001 * 109.47015 * 263.43446 * 1 2 3 21 21 H 1.09002 * 109.46983 * 23.43109 * 1 2 3 22 22 H 1.08995 * 109.47224 * 143.43176 * 1 2 3 23 23 H 1.08003 * 119.93149 * 359.96092 * 3 2 1 24 24 H 1.07994 * 119.93965 * 180.27861 * 6 4 3 25 25 H 1.07999 * 120.06303 * 179.72184 * 7 6 4 26 26 H 0.97001 * 120.00151 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1928 0.0000 4 6 3.5841 1.1943 0.0005 5 9 4.2557 2.3665 0.0011 6 6 4.2842 -0.0030 0.0066 7 6 3.6045 -1.2016 0.0009 8 6 2.2069 -1.2093 0.0005 9 6 1.4735 -2.4894 0.0001 10 8 0.2636 -2.4966 0.1140 11 8 2.1451 -3.6507 -0.1266 12 6 1.4147 -4.7843 -0.1199 13 1 0.3408 -4.7342 -0.0165 14 6 2.0430 -6.0156 -0.2458 15 7 3.3497 -6.0766 -0.3720 16 14 1.0314 -7.5859 -0.2358 17 1 -0.4063 -7.2475 -0.0815 18 1 1.2347 -8.3139 -1.5140 19 1 1.4615 -8.4446 0.8968 20 1 -0.3633 -0.1175 1.0209 21 1 -0.3633 0.9429 -0.4087 22 1 -0.3633 -0.8253 -0.6122 23 1 1.6575 2.1281 -0.0006 24 1 5.3641 0.0042 0.0116 25 1 4.1507 -2.1333 0.0011 26 1 3.7888 -6.9370 -0.4604 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771408555.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:03 Heat of formation + Delta-G solvation = -103.804150 kcal Electronic energy + Delta-G solvation = -14620.040447 eV Core-core repulsion = 11771.580850 eV Total energy + Delta-G solvation = -2848.459597 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.064 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.80598 -39.65903 -38.02889 -35.28980 -32.48722 -32.11699 -30.56855 -27.08410 -25.44328 -23.25429 -21.76693 -20.22298 -17.83294 -17.21956 -16.95791 -16.02367 -15.52101 -15.19146 -14.64691 -14.36896 -14.05168 -13.25140 -13.12860 -13.02783 -12.83028 -12.13721 -11.79549 -11.57610 -11.48059 -11.23732 -10.80305 -10.49303 -10.44378 -9.90059 -8.90568 -8.72271 -8.67653 -8.41304 -6.52424 -4.14767 1.01535 1.45213 3.05321 3.14637 3.22053 3.32989 3.85997 4.16686 4.34488 4.47880 4.91774 4.99608 5.08132 5.34395 5.49130 5.80920 5.91736 6.05890 6.14563 6.30410 6.38370 6.53146 6.67668 6.94817 7.08893 7.33028 7.85822 8.63514 8.96485 9.75574 10.65217 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.048181 B = 0.006944 C = 0.006093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.006790 B = 4031.204807 C = 4594.001171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.007 4.007 3 C -0.171 4.171 4 C 0.109 3.891 5 F -0.143 7.143 6 C -0.173 4.173 7 C -0.040 4.040 8 C -0.103 4.103 9 C 0.432 3.568 10 O -0.546 6.546 11 O -0.205 6.205 12 C -0.374 4.374 13 H 0.099 0.901 14 C 0.041 3.959 15 N -0.858 5.858 16 Si 0.945 3.055 17 H -0.264 1.264 18 H -0.275 1.275 19 H -0.275 1.275 20 H 0.076 0.924 21 H 0.053 0.947 22 H 0.102 0.898 23 H 0.136 0.864 24 H 0.137 0.863 25 H 0.151 0.849 26 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.305 9.817 0.362 9.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.008 4.008 3 C -0.190 4.190 4 C 0.090 3.910 5 F -0.122 7.122 6 C -0.192 4.192 7 C -0.058 4.058 8 C -0.105 4.105 9 C 0.281 3.719 10 O -0.445 6.445 11 O -0.112 6.112 12 C -0.449 4.449 13 H 0.117 0.883 14 C -0.164 4.164 15 N -0.494 5.494 16 Si 0.769 3.231 17 H -0.188 1.188 18 H -0.201 1.201 19 H -0.201 1.201 20 H 0.095 0.905 21 H 0.072 0.928 22 H 0.121 0.879 23 H 0.154 0.846 24 H 0.155 0.845 25 H 0.169 0.831 26 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.205 9.664 0.364 9.673 hybrid contribution -0.125 -0.504 0.024 0.520 sum 0.081 9.159 0.387 9.168 Atomic orbital electron populations 1.21100 0.89497 1.02916 1.03984 1.19836 0.97136 0.90429 0.93377 1.20848 0.92005 0.98871 1.07280 1.17890 0.90171 0.81044 1.01892 1.91469 1.80629 1.46216 1.93855 1.21061 1.00866 0.90933 1.06302 1.21489 0.93255 0.98455 0.92647 1.19356 0.93376 0.91763 1.05963 1.20590 0.86077 0.85005 0.80254 1.90577 1.15066 1.87491 1.51409 1.83890 1.39893 1.13136 1.74243 1.21373 0.92446 0.80495 1.50635 0.88299 1.25393 0.96184 0.98703 0.96086 1.69977 1.08155 1.26422 1.44869 0.85579 0.79568 0.79722 0.78219 1.18817 1.20071 1.20078 0.90538 0.92776 0.87941 0.84609 0.84518 0.83098 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.91 8.73 36.00 0.31 -1.60 15 2 C -0.01 -0.12 5.91 -104.22 -0.62 -0.74 15 3 C -0.17 -2.53 9.64 -39.58 -0.38 -2.91 15 4 C 0.11 1.63 7.31 -39.26 -0.29 1.35 15 5 F -0.14 -2.04 17.26 2.25 0.04 -2.00 15 6 C -0.17 -2.61 10.01 -39.57 -0.40 -3.01 15 7 C -0.04 -0.72 9.61 -39.17 -0.38 -1.09 15 8 C -0.10 -2.07 5.87 -104.98 -0.62 -2.69 15 9 C 0.43 10.67 7.76 34.52 0.27 10.93 15 10 O -0.55 -14.06 12.59 -19.28 -0.24 -14.30 15 11 O -0.20 -5.72 9.01 -21.70 -0.20 -5.92 15 12 C -0.37 -10.74 9.65 30.94 0.30 -10.44 15 13 H 0.10 2.85 6.86 -52.49 -0.36 2.49 15 14 C 0.04 1.13 5.50 -17.52 -0.10 1.03 15 15 N -0.86 -24.31 13.67 55.49 0.76 -23.56 15 16 Si 0.94 20.67 29.55 -169.99 -5.02 15.65 15 17 H -0.26 -5.70 7.11 56.52 0.40 -5.30 15 18 H -0.28 -5.84 7.11 56.52 0.40 -5.43 15 19 H -0.28 -5.84 7.11 56.52 0.40 -5.44 15 20 H 0.08 1.22 8.14 -51.93 -0.42 0.80 15 21 H 0.05 0.69 8.04 -51.93 -0.42 0.27 15 22 H 0.10 1.92 5.85 -51.93 -0.30 1.62 15 23 H 0.14 1.63 8.06 -52.48 -0.42 1.21 15 24 H 0.14 1.71 8.06 -52.49 -0.42 1.29 15 25 H 0.15 2.80 7.62 -52.49 -0.40 2.40 15 26 H 0.27 7.01 8.31 -40.82 -0.34 6.68 15 LS Contribution 244.33 15.07 3.68 3.68 Total: -1.00 -30.26 244.33 -4.76 -35.02 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -1.88 Total: 0.59 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -1.89 Total: -9.17 kcal Atomic # 7 Polarization: -24.31 SS G_CDS: 0.76 Total: -23.56 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.44 Total: -20.22 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -30.26 -4.76 -35.02 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771408555.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.785 kcal (2) G-P(sol) polarization free energy of solvation -30.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds