Wall clock time and date at job start Sun Mar 29 2020 21:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.33623 * 125.80686 * 2 1 4 4 C 1.34220 * 110.92527 * 179.77167 * 3 2 1 5 5 C 1.34155 * 109.14230 * 0.42057 * 4 3 2 6 6 C 1.36496 * 125.80994 * 180.02562 * 2 1 3 7 7 C 1.47231 * 127.20033 * 359.95732 * 6 2 1 8 8 O 1.21538 * 119.99926 * 0.02562 * 7 6 2 9 9 O 1.34768 * 120.00125 * 180.02562 * 7 6 2 10 10 C 1.45197 * 117.00039 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47284 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47177 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00520 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99608 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00118 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99596 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47503 * 59.99807 * 16 14 12 18 18 H 1.48505 * 109.46990 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47355 * 299.99605 * 16 14 12 20 20 H 1.08996 * 109.46945 * 269.97422 * 1 2 3 21 21 H 1.09002 * 109.47016 * 29.97186 * 1 2 3 22 22 H 1.09004 * 109.46579 * 149.97274 * 1 2 3 23 23 H 1.07995 * 125.42719 * 180.27806 * 4 3 2 24 24 H 1.08002 * 127.02806 * 179.87409 * 5 4 3 25 25 H 1.09002 * 109.47208 * 299.99910 * 10 9 7 26 26 H 1.09003 * 109.47301 * 60.00101 * 10 9 7 27 27 H 1.09002 * 109.46982 * 300.00120 * 11 10 9 28 28 H 1.09003 * 109.46811 * 59.99872 * 11 10 9 29 29 H 0.97002 * 119.99900 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2889 1.0837 0.0000 4 6 3.5860 0.7390 0.0050 5 6 3.6857 -0.5989 -0.0009 6 6 2.3057 -1.1069 -0.0005 7 6 1.8755 -2.5150 -0.0003 8 8 0.6913 -2.7886 0.0000 9 8 2.7948 -3.5005 -0.0003 10 6 2.2984 -4.8650 0.0005 11 6 3.4797 -5.8374 -0.0003 12 6 2.9644 -7.2536 0.0012 13 1 1.9009 -7.4414 0.0022 14 6 3.8510 -8.3097 0.0013 15 7 5.1461 -8.0810 -0.0004 16 14 3.2123 -10.0651 0.0024 17 1 2.3847 -10.2916 -1.2095 18 1 4.3589 -11.0089 0.0030 19 1 2.3859 -10.2904 1.2154 20 1 -0.3633 -0.0005 1.0276 21 1 -0.3633 0.8903 -0.5134 22 1 -0.3632 -0.8898 -0.5143 23 1 4.4170 1.4287 0.0103 24 1 4.5939 -1.1834 -0.0009 25 1 1.6918 -5.0304 0.8909 26 1 1.6909 -5.0312 -0.8891 27 1 4.0859 -5.6719 -0.8909 28 1 4.0876 -5.6714 0.8891 29 1 5.7697 -8.8240 0.0001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804578147.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:30 Heat of formation + Delta-G solvation = -106.743622 kcal Electronic energy + Delta-G solvation = -14553.787369 eV Core-core repulsion = 11828.660612 eV Total energy + Delta-G solvation = -2725.126757 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.63703 -41.17072 -37.71721 -35.46876 -34.18922 -32.90861 -32.29062 -28.32629 -27.05721 -24.88329 -23.05020 -22.34332 -20.80004 -19.23985 -18.45549 -17.72654 -17.72386 -17.09797 -16.75866 -16.38889 -15.24190 -15.04909 -14.43148 -14.27302 -14.17040 -13.86598 -13.82813 -13.16792 -13.07074 -12.76495 -12.59228 -12.58851 -11.90946 -11.56912 -11.51073 -11.40852 -10.95781 -10.62297 -9.65330 -8.28281 -6.42105 0.05449 1.01607 1.39959 1.44512 1.51261 1.58126 1.95443 1.96461 2.39918 3.05943 3.54781 3.69510 3.82941 4.19361 4.21736 4.30550 4.57670 4.59473 4.66790 4.72945 4.82246 5.10963 5.24755 5.31635 5.43122 5.49738 5.71417 5.94200 6.04330 6.67939 6.72552 7.27718 8.84367 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.060034 B = 0.004972 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.289024 B = 5629.745884 C = 6070.285207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.095 3.905 3 O -0.168 6.168 4 C -0.019 4.019 5 C -0.195 4.195 6 C -0.270 4.270 7 C 0.529 3.471 8 O -0.538 6.538 9 O -0.361 6.361 10 C 0.091 3.909 11 C 0.032 3.968 12 C -0.553 4.553 13 H 0.066 0.934 14 C 0.006 3.994 15 N -0.927 5.927 16 Si 0.976 3.024 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.265 1.265 20 H 0.104 0.896 21 H 0.112 0.888 22 H 0.090 0.910 23 H 0.260 0.740 24 H 0.164 0.836 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.005 0.995 28 H 0.005 0.995 29 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.173 18.257 0.033 18.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.041 3.959 3 O -0.064 6.064 4 C -0.084 4.084 5 C -0.214 4.214 6 C -0.272 4.272 7 C 0.377 3.623 8 O -0.431 6.431 9 O -0.278 6.278 10 C 0.018 3.982 11 C -0.005 4.005 12 C -0.590 4.590 13 H 0.085 0.915 14 C -0.193 4.193 15 N -0.566 5.566 16 Si 0.799 3.201 17 H -0.190 1.190 18 H -0.204 1.204 19 H -0.190 1.190 20 H 0.123 0.877 21 H 0.130 0.870 22 H 0.109 0.891 23 H 0.275 0.725 24 H 0.181 0.819 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.417 18.343 0.030 19.126 hybrid contribution 0.238 -1.447 0.005 1.466 sum -5.179 16.896 0.035 17.672 Atomic orbital electron populations 1.20758 0.81861 1.05833 1.05606 1.23182 0.95113 0.82518 0.95047 1.83819 1.17952 1.33758 1.70883 1.24712 0.83506 0.96021 1.04122 1.23155 0.96132 0.95616 1.06511 1.20448 0.96280 0.89832 1.20689 1.20482 0.83588 0.86296 0.71983 1.90746 1.18652 1.85157 1.48522 1.86576 1.40211 1.17577 1.83415 1.23210 0.98313 0.75520 1.01128 1.18975 0.92701 0.92254 0.96606 1.21348 0.93849 0.91055 1.52767 0.91540 1.25996 0.94905 1.04463 0.93959 1.70093 1.02631 1.33665 1.50240 0.85344 0.77962 0.77437 0.79373 1.18969 1.20409 1.18978 0.87744 0.86980 0.89127 0.72475 0.81873 0.92021 0.92031 0.97612 0.97615 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.61 9.89 71.24 0.70 -0.90 15 2 C 0.09 2.34 7.38 25.28 0.19 2.52 15 3 O -0.17 -3.45 10.52 4.68 0.05 -3.40 15 4 C -0.02 -0.34 12.03 66.89 0.80 0.47 15 5 C -0.20 -4.98 11.05 23.65 0.26 -4.72 15 6 C -0.27 -8.46 6.32 -19.01 -0.12 -8.58 15 7 C 0.53 20.74 7.95 70.19 0.56 21.30 15 8 O -0.54 -22.10 14.64 19.71 0.29 -21.81 15 9 O -0.36 -15.97 10.13 -56.79 -0.58 -16.54 15 10 C 0.09 4.33 5.41 71.98 0.39 4.72 15 11 C 0.03 1.77 5.35 29.85 0.16 1.93 15 12 C -0.55 -31.95 9.11 25.60 0.23 -31.72 15 13 H 0.07 3.65 7.74 -2.91 -0.02 3.63 15 14 C 0.01 0.33 5.46 84.66 0.46 0.80 15 15 N -0.93 -56.26 13.29 21.45 0.28 -55.97 15 16 Si 0.98 44.00 29.54 68.60 2.03 46.02 15 17 H -0.26 -11.46 7.11 99.48 0.71 -10.75 15 18 H -0.28 -12.18 7.11 99.48 0.71 -11.47 15 19 H -0.27 -11.47 7.11 99.48 0.71 -10.76 15 20 H 0.10 1.71 8.14 -2.39 -0.02 1.70 15 21 H 0.11 1.38 8.14 -2.39 -0.02 1.36 15 22 H 0.09 2.12 6.49 -2.38 -0.02 2.10 15 23 H 0.26 1.71 8.06 -2.91 -0.02 1.69 15 24 H 0.16 4.08 8.06 -2.91 -0.02 4.05 15 25 H 0.06 2.86 8.14 -2.39 -0.02 2.84 15 26 H 0.06 2.85 8.14 -2.39 -0.02 2.83 15 27 H 0.01 0.32 8.14 -2.39 -0.02 0.30 15 28 H 0.01 0.32 8.14 -2.39 -0.02 0.30 15 29 H 0.27 15.17 8.31 -92.71 -0.77 14.40 15 Total: -1.00 -70.53 266.88 6.86 -63.67 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: 1.15 Total: 2.23 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: 3.64 Total: -14.19 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.28 Total: -55.97 kcal Atomic # 8 Polarization: -41.51 SS G_CDS: -0.24 Total: -41.75 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -70.53 6.86 -63.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804578147.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.077 kcal (2) G-P(sol) polarization free energy of solvation -70.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds