Wall clock time and date at job start Sun Mar 29 2020 22:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40309 * 126.64379 * 2 1 4 4 C 1.35173 * 107.12039 * 179.97438 * 3 2 1 5 5 O 1.33913 * 108.78229 * 359.76042 * 4 3 2 6 6 C 1.34929 * 109.38220 * 0.39830 * 5 4 3 7 7 C 1.46468 * 126.00010 * 179.86399 * 6 5 4 8 8 O 1.21623 * 120.00296 * 179.69268 * 7 6 5 9 9 O 1.34903 * 119.99458 * 359.96734 * 7 6 5 10 10 C 1.45201 * 116.99766 * 179.72270 * 9 7 6 11 11 C 1.53000 * 109.47184 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.47088 * 180.02562 * 11 10 9 13 13 H 1.07997 * 119.99859 * 359.97438 * 12 11 10 14 14 C 1.37872 * 119.99688 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99951 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00290 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47441 * 90.00005 * 16 14 12 18 18 H 1.48494 * 109.47265 * 209.99766 * 16 14 12 19 19 H 1.48504 * 109.47257 * 330.00153 * 16 14 12 20 20 H 1.09000 * 109.47146 * 270.02249 * 1 2 3 21 21 H 1.09006 * 109.47451 * 30.02652 * 1 2 3 22 22 H 1.09004 * 109.47126 * 150.02221 * 1 2 3 23 23 H 1.07996 * 126.44293 * 0.02562 * 3 2 1 24 24 H 1.07999 * 125.60528 * 180.02562 * 4 3 2 25 25 H 1.09003 * 109.47123 * 300.00585 * 10 9 7 26 26 H 1.08997 * 109.46942 * 60.00326 * 10 9 7 27 27 H 1.09003 * 109.46990 * 300.00522 * 11 10 9 28 28 H 1.08997 * 109.47042 * 60.00231 * 11 10 9 29 29 H 0.96996 * 119.99834 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3444 1.1258 0.0000 4 6 3.6184 0.6740 0.0006 5 8 3.6011 -0.6650 0.0062 6 6 2.3226 -1.0963 0.0005 7 6 1.8857 -2.4942 0.0011 8 8 0.6989 -2.7605 0.0012 9 8 2.7996 -3.4865 0.0072 10 6 2.2945 -4.8478 0.0137 11 6 3.4695 -5.8277 0.0206 12 6 2.9453 -7.2406 0.0267 13 1 1.8806 -7.4215 0.0262 14 6 3.8250 -8.3022 0.0330 15 7 3.3675 -9.5353 0.0389 16 14 5.6666 -7.9893 0.0347 17 1 6.1523 -7.9000 1.4352 18 1 6.3589 -9.1048 -0.6590 19 1 5.9527 -6.7141 -0.6706 20 1 -0.3633 0.0004 1.0277 21 1 -0.3634 0.8898 -0.5143 22 1 -0.3633 -0.8902 -0.5135 23 1 2.0302 2.1590 0.0004 24 1 4.5045 1.2915 0.0011 25 1 1.6853 -5.0051 0.9038 26 1 1.6874 -5.0143 -0.8761 27 1 4.0790 -5.6705 -0.8693 28 1 4.0763 -5.6611 0.9106 29 1 3.9864 -10.2821 0.0437 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805184517.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:18 Heat of formation + Delta-G solvation = -80.591303 kcal Electronic energy + Delta-G solvation = -14645.508078 eV Core-core repulsion = 11921.515371 eV Total energy + Delta-G solvation = -2723.992707 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.83733 -39.80168 -36.39958 -34.20709 -33.31212 -31.05744 -30.41889 -27.95622 -25.37781 -23.24705 -21.63446 -20.66185 -19.97594 -18.18332 -17.04505 -16.70381 -16.28123 -15.78150 -15.61333 -14.26346 -13.88905 -13.47236 -13.32490 -13.18054 -13.08444 -12.71079 -12.48016 -11.98058 -11.56068 -11.32385 -10.73975 -10.68321 -10.08415 -9.95154 -9.88819 -9.73632 -9.35619 -8.81345 -8.62251 -6.13066 -4.14417 0.84805 2.12910 2.47714 2.98253 3.22617 3.28715 3.36012 3.41166 4.39041 4.54189 4.56018 4.94899 5.20592 5.26878 5.32352 5.56858 5.58788 5.83324 5.87840 5.94510 5.97476 6.21911 6.42188 6.63867 6.75944 7.14935 7.21085 7.61522 7.98173 8.39120 8.88285 9.46479 10.99392 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.049564 B = 0.005600 C = 0.005055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.791841 B = 4998.859611 C = 5537.895276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.084 4.084 3 C -0.229 4.229 4 C 0.002 3.998 5 O -0.147 6.147 6 C -0.061 4.061 7 C 0.545 3.455 8 O -0.491 6.491 9 O -0.350 6.350 10 C 0.082 3.918 11 C -0.010 4.010 12 C -0.528 4.528 13 H 0.076 0.924 14 C 0.073 3.927 15 N -0.897 5.897 16 Si 0.881 3.119 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.263 1.263 20 H 0.076 0.924 21 H 0.069 0.931 22 H 0.087 0.913 23 H 0.158 0.842 24 H 0.212 0.788 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.029 0.971 28 H 0.025 0.975 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.459 21.628 -0.114 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.086 4.086 3 C -0.248 4.248 4 C -0.069 4.069 5 O -0.042 6.042 6 C -0.112 4.112 7 C 0.389 3.611 8 O -0.381 6.381 9 O -0.266 6.266 10 C 0.010 3.990 11 C -0.047 4.047 12 C -0.565 4.565 13 H 0.094 0.906 14 C -0.130 4.130 15 N -0.535 5.535 16 Si 0.708 3.292 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.187 1.187 20 H 0.095 0.905 21 H 0.088 0.912 22 H 0.106 0.894 23 H 0.175 0.825 24 H 0.228 0.772 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.500 21.067 -0.113 21.073 hybrid contribution 0.880 0.171 0.038 0.897 sum 0.380 21.238 -0.075 21.241 Atomic orbital electron populations 1.20471 0.87977 1.03801 1.03127 1.20660 0.97741 0.90696 0.99468 1.21714 0.92309 1.00053 1.10753 1.24479 1.00044 0.80827 1.01521 1.84195 1.27985 1.22266 1.69714 1.20821 0.81880 0.92260 1.16195 1.19168 0.84314 0.83831 0.73786 1.90888 1.17110 1.83358 1.46759 1.86665 1.39282 1.18075 1.82569 1.23500 0.99379 0.74045 1.02096 1.19642 0.93606 0.93444 0.98045 1.20828 0.95652 0.87605 1.52457 0.90565 1.24929 0.99127 0.94827 0.94091 1.69896 1.35252 0.98243 1.50079 0.86752 0.85332 0.78367 0.78781 1.20041 1.21149 1.18724 0.90535 0.91230 0.89382 0.82455 0.77153 0.91335 0.91304 0.95271 0.95702 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 9.82 36.01 0.35 -0.72 15 2 C -0.08 -1.07 6.20 -104.42 -0.65 -1.71 15 3 C -0.23 -2.22 10.83 -39.89 -0.43 -2.65 15 4 C 0.00 0.02 12.08 29.64 0.36 0.37 15 5 O -0.15 -2.08 10.67 4.76 0.05 -2.03 15 6 C -0.06 -0.95 7.18 -36.85 -0.26 -1.22 15 7 C 0.54 10.04 7.93 34.04 0.27 10.31 15 8 O -0.49 -9.52 14.53 -19.36 -0.28 -9.80 15 9 O -0.35 -7.12 10.23 -42.49 -0.43 -7.56 15 10 C 0.08 1.79 5.42 37.16 0.20 1.99 15 11 C -0.01 -0.24 4.42 -27.88 -0.12 -0.37 15 12 C -0.53 -15.09 9.66 -34.44 -0.33 -15.42 15 13 H 0.08 2.32 7.99 -52.49 -0.42 1.90 15 14 C 0.07 2.11 5.47 -17.82 -0.10 2.01 15 15 N -0.90 -27.45 13.96 55.43 0.77 -26.67 15 16 Si 0.88 21.61 27.47 -169.99 -4.67 16.95 15 17 H -0.27 -6.61 7.11 56.52 0.40 -6.21 15 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 19 H -0.26 -6.24 6.54 56.52 0.37 -5.87 15 20 H 0.08 0.79 8.14 -51.93 -0.42 0.36 15 21 H 0.07 0.59 8.14 -51.93 -0.42 0.16 15 22 H 0.09 1.14 6.45 -51.93 -0.33 0.80 15 23 H 0.16 1.03 8.06 -52.49 -0.42 0.60 15 24 H 0.21 0.99 8.06 -52.49 -0.42 0.57 15 25 H 0.07 1.47 8.14 -51.93 -0.42 1.05 15 26 H 0.07 1.48 8.14 -51.93 -0.42 1.06 15 27 H 0.03 0.71 7.20 -51.93 -0.37 0.34 15 28 H 0.02 0.60 7.57 -51.93 -0.39 0.21 15 29 H 0.27 7.58 8.31 -40.82 -0.34 7.24 15 LS Contribution 262.80 15.07 3.96 3.96 Total: -1.00 -32.30 262.80 -4.54 -36.84 By element: Atomic # 1 Polarization: -1.05 SS G_CDS: -3.22 Total: -4.28 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -0.72 Total: -7.41 kcal Atomic # 7 Polarization: -27.45 SS G_CDS: 0.77 Total: -26.67 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.67 Total: -19.39 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.30 -4.54 -36.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805184517.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.747 kcal (2) G-P(sol) polarization free energy of solvation -32.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds