Wall clock time and date at job start Sun Mar 29 2020 22:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40309 * 126.64379 * 2 1 4 4 C 1.35173 * 107.12039 * 179.97438 * 3 2 1 5 5 O 1.33913 * 108.78229 * 359.76042 * 4 3 2 6 6 C 1.34929 * 109.38220 * 0.39830 * 5 4 3 7 7 C 1.46468 * 126.00010 * 179.86399 * 6 5 4 8 8 O 1.21623 * 120.00296 * 179.69268 * 7 6 5 9 9 O 1.34903 * 119.99458 * 359.96734 * 7 6 5 10 10 C 1.45201 * 116.99766 * 179.72270 * 9 7 6 11 11 C 1.53000 * 109.47184 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.47088 * 180.02562 * 11 10 9 13 13 H 1.07997 * 119.99859 * 359.97438 * 12 11 10 14 14 C 1.37872 * 119.99688 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99951 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00290 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47441 * 90.00005 * 16 14 12 18 18 H 1.48494 * 109.47265 * 209.99766 * 16 14 12 19 19 H 1.48504 * 109.47257 * 330.00153 * 16 14 12 20 20 H 1.09000 * 109.47146 * 270.02249 * 1 2 3 21 21 H 1.09006 * 109.47451 * 30.02652 * 1 2 3 22 22 H 1.09004 * 109.47126 * 150.02221 * 1 2 3 23 23 H 1.07996 * 126.44293 * 0.02562 * 3 2 1 24 24 H 1.07999 * 125.60528 * 180.02562 * 4 3 2 25 25 H 1.09003 * 109.47123 * 300.00585 * 10 9 7 26 26 H 1.08997 * 109.46942 * 60.00326 * 10 9 7 27 27 H 1.09003 * 109.46990 * 300.00522 * 11 10 9 28 28 H 1.08997 * 109.47042 * 60.00231 * 11 10 9 29 29 H 0.96996 * 119.99834 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3444 1.1258 0.0000 4 6 3.6184 0.6740 0.0006 5 8 3.6011 -0.6650 0.0062 6 6 2.3226 -1.0963 0.0005 7 6 1.8857 -2.4942 0.0011 8 8 0.6989 -2.7605 0.0012 9 8 2.7996 -3.4865 0.0072 10 6 2.2945 -4.8478 0.0137 11 6 3.4695 -5.8277 0.0206 12 6 2.9453 -7.2406 0.0267 13 1 1.8806 -7.4215 0.0262 14 6 3.8250 -8.3022 0.0330 15 7 3.3675 -9.5353 0.0389 16 14 5.6666 -7.9893 0.0347 17 1 6.1523 -7.9000 1.4352 18 1 6.3589 -9.1048 -0.6590 19 1 5.9527 -6.7141 -0.6706 20 1 -0.3633 0.0004 1.0277 21 1 -0.3634 0.8898 -0.5143 22 1 -0.3633 -0.8902 -0.5135 23 1 2.0302 2.1590 0.0004 24 1 4.5045 1.2915 0.0011 25 1 1.6853 -5.0051 0.9038 26 1 1.6874 -5.0143 -0.8761 27 1 4.0790 -5.6705 -0.8693 28 1 4.0763 -5.6611 0.9106 29 1 3.9864 -10.2821 0.0437 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805184517.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:17 Heat of formation + Delta-G solvation = -101.444268 kcal Electronic energy + Delta-G solvation = -14646.412331 eV Core-core repulsion = 11921.515371 eV Total energy + Delta-G solvation = -2724.896960 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.77028 -41.27275 -37.92297 -35.45989 -35.12385 -32.91125 -31.51343 -29.01807 -27.21257 -24.52627 -22.78135 -22.40936 -21.11006 -19.52409 -18.87587 -17.96546 -17.83914 -16.92934 -16.85275 -16.31283 -15.14432 -15.08998 -14.69465 -14.40949 -14.09995 -13.92693 -13.61318 -13.38323 -13.21950 -12.92335 -12.55378 -12.46986 -11.84410 -11.68472 -11.56577 -11.51473 -10.83230 -10.72560 -9.76840 -8.36334 -6.44662 -0.24425 1.29996 1.31381 1.36695 1.38271 1.51295 1.74180 2.07553 2.32785 2.98233 3.62822 3.72380 3.85476 4.12178 4.12385 4.41765 4.55227 4.60112 4.68281 4.73217 4.90744 5.04487 5.16233 5.23780 5.34000 5.42558 5.48909 5.85154 6.13378 6.53686 6.60991 7.20434 8.79584 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.049564 B = 0.005600 C = 0.005055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.791841 B = 4998.859611 C = 5537.895276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.070 4.070 3 C -0.231 4.231 4 C 0.027 3.973 5 O -0.172 6.172 6 C -0.116 4.116 7 C 0.540 3.460 8 O -0.514 6.514 9 O -0.358 6.358 10 C 0.093 3.907 11 C -0.004 4.004 12 C -0.543 4.543 13 H 0.038 0.962 14 C 0.014 3.986 15 N -0.942 5.942 16 Si 0.953 3.047 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.248 1.248 20 H 0.084 0.916 21 H 0.101 0.899 22 H 0.063 0.937 23 H 0.197 0.803 24 H 0.262 0.738 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.034 0.966 28 H 0.033 0.967 29 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.363 24.963 -0.080 25.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.072 4.072 3 C -0.250 4.250 4 C -0.042 4.042 5 O -0.067 6.067 6 C -0.165 4.165 7 C 0.387 3.613 8 O -0.406 6.406 9 O -0.275 6.275 10 C 0.020 3.980 11 C -0.041 4.041 12 C -0.580 4.580 13 H 0.057 0.943 14 C -0.185 4.185 15 N -0.582 5.582 16 Si 0.775 3.225 17 H -0.188 1.188 18 H -0.203 1.203 19 H -0.171 1.171 20 H 0.102 0.898 21 H 0.120 0.880 22 H 0.081 0.919 23 H 0.214 0.786 24 H 0.278 0.722 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.303 24.424 -0.078 24.459 hybrid contribution 0.235 -0.702 0.028 0.741 sum 1.538 23.722 -0.051 23.772 Atomic orbital electron populations 1.20549 0.87240 1.04153 1.03672 1.21123 0.98529 0.91000 0.96534 1.22160 0.91619 1.00832 1.10358 1.25629 1.02040 0.79261 0.97306 1.84168 1.27322 1.24660 1.70563 1.20461 0.83359 0.90983 1.21686 1.19667 0.83938 0.84654 0.73002 1.90861 1.17699 1.83910 1.48125 1.86629 1.39975 1.17531 1.83351 1.23084 0.98080 0.75142 1.01711 1.19474 0.94422 0.91800 0.98426 1.21080 0.94235 0.90172 1.52549 0.94319 1.25922 1.04850 0.94308 0.93387 1.70034 1.37431 0.99454 1.51238 0.85617 0.78284 0.78992 0.79566 1.18762 1.20334 1.17103 0.89781 0.88002 0.91851 0.78635 0.72202 0.91790 0.91806 0.94773 0.94861 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.04 9.82 71.24 0.70 -1.34 15 2 C -0.07 -1.63 6.20 -19.73 -0.12 -1.76 15 3 C -0.23 -3.48 10.83 22.07 0.24 -3.24 15 4 C 0.03 0.40 12.08 67.11 0.81 1.21 15 5 O -0.17 -4.54 10.67 -4.80 -0.05 -4.59 15 6 C -0.12 -3.53 7.18 24.04 0.17 -3.36 15 7 C 0.54 20.45 7.93 69.97 0.55 21.00 15 8 O -0.51 -20.76 14.53 19.43 0.28 -20.48 15 9 O -0.36 -14.88 10.23 -56.79 -0.58 -15.46 15 10 C 0.09 4.17 5.42 71.98 0.39 4.56 15 11 C 0.00 -0.19 4.42 29.85 0.13 -0.05 15 12 C -0.54 -31.96 9.66 25.60 0.25 -31.71 15 13 H 0.04 2.49 7.99 -2.91 -0.02 2.46 15 14 C 0.01 0.80 5.47 84.65 0.46 1.26 15 15 N -0.94 -58.99 13.96 21.45 0.30 -58.69 15 16 Si 0.95 44.22 27.47 68.60 1.88 46.10 15 17 H -0.26 -11.65 7.11 99.48 0.71 -10.94 15 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 15 19 H -0.25 -10.80 6.54 99.48 0.65 -10.15 15 20 H 0.08 1.60 8.14 -2.39 -0.02 1.58 15 21 H 0.10 1.40 8.14 -2.38 -0.02 1.38 15 22 H 0.06 1.64 6.45 -2.39 -0.02 1.62 15 23 H 0.20 1.39 8.06 -2.91 -0.02 1.36 15 24 H 0.26 0.86 8.06 -2.91 -0.02 0.83 15 25 H 0.06 2.88 8.14 -2.39 -0.02 2.86 15 26 H 0.06 2.88 8.14 -2.39 -0.02 2.86 15 27 H 0.03 1.65 7.20 -2.39 -0.02 1.63 15 28 H 0.03 1.58 7.57 -2.39 -0.02 1.56 15 29 H 0.27 15.69 8.31 -92.71 -0.77 14.92 15 Total: -1.00 -72.84 262.80 6.52 -66.33 By element: Atomic # 1 Polarization: -0.88 SS G_CDS: 1.10 Total: 0.21 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: 3.59 Total: -13.43 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.30 Total: -58.69 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -0.35 Total: -40.52 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.88 Total: 46.10 kcal Total: -72.84 6.52 -66.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805184517.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.118 kcal (2) G-P(sol) polarization free energy of solvation -72.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds