Wall clock time and date at job start Sun Mar 29 2020 22:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 120.00245 * 2 1 4 4 H 1.48503 * 109.46918 * 240.00069 * 3 2 1 5 5 H 1.48500 * 109.47066 * 359.97438 * 3 2 1 6 6 H 1.48489 * 109.47001 * 119.99849 * 3 2 1 7 7 C 1.37878 * 119.99627 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99733 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00241 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47161 * 180.02562 * 9 7 2 11 11 C 1.34772 * 120.00136 * 180.02562 * 10 9 7 12 12 O 1.21588 * 119.99949 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00069 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99928 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.46916 * 179.97438 * 14 13 11 16 16 C 1.41381 * 126.57424 * 90.00122 * 15 14 13 17 17 C 1.34520 * 106.83580 * 179.72986 * 16 15 14 18 18 O 1.34302 * 108.42210 * 0.26485 * 17 16 15 19 19 C 1.34302 * 109.47622 * 359.97438 * 18 17 16 20 20 H 0.96999 * 119.99377 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47064 * 60.00116 * 9 7 2 22 22 H 1.09004 * 109.46775 * 300.00147 * 9 7 2 23 23 H 0.97000 * 119.99607 * 359.97438 * 10 9 7 24 24 H 0.96992 * 120.00059 * 359.97438 * 13 11 10 25 25 H 1.09007 * 109.47170 * 59.99754 * 14 13 11 26 26 H 1.08999 * 109.46799 * 299.99624 * 14 13 11 27 27 H 1.08002 * 126.58570 * 359.97438 * 16 15 14 28 28 H 1.08004 * 125.78733 * 180.22473 * 17 16 15 29 29 H 1.07999 * 125.79201 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6128 -0.0015 11 6 1.7537 -4.8834 -0.0029 12 8 0.5583 -5.1056 -0.0039 13 7 2.6295 -5.9078 -0.0032 14 6 2.1411 -7.2890 -0.0042 15 6 3.3132 -8.2363 -0.0050 16 6 3.9685 -8.7666 1.1300 17 6 4.9495 -9.5668 0.6750 18 8 4.9268 -9.5447 -0.6676 19 6 3.9386 -8.7369 -1.0855 20 1 -0.4849 0.8401 -0.0004 21 1 0.6247 -2.5563 -0.8920 22 1 0.6240 -2.5575 0.8880 23 1 3.1566 -3.4355 -0.0010 24 1 3.5831 -5.7306 -0.0028 25 1 1.5358 -7.4598 -0.8945 26 1 1.5353 -7.4608 0.8855 27 1 3.7255 -8.5705 2.1639 28 1 5.6388 -10.1309 1.2859 29 1 3.6864 -8.5277 -2.1146 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787357930.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:59 Heat of formation + Delta-G solvation = -20.366852 kcal Electronic energy + Delta-G solvation = -14354.201140 eV Core-core repulsion = 11665.112712 eV Total energy + Delta-G solvation = -2689.088428 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.74470 -39.09835 -35.28998 -34.01768 -32.69936 -32.10105 -29.89720 -27.44590 -25.65347 -22.46222 -21.77078 -20.57774 -20.12339 -18.25648 -17.47577 -16.18224 -15.97759 -15.48859 -14.99615 -14.78225 -14.55714 -13.57209 -13.51586 -13.10671 -12.97616 -12.19818 -12.14974 -11.90585 -11.54648 -10.95193 -10.84537 -10.27815 -10.08574 -9.37484 -9.35203 -8.77290 -8.74055 -8.63482 -7.71609 -6.12527 -4.19026 1.54572 2.29942 2.94040 3.27719 3.32128 3.33746 3.65496 3.99413 4.35895 4.60418 4.69529 4.91622 5.20452 5.23290 5.43249 5.50973 5.79630 5.92534 6.04985 6.28335 6.89264 6.90602 7.16867 7.55360 7.59144 7.60839 7.95014 8.08374 8.79739 8.98603 9.37018 9.51643 10.97691 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.058528 B = 0.004487 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.292094 B = 6239.440138 C = 6521.442181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.730 5.730 11 C 0.692 3.308 12 O -0.602 6.602 13 N -0.754 5.754 14 C 0.211 3.789 15 C -0.196 4.196 16 C -0.198 4.198 17 C -0.047 4.047 18 O -0.178 6.178 19 C -0.019 4.019 20 H 0.266 0.734 21 H 0.025 0.975 22 H 0.024 0.976 23 H 0.386 0.614 24 H 0.392 0.608 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.150 0.850 28 H 0.202 0.798 29 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.714 -16.482 0.159 19.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.382 5.382 11 C 0.392 3.608 12 O -0.482 6.482 13 N -0.412 5.412 14 C 0.087 3.913 15 C -0.198 4.198 16 C -0.217 4.217 17 C -0.115 4.115 18 O -0.074 6.074 19 C -0.088 4.088 20 H 0.076 0.924 21 H 0.043 0.957 22 H 0.042 0.958 23 H 0.218 0.782 24 H 0.225 0.775 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.167 0.833 28 H 0.219 0.781 29 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 9.573 -16.671 -0.023 19.224 hybrid contribution 1.211 1.169 0.215 1.697 sum 10.784 -15.503 0.193 18.885 Atomic orbital electron populations 1.69976 1.06074 1.27339 1.48920 1.24951 0.94925 0.99383 0.94805 0.86466 0.79387 0.82339 0.78636 1.20114 1.21084 1.20112 1.21202 0.93229 0.90482 1.53142 0.92020 1.18973 0.87788 0.81051 0.97598 1.45715 1.10770 1.04415 1.77278 1.16157 0.85171 0.81055 0.78411 1.90871 1.14247 1.84264 1.58770 1.45223 1.08903 1.04701 1.82404 1.19223 0.91418 0.78056 1.02637 1.20599 1.01916 1.04263 0.93042 1.21819 0.98345 1.01367 1.00176 1.24024 1.02592 1.04070 0.80780 1.84083 1.45982 1.54411 1.22886 1.24035 0.89798 0.94989 1.00006 0.92429 0.95745 0.95754 0.78183 0.77514 0.91183 0.91063 0.83270 0.78135 0.77860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.42 13.29 55.43 0.74 -25.68 15 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 3 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 15 4 H -0.28 -6.28 7.11 56.52 0.40 -5.87 15 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 7 C -0.54 -14.97 9.28 -34.44 -0.32 -15.29 15 8 H 0.06 1.59 7.60 -52.48 -0.40 1.19 15 9 C 0.27 7.29 5.43 -5.19 -0.03 7.26 15 10 N -0.73 -16.03 5.55 -66.41 -0.37 -16.40 15 11 C 0.69 14.70 8.57 -86.92 -0.74 13.96 15 12 O -0.60 -15.41 16.34 5.29 0.09 -15.32 15 13 N -0.75 -11.77 5.55 -66.41 -0.37 -12.14 15 14 C 0.21 2.89 6.19 -5.19 -0.03 2.86 15 15 C -0.20 -2.19 5.53 -104.74 -0.58 -2.77 15 16 C -0.20 -1.97 10.87 -39.70 -0.43 -2.40 15 17 C -0.05 -0.40 12.09 29.42 0.36 -0.05 15 18 O -0.18 -1.77 10.65 5.71 0.06 -1.71 15 19 C -0.02 -0.19 12.01 29.42 0.35 0.16 15 20 H 0.27 7.44 8.31 -40.82 -0.34 7.10 15 21 H 0.02 0.74 8.14 -51.93 -0.42 0.31 15 22 H 0.02 0.73 8.14 -51.93 -0.42 0.31 15 23 H 0.39 7.27 8.34 -40.82 -0.34 6.93 15 24 H 0.39 5.13 8.48 -40.82 -0.35 4.78 15 25 H 0.07 0.97 8.14 -51.92 -0.42 0.55 15 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 27 H 0.15 1.33 8.06 -52.49 -0.42 0.91 15 28 H 0.20 0.95 8.06 -52.48 -0.42 0.53 15 29 H 0.20 1.46 8.06 -52.49 -0.42 1.04 15 LS Contribution 267.12 15.07 4.03 4.03 Total: -1.00 -33.92 267.12 -5.55 -39.47 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -3.18 Total: 6.32 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -1.52 Total: 5.41 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.00 Total: -54.22 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: 0.15 Total: -17.04 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -33.92 -5.55 -39.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787357930.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.102 kcal (2) G-P(sol) polarization free energy of solvation -33.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds