Wall clock time and date at job start Sun Mar 29 2020 21:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.33623 * 125.80686 * 2 1 4 4 C 1.34220 * 110.92527 * 179.77167 * 3 2 1 5 5 C 1.34155 * 109.14230 * 0.42057 * 4 3 2 6 6 C 1.36496 * 125.80994 * 180.02562 * 2 1 3 7 7 C 1.47231 * 127.20033 * 359.95732 * 6 2 1 8 8 O 1.21538 * 119.99926 * 0.02562 * 7 6 2 9 9 O 1.34768 * 120.00125 * 180.02562 * 7 6 2 10 10 C 1.45197 * 117.00039 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47284 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47177 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00520 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99608 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00118 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99596 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47503 * 59.99807 * 16 14 12 18 18 H 1.48505 * 109.46990 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47355 * 299.99605 * 16 14 12 20 20 H 1.08996 * 109.46945 * 269.97422 * 1 2 3 21 21 H 1.09002 * 109.47016 * 29.97186 * 1 2 3 22 22 H 1.09004 * 109.46579 * 149.97274 * 1 2 3 23 23 H 1.07995 * 125.42719 * 180.27806 * 4 3 2 24 24 H 1.08002 * 127.02806 * 179.87409 * 5 4 3 25 25 H 1.09002 * 109.47208 * 299.99910 * 10 9 7 26 26 H 1.09003 * 109.47301 * 60.00101 * 10 9 7 27 27 H 1.09002 * 109.46982 * 300.00120 * 11 10 9 28 28 H 1.09003 * 109.46811 * 59.99872 * 11 10 9 29 29 H 0.97002 * 119.99900 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2889 1.0837 0.0000 4 6 3.5860 0.7390 0.0050 5 6 3.6857 -0.5989 -0.0009 6 6 2.3057 -1.1069 -0.0005 7 6 1.8755 -2.5150 -0.0003 8 8 0.6913 -2.7886 0.0000 9 8 2.7948 -3.5005 -0.0003 10 6 2.2984 -4.8650 0.0005 11 6 3.4797 -5.8374 -0.0003 12 6 2.9644 -7.2536 0.0012 13 1 1.9009 -7.4414 0.0022 14 6 3.8510 -8.3097 0.0013 15 7 5.1461 -8.0810 -0.0004 16 14 3.2123 -10.0651 0.0024 17 1 2.3847 -10.2916 -1.2095 18 1 4.3589 -11.0089 0.0030 19 1 2.3859 -10.2904 1.2154 20 1 -0.3633 -0.0005 1.0276 21 1 -0.3633 0.8903 -0.5134 22 1 -0.3632 -0.8898 -0.5143 23 1 4.4170 1.4287 0.0103 24 1 4.5939 -1.1834 -0.0009 25 1 1.6918 -5.0304 0.8909 26 1 1.6909 -5.0312 -0.8891 27 1 4.0859 -5.6719 -0.8909 28 1 4.0876 -5.6714 0.8891 29 1 5.7697 -8.8240 0.0001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804578147.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:30 Heat of formation + Delta-G solvation = -87.058253 kcal Electronic energy + Delta-G solvation = -14552.933747 eV Core-core repulsion = 11828.660612 eV Total energy + Delta-G solvation = -2724.273135 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.088 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.64416 -39.58919 -36.06529 -33.37669 -33.06422 -31.97587 -30.24643 -27.21993 -25.20097 -23.45865 -21.54379 -20.73336 -19.59924 -17.91998 -16.68337 -16.51193 -15.93357 -15.64362 -15.44204 -14.53765 -14.12355 -13.32142 -13.25122 -13.01647 -12.90677 -12.62209 -12.34048 -11.85243 -11.22284 -11.04285 -10.72477 -10.69700 -10.24717 -9.89043 -9.62143 -9.60634 -9.30647 -8.68813 -8.43161 -6.09523 -4.13910 1.22867 1.99871 2.66401 3.27214 3.30706 3.31591 3.34769 3.39987 4.39798 4.43938 4.78328 5.03814 5.19983 5.26929 5.37215 5.54594 5.63074 5.77857 5.99907 6.11666 6.13424 6.26099 6.65378 6.90113 7.01338 7.57000 7.63818 7.87891 8.21264 8.29689 8.91434 9.50284 11.02023 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.060034 B = 0.004972 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.289024 B = 5629.745884 C = 6070.285207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.079 3.921 3 O -0.175 6.175 4 C -0.051 4.051 5 C -0.163 4.163 6 C -0.227 4.227 7 C 0.532 3.468 8 O -0.521 6.521 9 O -0.349 6.349 10 C 0.076 3.924 11 C 0.025 3.975 12 C -0.527 4.527 13 H 0.059 0.941 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.900 3.100 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 H 0.090 0.910 21 H 0.079 0.921 22 H 0.109 0.891 23 H 0.210 0.790 24 H 0.165 0.835 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.454 17.110 -0.007 17.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.027 3.973 3 O -0.072 6.072 4 C -0.116 4.116 5 C -0.182 4.182 6 C -0.229 4.229 7 C 0.378 3.622 8 O -0.413 6.413 9 O -0.265 6.265 10 C 0.003 3.997 11 C -0.012 4.012 12 C -0.565 4.565 13 H 0.077 0.923 14 C -0.141 4.141 15 N -0.529 5.529 16 Si 0.728 3.272 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 H 0.108 0.892 21 H 0.098 0.902 22 H 0.127 0.873 23 H 0.226 0.774 24 H 0.183 0.817 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.690 17.169 -0.010 17.798 hybrid contribution -0.016 -1.241 0.018 1.241 sum -4.706 15.928 0.008 16.608 Atomic orbital electron populations 1.20645 0.83601 1.05172 1.04556 1.22802 0.94092 0.83048 0.97383 1.83755 1.17348 1.34588 1.71509 1.23872 0.83290 0.96433 1.08035 1.23031 0.97118 0.94112 1.03936 1.20413 0.94059 0.91314 1.17133 1.19916 0.84025 0.85504 0.72730 1.90771 1.18249 1.84793 1.47494 1.86596 1.39275 1.17957 1.82681 1.23664 1.00216 0.74785 1.00991 1.19165 0.91977 0.91206 0.98875 1.20948 0.93241 0.90044 1.52283 0.92273 1.24984 0.94793 0.99507 0.94862 1.69965 1.01213 1.31978 1.49724 0.86523 0.78317 0.83613 0.78789 1.20053 1.21129 1.20060 0.89150 0.90229 0.87274 0.77361 0.81726 0.92241 0.92247 0.95348 0.95351 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 9.89 36.01 0.36 -0.52 15 2 C 0.08 1.05 7.38 -34.93 -0.26 0.79 15 3 O -0.18 -2.08 10.52 7.71 0.08 -2.00 15 4 C -0.05 -0.53 12.03 29.29 0.35 -0.18 15 5 C -0.16 -2.15 11.05 -37.45 -0.41 -2.57 15 6 C -0.23 -3.58 6.32 -103.30 -0.65 -4.23 15 7 C 0.53 10.21 7.95 34.38 0.27 10.48 15 8 O -0.52 -10.52 14.64 -19.30 -0.28 -10.80 15 9 O -0.35 -7.44 10.13 -40.68 -0.41 -7.85 15 10 C 0.08 1.74 5.41 37.16 0.20 1.94 15 11 C 0.02 0.66 5.35 -27.88 -0.15 0.51 15 12 C -0.53 -15.00 9.11 -34.44 -0.31 -15.31 15 13 H 0.06 1.62 7.74 -52.49 -0.41 1.21 15 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 15 15 N -0.89 -26.58 13.29 55.43 0.74 -25.85 15 16 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 15 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 20 H 0.09 0.84 8.14 -51.93 -0.42 0.41 15 21 H 0.08 0.62 8.14 -51.93 -0.42 0.19 15 22 H 0.11 1.31 6.49 -51.93 -0.34 0.98 15 23 H 0.21 1.22 8.06 -52.49 -0.42 0.79 15 24 H 0.17 2.04 8.06 -52.49 -0.42 1.61 15 25 H 0.06 1.34 8.14 -51.93 -0.42 0.92 15 26 H 0.06 1.34 8.14 -51.93 -0.42 0.92 15 27 H 0.03 0.79 8.14 -51.93 -0.42 0.37 15 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 15 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 LS Contribution 266.88 15.07 4.02 4.02 Total: -1.00 -32.16 266.88 -4.84 -37.00 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: -3.26 Total: -3.61 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -0.70 Total: -7.43 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.74 Total: -25.85 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.61 Total: -20.65 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -32.16 -4.84 -37.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804578147.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.061 kcal (2) G-P(sol) polarization free energy of solvation -32.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds