Wall clock time and date at job start Sun Mar 29 2020 21:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86803 * 119.99942 * 2 1 4 4 H 1.48504 * 109.46768 * 239.99758 * 3 2 1 5 5 H 1.48498 * 109.47326 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 120.00035 * 3 2 1 7 7 C 1.40050 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00087 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99840 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00147 * 179.97438 * 9 7 2 12 12 N 1.40105 * 119.99775 * 180.27459 * 11 9 7 13 13 C 1.39837 * 119.99672 * 179.72192 * 12 11 9 14 14 C 1.38832 * 120.08117 * 0.02562 * 13 12 11 15 15 C 1.38160 * 119.95009 * 179.97438 * 14 13 12 16 16 C 1.38272 * 120.11103 * 359.97438 * 15 14 13 17 17 C 1.38290 * 120.16115 * 0.02581 * 16 15 14 18 18 C 1.38285 * 120.05063 * 359.70393 * 17 16 15 19 19 F 1.35093 * 120.05817 * 180.29727 * 18 17 16 20 20 H 0.96996 * 120.00325 * 0.02562 * 1 2 3 21 21 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 22 22 H 0.97000 * 119.99844 * 359.72383 * 12 11 9 23 23 H 1.07997 * 120.02907 * 359.95185 * 14 13 12 24 24 H 1.08000 * 119.94185 * 179.97438 * 15 14 13 25 25 H 1.07998 * 119.92246 * 180.02562 * 16 15 14 26 26 H 1.08004 * 119.97556 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0944 1.6963 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0944 1.6965 1.2124 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2128 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 7 1.2485 -4.8610 -0.0053 13 6 1.9477 -6.0720 -0.0112 14 6 3.3360 -6.0739 -0.0107 15 6 4.0241 -7.2720 -0.0160 16 6 3.3324 -8.4692 -0.0212 17 6 1.9495 -8.4727 -0.0217 18 6 1.2540 -7.2775 -0.0107 19 9 -0.0969 -7.2807 -0.0051 20 1 -0.4850 0.8400 -0.0004 21 1 2.9190 -3.6476 0.0002 22 1 0.2785 -4.8610 -0.0052 23 1 3.8778 -5.1397 -0.0066 24 1 5.1041 -7.2733 -0.0160 25 1 3.8734 -9.4039 -0.0249 26 1 1.4122 -9.4096 -0.0261 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773454964.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:18 Heat of formation + Delta-G solvation = -23.552210 kcal Electronic energy + Delta-G solvation = -14445.443682 eV Core-core repulsion = 11632.756821 eV Total energy + Delta-G solvation = -2812.686861 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.070 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.46715 -39.02715 -37.44417 -34.82108 -32.65414 -31.05024 -30.31392 -27.94560 -25.95093 -22.73631 -21.87907 -20.25869 -18.45839 -17.01629 -16.71312 -16.26434 -15.43210 -15.31327 -15.04337 -14.41093 -14.07817 -13.38385 -13.37481 -12.83028 -12.60275 -12.26006 -11.63319 -11.45747 -11.19969 -10.95612 -10.75621 -10.69828 -10.42560 -9.04774 -8.68835 -8.45639 -7.99318 -6.51577 -6.40963 -4.86867 1.42250 1.68335 2.89858 3.06599 3.12563 3.16900 3.89803 4.01805 4.38312 4.53592 4.94971 5.07248 5.20512 5.48868 5.56674 5.65126 6.02581 6.19344 6.36465 6.47526 6.68752 7.03419 7.23966 7.27261 7.86839 8.10565 8.53722 8.79570 9.15220 10.34422 10.52225 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.052817 B = 0.006158 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.000560 B = 4545.857740 C = 5066.008327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.087 3.913 3 Si 0.919 3.081 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.534 4.534 8 H 0.074 0.926 9 C 0.553 3.447 10 O -0.577 6.577 11 N -0.563 5.563 12 N -0.525 5.525 13 C 0.208 3.792 14 C -0.192 4.192 15 C -0.069 4.069 16 C -0.178 4.178 17 C -0.096 4.096 18 C 0.001 3.999 19 F -0.146 7.146 20 H 0.273 0.727 21 H 0.403 0.597 22 H 0.432 0.568 23 H 0.127 0.873 24 H 0.124 0.876 25 H 0.122 0.878 26 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.722 -10.775 -0.036 13.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.134 4.134 3 Si 0.742 3.258 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.572 4.572 8 H 0.093 0.907 9 C 0.358 3.642 10 O -0.458 6.458 11 N -0.315 5.315 12 N -0.241 5.241 13 C 0.096 3.904 14 C -0.216 4.216 15 C -0.088 4.088 16 C -0.200 4.200 17 C -0.116 4.116 18 C -0.025 4.025 19 F -0.125 7.125 20 H 0.084 0.916 21 H 0.243 0.757 22 H 0.274 0.726 23 H 0.144 0.856 24 H 0.142 0.858 25 H 0.140 0.860 26 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.609 -10.366 -0.032 12.293 hybrid contribution 0.266 0.737 -0.006 0.784 sum 6.875 -9.629 -0.038 11.831 Atomic orbital electron populations 1.69992 1.07183 1.28024 1.33797 1.25726 0.94771 1.00483 0.92467 0.86250 0.79680 0.80181 0.79645 1.19049 1.20372 1.19041 1.20621 0.93771 0.87891 1.54903 0.90738 1.18641 0.87710 0.80702 0.77101 1.90634 1.13818 1.85747 1.55553 1.45888 1.06906 0.94952 1.83718 1.43460 1.07283 0.95462 1.77876 1.17909 0.92325 0.83988 0.96189 1.20370 0.90983 0.99176 1.11091 1.20857 0.99562 0.91639 0.96779 1.20594 0.92951 0.98038 1.08384 1.20805 0.94893 0.95807 1.00047 1.16982 0.76776 0.92788 1.15964 1.91434 1.28804 1.97232 1.95046 0.91583 0.75748 0.72590 0.85554 0.85841 0.85951 0.85283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.12 11.83 55.55 0.66 -21.46 15 2 C 0.09 2.32 5.50 -17.37 -0.10 2.23 15 3 Si 0.92 19.25 29.56 -169.99 -5.02 14.22 15 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 15 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 7 C -0.53 -14.40 9.54 -35.63 -0.34 -14.74 15 8 H 0.07 1.79 7.85 -52.49 -0.41 1.38 15 9 C 0.55 15.38 7.86 -12.99 -0.10 15.28 15 10 O -0.58 -18.29 14.86 5.20 0.08 -18.22 15 11 N -0.56 -12.70 6.21 30.19 0.19 -12.51 15 12 N -0.52 -11.02 6.46 32.46 0.21 -10.81 15 13 C 0.21 3.67 6.73 -83.67 -0.56 3.11 15 14 C -0.19 -2.88 9.48 -39.39 -0.37 -3.25 15 15 C -0.07 -0.85 10.04 -39.60 -0.40 -1.25 15 16 C -0.18 -2.10 10.04 -39.55 -0.40 -2.50 15 17 C -0.10 -1.27 10.02 -39.55 -0.40 -1.67 15 18 C 0.00 0.01 7.31 -39.25 -0.29 -0.28 15 19 F -0.15 -2.57 16.64 2.25 0.04 -2.53 15 20 H 0.27 7.18 8.29 -40.82 -0.34 6.84 15 21 H 0.40 7.79 6.59 -182.59 -1.20 6.58 15 22 H 0.43 9.68 7.49 -182.59 -1.37 8.31 15 23 H 0.13 1.78 6.21 -52.49 -0.33 1.46 15 24 H 0.12 1.16 8.06 -52.49 -0.42 0.74 15 25 H 0.12 1.09 8.06 -52.49 -0.42 0.67 15 26 H 0.13 1.40 8.06 -52.48 -0.42 0.97 15 LS Contribution 243.99 15.07 3.68 3.68 Total: -1.00 -32.24 243.99 -6.84 -39.08 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -3.71 Total: 11.62 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -2.95 Total: -3.07 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 1.05 Total: -44.79 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: 0.08 Total: -18.22 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -32.24 -6.84 -39.08 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773454964.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.531 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds