Wall clock time and date at job start Sun Mar 29 2020 22:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 120.00245 * 2 1 4 4 H 1.48503 * 109.46918 * 240.00069 * 3 2 1 5 5 H 1.48500 * 109.47066 * 359.97438 * 3 2 1 6 6 H 1.48489 * 109.47001 * 119.99849 * 3 2 1 7 7 C 1.37878 * 119.99627 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99733 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00241 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47161 * 180.02562 * 9 7 2 11 11 C 1.34772 * 120.00136 * 180.02562 * 10 9 7 12 12 O 1.21588 * 119.99949 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00069 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99928 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.46916 * 179.97438 * 14 13 11 16 16 C 1.41381 * 126.57424 * 90.00122 * 15 14 13 17 17 C 1.34520 * 106.83580 * 179.72986 * 16 15 14 18 18 O 1.34302 * 108.42210 * 0.26485 * 17 16 15 19 19 C 1.34302 * 109.47622 * 359.97438 * 18 17 16 20 20 H 0.96999 * 119.99377 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47064 * 60.00116 * 9 7 2 22 22 H 1.09004 * 109.46775 * 300.00147 * 9 7 2 23 23 H 0.97000 * 119.99607 * 359.97438 * 10 9 7 24 24 H 0.96992 * 120.00059 * 359.97438 * 13 11 10 25 25 H 1.09007 * 109.47170 * 59.99754 * 14 13 11 26 26 H 1.08999 * 109.46799 * 299.99624 * 14 13 11 27 27 H 1.08002 * 126.58570 * 359.97438 * 16 15 14 28 28 H 1.08004 * 125.78733 * 180.22473 * 17 16 15 29 29 H 1.07999 * 125.79201 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6128 -0.0015 11 6 1.7537 -4.8834 -0.0029 12 8 0.5583 -5.1056 -0.0039 13 7 2.6295 -5.9078 -0.0032 14 6 2.1411 -7.2890 -0.0042 15 6 3.3132 -8.2363 -0.0050 16 6 3.9685 -8.7666 1.1300 17 6 4.9495 -9.5668 0.6750 18 8 4.9268 -9.5447 -0.6676 19 6 3.9386 -8.7369 -1.0855 20 1 -0.4849 0.8401 -0.0004 21 1 0.6247 -2.5563 -0.8920 22 1 0.6240 -2.5575 0.8880 23 1 3.1566 -3.4355 -0.0010 24 1 3.5831 -5.7306 -0.0028 25 1 1.5358 -7.4598 -0.8945 26 1 1.5353 -7.4608 0.8855 27 1 3.7255 -8.5705 2.1639 28 1 5.6388 -10.1309 1.2859 29 1 3.6864 -8.5277 -2.1146 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787357930.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:59 Heat of formation + Delta-G solvation = -46.623221 kcal Electronic energy + Delta-G solvation = -14355.339702 eV Core-core repulsion = 11665.112712 eV Total energy + Delta-G solvation = -2690.226990 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.49674 -40.82167 -36.66142 -35.93960 -34.41131 -33.52718 -30.77953 -29.29563 -27.02152 -24.49004 -22.48631 -21.87635 -21.44294 -19.85633 -18.57168 -17.85474 -17.29618 -16.83872 -16.57095 -16.36216 -15.61881 -15.07724 -14.92300 -14.85396 -14.01577 -13.89396 -13.67926 -13.20957 -12.89845 -12.83164 -12.64998 -12.22246 -11.48947 -11.39918 -10.78432 -10.73999 -10.28355 -9.58531 -9.51275 -8.27115 -6.43727 0.79361 1.42096 1.45801 1.48838 1.57140 2.15054 2.24369 2.28910 2.42973 3.07540 3.61885 3.77456 3.92752 4.14355 4.58670 4.67566 4.73852 5.09622 5.12225 5.26397 5.28457 5.47550 5.49594 5.53573 5.68778 5.86141 6.16760 6.27176 6.67722 7.25271 7.31451 7.72182 8.85006 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.058528 B = 0.004487 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.292094 B = 6239.440138 C = 6521.442181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.556 4.556 8 H 0.083 0.917 9 C 0.285 3.715 10 N -0.723 5.723 11 C 0.691 3.309 12 O -0.649 6.649 13 N -0.728 5.728 14 C 0.213 3.787 15 C -0.215 4.215 16 C -0.219 4.219 17 C -0.035 4.035 18 O -0.184 6.184 19 C -0.012 4.012 20 H 0.269 0.731 21 H -0.014 1.014 22 H -0.015 1.015 23 H 0.404 0.596 24 H 0.408 0.592 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.154 0.846 28 H 0.239 0.761 29 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.494 -16.759 0.078 21.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.594 4.594 8 H 0.101 0.899 9 C 0.162 3.838 10 N -0.377 5.377 11 C 0.391 3.609 12 O -0.532 6.532 13 N -0.386 5.386 14 C 0.090 3.910 15 C -0.217 4.217 16 C -0.238 4.238 17 C -0.101 4.101 18 O -0.079 6.079 19 C -0.080 4.080 20 H 0.078 0.922 21 H 0.004 0.996 22 H 0.003 0.997 23 H 0.240 0.760 24 H 0.244 0.756 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.172 0.828 28 H 0.255 0.745 29 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 12.437 -17.006 -0.102 21.069 hybrid contribution 0.346 1.122 0.249 1.200 sum 12.783 -15.884 0.147 20.389 Atomic orbital electron populations 1.70144 1.08260 1.28628 1.49864 1.26083 0.95812 1.03896 0.93866 0.85176 0.77868 0.76496 0.79464 1.18660 1.21049 1.18692 1.21578 0.94303 0.90496 1.53037 0.89860 1.18414 0.88106 0.83306 0.93986 1.45309 1.10901 1.03815 1.77675 1.16314 0.85074 0.81584 0.77963 1.90839 1.16691 1.84973 1.60730 1.45024 1.08979 1.04292 1.80299 1.19225 0.92661 0.77191 1.01965 1.20393 1.01938 1.04939 0.94462 1.21990 0.99177 1.02387 1.00259 1.24698 1.02127 1.02990 0.80302 1.84119 1.45815 1.54254 1.23713 1.24412 0.89038 0.93953 1.00640 0.92231 0.99569 0.99677 0.76040 0.75569 0.91469 0.92245 0.82790 0.74517 0.75742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.72 13.29 21.45 0.28 -56.44 15 2 C 0.00 0.17 5.46 84.65 0.46 0.63 15 3 Si 0.99 42.59 29.54 68.60 2.03 44.61 15 4 H -0.26 -10.68 7.11 99.48 0.71 -9.98 15 5 H -0.29 -12.19 7.11 99.48 0.71 -11.48 15 6 H -0.26 -10.71 7.11 99.48 0.71 -10.00 15 7 C -0.56 -30.74 9.28 25.60 0.24 -30.50 15 8 H 0.08 4.14 7.60 -2.91 -0.02 4.12 15 9 C 0.29 16.12 5.43 85.63 0.46 16.59 15 10 N -0.72 -32.06 5.55 -482.29 -2.68 -34.74 15 11 C 0.69 29.74 8.57 179.06 1.53 31.28 15 12 O -0.65 -34.45 16.34 -3.99 -0.07 -34.51 15 13 N -0.73 -22.23 5.55 -482.29 -2.68 -24.91 15 14 C 0.21 5.76 6.19 85.63 0.53 6.29 15 15 C -0.22 -4.48 5.53 -19.94 -0.11 -4.59 15 16 C -0.22 -3.94 10.87 22.19 0.24 -3.70 15 17 C -0.03 -0.48 12.09 66.97 0.81 0.33 15 18 O -0.18 -3.14 10.65 -2.47 -0.03 -3.16 15 19 C -0.01 -0.20 12.01 66.97 0.80 0.61 15 20 H 0.27 15.30 8.31 -92.71 -0.77 14.53 15 21 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 15 22 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 15 23 H 0.40 14.79 8.34 -92.71 -0.77 14.02 15 24 H 0.41 9.96 8.48 -92.71 -0.79 9.17 15 25 H 0.07 1.86 8.14 -2.38 -0.02 1.85 15 26 H 0.06 1.76 8.14 -2.39 -0.02 1.74 15 27 H 0.15 2.53 8.06 -2.91 -0.02 2.51 15 28 H 0.24 1.29 8.06 -2.91 -0.02 1.27 15 29 H 0.23 2.65 8.06 -2.91 -0.02 2.63 15 Total: -1.00 -75.15 267.12 1.46 -73.69 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -0.38 Total: 18.53 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: 4.97 Total: 16.93 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -5.07 Total: -116.09 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -0.09 Total: -37.67 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -75.15 1.46 -73.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787357930.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.065 kcal (2) G-P(sol) polarization free energy of solvation -75.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds