Wall clock time and date at job start Sun Mar 29 2020 22:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 119.99601 * 2 1 4 4 H 1.48504 * 109.46636 * 239.99914 * 3 2 1 5 5 H 1.48498 * 109.47594 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47239 * 120.00355 * 3 2 1 7 7 C 1.37871 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.50700 * 109.46769 * 179.72341 * 14 13 11 16 16 C 1.41379 * 126.80478 * 94.71449 * 15 14 13 17 17 C 1.35448 * 103.98624 * 179.88633 * 16 15 14 18 18 O 1.34036 * 106.44622 * 0.36342 * 17 16 15 19 19 N 1.20923 * 111.56867 * 359.74879 * 18 17 16 20 20 H 0.96991 * 119.99897 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 22 22 H 1.09011 * 109.46800 * 300.00341 * 9 7 2 23 23 H 1.08998 * 109.47508 * 59.99800 * 10 9 7 24 24 H 1.09002 * 109.47337 * 300.00085 * 10 9 7 25 25 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 26 26 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 27 27 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 28 28 H 1.07999 * 128.00526 * 0.02562 * 16 15 14 29 29 H 1.08006 * 126.77746 * 180.09567 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2792 -4.9672 -0.0011 13 7 2.1659 -6.1344 -0.0008 14 6 1.4334 -7.4031 -0.0075 15 6 2.4128 -8.5484 -0.0124 16 6 2.8917 -9.2581 1.1126 17 6 3.7343 -10.1781 0.5850 18 8 3.7270 -9.9830 -0.7410 19 7 2.9896 -9.0768 -1.0530 20 1 -0.4849 0.8400 0.0004 21 1 0.6242 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8898 23 1 2.8721 -3.6043 0.8894 24 1 2.8721 -3.6043 -0.8905 25 1 3.1359 -6.1343 -0.0004 26 1 0.8061 -7.4652 0.8818 27 1 0.8074 -7.4565 -0.8982 28 1 2.6416 -9.1041 2.1519 29 1 4.3034 -10.9194 1.1264 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812527115.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:47 Heat of formation + Delta-G solvation = -12.973998 kcal Electronic energy + Delta-G solvation = -14331.043426 eV Core-core repulsion = 11642.275577 eV Total energy + Delta-G solvation = -2688.767850 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.00307 -40.73682 -36.81902 -35.56336 -34.36562 -33.00691 -32.60330 -29.08401 -27.11541 -24.16633 -23.62963 -22.13259 -21.30620 -19.05393 -18.71433 -18.56386 -17.48677 -17.02886 -16.72363 -16.41103 -15.76739 -14.99129 -14.76430 -14.21044 -14.19311 -13.84603 -13.51345 -13.24743 -12.77952 -12.51646 -12.38371 -11.92470 -11.65642 -11.51990 -11.32328 -10.74767 -10.59056 -10.56460 -10.22769 -8.18003 -6.32270 0.54424 1.09919 1.42206 1.46794 1.54587 1.63833 2.28667 2.43264 2.49492 3.04288 3.14734 3.55680 3.96591 4.18924 4.34510 4.42915 4.51529 4.54251 4.60105 4.82374 5.05021 5.11311 5.28025 5.49570 5.62384 5.84856 6.17081 6.46989 6.85641 7.23318 7.28751 7.37872 8.94429 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.070044 B = 0.004290 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.652142 B = 6525.113658 C = 6736.508428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.076 0.924 9 C 0.042 3.958 10 C -0.118 4.118 11 C 0.516 3.484 12 O -0.584 6.584 13 N -0.716 5.716 14 C 0.200 3.800 15 C -0.019 4.019 16 C -0.228 4.228 17 C -0.037 4.037 18 O 0.102 5.898 19 N -0.385 5.385 20 H 0.263 0.737 21 H -0.018 1.018 22 H -0.015 1.015 23 H 0.108 0.892 24 H 0.102 0.898 25 H 0.414 0.586 26 H 0.095 0.905 27 H 0.063 0.937 28 H 0.196 0.804 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.651 -20.780 3.858 24.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.094 0.906 9 C 0.004 3.996 10 C -0.158 4.158 11 C 0.304 3.696 12 O -0.463 6.463 13 N -0.370 5.370 14 C 0.076 3.924 15 C -0.176 4.176 16 C -0.250 4.250 17 C -0.117 4.117 18 O 0.032 5.968 19 N -0.087 5.087 20 H 0.072 0.928 21 H 0.000 1.000 22 H 0.004 0.996 23 H 0.126 0.874 24 H 0.120 0.880 25 H 0.250 0.750 26 H 0.113 0.887 27 H 0.082 0.918 28 H 0.213 0.787 29 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 10.560 -20.428 2.530 23.135 hybrid contribution -0.003 0.900 0.739 1.164 sum 10.557 -19.528 3.269 22.439 Atomic orbital electron populations 1.70173 1.08288 1.27893 1.51358 1.26154 0.95760 1.03989 0.94621 0.85354 0.78032 0.77283 0.79450 1.18838 1.21291 1.18589 1.21685 0.94007 0.91619 1.50964 0.90608 1.18695 0.93701 0.92351 0.94845 1.21644 0.99377 0.89814 1.04961 1.21356 0.87824 0.86407 0.73976 1.90666 1.16485 1.88241 1.50939 1.45880 1.10877 1.04198 1.76079 1.19350 0.91147 0.78490 1.03387 1.23592 1.02250 1.01254 0.90550 1.23108 1.01815 0.98363 1.01674 1.26976 1.00754 1.01845 0.82163 1.84825 1.47580 1.38492 1.25869 1.73945 1.06942 1.02509 1.25326 0.92837 0.99985 0.99608 0.87359 0.87976 0.74975 0.88696 0.91842 0.78678 0.71570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.90 13.29 21.45 0.28 -59.62 15 2 C -0.01 -0.46 5.46 84.65 0.46 0.01 15 3 Si 0.98 44.56 29.54 68.60 2.03 46.59 15 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 15 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 15 6 H -0.26 -11.22 7.11 99.48 0.71 -10.51 15 7 C -0.54 -31.29 9.11 25.60 0.23 -31.06 15 8 H 0.08 3.95 7.74 -2.91 -0.02 3.92 15 9 C 0.04 2.35 4.26 29.85 0.13 2.48 15 10 C -0.12 -4.81 5.64 29.85 0.17 -4.64 15 11 C 0.52 20.33 7.83 87.66 0.69 21.02 15 12 O -0.58 -28.93 15.98 -3.04 -0.05 -28.98 15 13 N -0.72 -20.55 5.55 -466.79 -2.59 -23.14 15 14 C 0.20 5.27 6.26 85.63 0.54 5.81 15 15 C -0.02 -0.41 6.70 43.58 0.29 -0.12 15 16 C -0.23 -3.01 11.12 22.40 0.25 -2.76 15 17 C -0.04 -0.33 12.30 67.17 0.83 0.50 15 18 O 0.10 1.77 11.20 71.67 0.80 2.57 15 19 N -0.39 -9.09 12.07 -49.56 -0.60 -9.69 15 20 H 0.26 15.76 8.31 -92.71 -0.77 14.99 15 21 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 15 22 H -0.01 -0.92 8.10 -2.38 -0.02 -0.94 15 23 H 0.11 3.81 8.14 -2.39 -0.02 3.79 15 24 H 0.10 3.72 8.14 -2.39 -0.02 3.70 15 25 H 0.41 9.48 8.46 -92.71 -0.78 8.70 15 26 H 0.09 2.38 8.14 -2.38 -0.02 2.36 15 27 H 0.06 1.91 8.14 -2.39 -0.02 1.89 15 28 H 0.20 1.63 8.06 -2.91 -0.02 1.61 15 29 H 0.27 -0.65 8.06 -2.91 -0.02 -0.68 15 Total: -1.00 -80.24 267.01 3.84 -76.40 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: 0.38 Total: 4.62 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 3.58 Total: -8.76 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -2.90 Total: -92.44 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: 0.75 Total: -26.41 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -80.24 3.84 -76.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812527115.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.426 kcal (2) G-P(sol) polarization free energy of solvation -80.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds