Wall clock time and date at job start Sun Mar 29 2020 22:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30428 * 125.99100 * 2 1 4 4 N 1.39926 * 108.92739 * 180.02562 * 3 2 1 5 5 C 1.46505 * 125.74420 * 179.97438 * 4 3 2 6 6 C 1.34244 * 108.51768 * 0.02562 * 4 3 2 7 7 C 1.50702 * 126.30363 * 179.97438 * 6 4 3 8 8 C 1.38165 * 107.39977 * 359.97438 * 6 4 3 9 9 C 1.47249 * 126.43105 * 179.73917 * 8 6 4 10 10 O 1.21550 * 119.99973 * 90.00093 * 9 8 6 11 11 O 1.34797 * 119.99927 * 269.99679 * 9 8 6 12 12 C 1.34888 * 116.99883 * 180.02562 * 11 9 8 13 13 H 1.08001 * 120.00065 * 0.02562 * 12 11 9 14 14 C 1.38760 * 119.99729 * 180.02562 * 12 11 9 15 15 N 1.31441 * 119.99938 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 120.00191 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47025 * 89.99759 * 16 14 12 18 18 H 1.48502 * 109.47371 * 209.99961 * 16 14 12 19 19 H 1.48499 * 109.47181 * 329.99991 * 16 14 12 20 20 H 1.09001 * 109.47354 * 269.96135 * 1 2 3 21 21 H 1.09008 * 109.47057 * 29.95932 * 1 2 3 22 22 H 1.09004 * 109.47401 * 149.95608 * 1 2 3 23 23 H 1.09001 * 109.47301 * 270.02951 * 5 4 3 24 24 H 1.09003 * 109.46961 * 30.03231 * 5 4 3 25 25 H 1.08997 * 109.46882 * 150.02661 * 5 4 3 26 26 H 1.08999 * 109.47109 * 269.99524 * 7 6 4 27 27 H 1.09000 * 109.46850 * 30.00008 * 7 6 4 28 28 H 1.09000 * 109.47199 * 149.99919 * 7 6 4 29 29 H 0.97003 * 120.00270 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2734 1.0553 0.0000 4 7 3.6111 0.6447 -0.0006 5 6 4.7782 1.5303 -0.0013 6 6 3.6452 -0.6973 -0.0015 7 6 4.8819 -1.5584 -0.0029 8 6 2.3376 -1.1438 -0.0009 9 6 1.8929 -2.5475 -0.0070 10 8 1.7117 -3.1321 1.0432 11 8 1.6868 -3.1842 -1.1771 12 6 1.2797 -4.4685 -1.1120 13 1 1.1329 -4.9405 -0.1518 14 6 1.0494 -5.1832 -2.2789 15 7 0.6522 -6.4346 -2.2155 16 14 1.3039 -4.3671 -3.9398 17 1 2.7058 -4.5745 -4.3837 18 1 0.3764 -4.9659 -4.9330 19 1 1.0319 -2.9119 -3.8232 20 1 -0.3634 -0.0007 1.0277 21 1 -0.3633 0.8904 -0.5132 22 1 -0.3634 -0.8896 -0.5145 23 1 5.0668 1.7502 -1.0292 24 1 4.5300 2.4588 0.5130 25 1 5.6059 1.0409 0.5118 26 1 5.1793 -1.7654 -1.0309 27 1 5.6889 -1.0360 0.5107 28 1 4.6719 -2.4968 0.5104 29 1 0.4908 -6.9341 -3.0312 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809297113.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:41 Heat of formation + Delta-G solvation = -31.488923 kcal Electronic energy + Delta-G solvation = -15281.371122 eV Core-core repulsion = 12591.800405 eV Total energy + Delta-G solvation = -2689.570717 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.52164 -40.81305 -37.32840 -35.31980 -34.49453 -33.12912 -30.53861 -29.07064 -27.47712 -26.50234 -23.51670 -20.96174 -20.54932 -20.13706 -18.77979 -17.52611 -16.79783 -16.70140 -16.29668 -15.86017 -14.94040 -14.58831 -14.50470 -14.33569 -14.07373 -14.05892 -13.45524 -13.41877 -13.21831 -12.90102 -12.86905 -12.41859 -12.36113 -11.90290 -11.84780 -11.24042 -10.83108 -10.19446 -9.61047 -8.54684 -6.40598 0.58993 1.21931 1.24055 1.34581 1.40667 1.47866 1.55728 2.27421 2.58983 2.90360 3.43991 3.54912 3.88209 4.20248 4.34638 4.39361 4.50349 4.58434 4.64790 4.66279 4.75703 4.84689 4.94656 4.98235 5.38484 5.51547 5.89201 5.91657 6.48001 6.50198 6.81714 7.60657 8.58177 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.031916 B = 0.008629 C = 0.008360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.101859 B = 3243.914504 C = 3348.363574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.105 3.895 3 N -0.311 5.311 4 N -0.355 5.355 5 C 0.086 3.914 6 C 0.138 3.862 7 C -0.097 4.097 8 C -0.295 4.295 9 C 0.505 3.495 10 O -0.568 6.568 11 O -0.251 6.251 12 C -0.408 4.408 13 H 0.060 0.940 14 C 0.023 3.977 15 N -0.913 5.913 16 Si 0.977 3.023 17 H -0.255 1.255 18 H -0.261 1.261 19 H -0.260 1.260 20 H 0.091 0.909 21 H 0.103 0.897 22 H 0.063 0.937 23 H 0.097 0.903 24 H 0.103 0.897 25 H 0.120 0.880 26 H 0.104 0.896 27 H 0.121 0.879 28 H 0.066 0.934 29 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.644 16.505 -0.463 19.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.061 4.061 3 N -0.134 5.134 4 N -0.135 5.135 5 C -0.053 4.053 6 C 0.005 3.995 7 C -0.155 4.155 8 C -0.308 4.308 9 C 0.352 3.648 10 O -0.464 6.464 11 O -0.159 6.159 12 C -0.484 4.484 13 H 0.078 0.922 14 C -0.177 4.177 15 N -0.552 5.552 16 Si 0.797 3.203 17 H -0.180 1.180 18 H -0.186 1.186 19 H -0.184 1.184 20 H 0.109 0.891 21 H 0.121 0.879 22 H 0.082 0.918 23 H 0.116 0.884 24 H 0.122 0.878 25 H 0.138 0.862 26 H 0.122 0.878 27 H 0.140 0.860 28 H 0.085 0.915 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.704 17.554 -0.305 20.060 hybrid contribution -0.363 -1.368 -0.155 1.424 sum 9.340 16.186 -0.460 18.694 Atomic orbital electron populations 1.20329 0.85010 1.04063 1.04158 1.22605 0.98039 0.88360 0.97073 1.76955 0.87017 1.21710 1.27709 1.48495 1.06367 1.03908 1.54724 1.22454 0.82883 0.94298 1.05626 1.21710 0.95928 0.85627 0.96192 1.20728 0.91602 0.97755 1.05373 1.19200 0.94570 0.90272 1.26771 1.20330 0.76550 0.86470 0.81480 1.90641 1.52372 1.69027 1.34349 1.83699 1.72648 1.26185 1.33408 1.20368 1.47599 0.84456 0.95968 0.92221 1.25461 0.94206 0.95222 1.02852 1.69693 1.44034 1.09690 1.31819 0.85172 0.79653 0.79242 0.76257 1.17970 1.18577 1.18403 0.89076 0.87866 0.91840 0.88437 0.87823 0.86194 0.87778 0.86015 0.91466 0.89972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.48 10.28 71.23 0.73 -1.75 15 2 C 0.10 3.94 7.27 43.53 0.32 4.26 15 3 N -0.31 -10.37 12.50 -46.64 -0.58 -10.95 15 4 N -0.36 -9.76 3.98 -354.20 -1.41 -11.17 15 5 C 0.09 1.16 11.24 127.77 1.44 2.59 15 6 C 0.14 4.49 7.01 42.17 0.30 4.78 15 7 C -0.10 -2.34 9.93 71.24 0.71 -1.64 15 8 C -0.30 -12.50 6.00 -20.16 -0.12 -12.62 15 9 C 0.51 26.70 7.06 70.19 0.50 27.19 15 10 O -0.57 -33.80 16.36 19.67 0.32 -33.48 15 11 O -0.25 -14.29 8.58 10.34 0.09 -14.20 15 12 C -0.41 -25.80 10.11 67.94 0.69 -25.11 15 13 H 0.06 4.26 7.09 -2.91 -0.02 4.24 15 14 C 0.02 1.36 5.49 84.88 0.47 1.83 15 15 N -0.91 -55.47 13.96 21.63 0.30 -55.16 15 16 Si 0.98 44.64 28.62 68.60 1.96 46.61 15 17 H -0.26 -10.88 7.11 99.48 0.71 -10.17 15 18 H -0.26 -11.01 7.11 99.48 0.71 -10.30 15 19 H -0.26 -11.85 7.11 99.48 0.71 -11.15 15 20 H 0.09 2.67 8.14 -2.39 -0.02 2.65 15 21 H 0.10 2.66 8.14 -2.38 -0.02 2.64 15 22 H 0.06 2.28 8.00 -2.39 -0.02 2.26 15 23 H 0.10 0.99 8.14 -2.39 -0.02 0.97 15 24 H 0.10 1.18 8.14 -2.39 -0.02 1.16 15 25 H 0.12 0.88 7.02 -2.39 -0.02 0.86 15 26 H 0.10 2.25 8.14 -2.39 -0.02 2.23 15 27 H 0.12 1.73 7.05 -2.39 -0.02 1.71 15 28 H 0.07 2.01 7.97 -2.39 -0.02 1.99 15 29 H 0.29 15.83 8.31 -92.71 -0.77 15.06 15 Total: -1.00 -81.51 265.85 6.86 -74.65 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: 1.16 Total: 4.16 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 5.02 Total: -0.46 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -1.69 Total: -77.28 kcal Atomic # 8 Polarization: -48.09 SS G_CDS: 0.41 Total: -47.68 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.96 Total: 46.61 kcal Total: -81.51 6.86 -74.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809297113.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.164 kcal (2) G-P(sol) polarization free energy of solvation -81.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds