Wall clock time and date at job start Sun Mar 29 2020 21:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86800 * 119.99686 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99752 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47086 * 120.00048 * 3 2 1 7 7 C 1.38754 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00293 * 179.97438 * 7 2 1 9 9 O 1.34924 * 119.99738 * 0.02562 * 7 2 1 10 10 C 1.34313 * 117.00023 * 179.97438 * 9 7 2 11 11 O 1.21207 * 119.99594 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99849 * 179.97438 * 10 9 7 13 13 C 1.50703 * 109.46849 * 180.02562 * 12 10 9 14 14 C 1.38273 * 119.98412 * 269.72502 * 13 12 10 15 15 C 1.38224 * 120.04908 * 179.72977 * 14 13 12 16 16 C 1.38223 * 120.02593 * 0.54433 * 15 14 13 17 17 C 1.38438 * 119.97296 * 359.72799 * 16 15 14 18 18 F 1.35104 * 120.02483 * 180.02562 * 17 16 15 19 19 C 1.38175 * 119.99056 * 90.00393 * 13 12 10 20 20 H 0.96996 * 119.99975 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47646 * 300.00339 * 12 10 9 22 22 H 1.08995 * 109.47329 * 60.00560 * 12 10 9 23 23 H 1.08003 * 119.97463 * 359.97438 * 14 13 12 24 24 H 1.07996 * 119.98566 * 180.27733 * 15 14 13 25 25 H 1.07999 * 120.01443 * 179.75295 * 16 15 14 26 26 H 1.08001 * 120.01205 * 359.97140 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.1021 1.6964 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1021 1.6965 1.2125 7 6 2.0083 -1.2016 0.0005 8 1 3.0883 -1.2016 0.0001 9 8 1.3337 -2.3701 0.0005 10 6 2.0653 -3.4965 0.0005 11 8 3.2757 -3.4329 0.0010 12 6 1.3811 -4.8392 0.0011 13 6 2.4191 -5.9318 0.0016 14 6 2.8909 -6.4373 -1.1958 15 6 3.8470 -7.4355 -1.1969 16 6 4.3244 -7.9374 -0.0008 17 6 3.8486 -7.4360 1.1987 18 9 4.3148 -7.9254 2.3685 19 6 2.8947 -6.4321 1.1986 20 1 -0.4850 0.8400 -0.0004 21 1 0.7586 -4.9295 0.8913 22 1 0.7581 -4.9300 -0.8886 23 1 2.5150 -6.0491 -2.1309 24 1 4.2181 -7.8264 -2.1328 25 1 5.0685 -8.7201 -0.0019 26 1 2.5231 -6.0399 2.1338 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845118454.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:37 Heat of formation + Delta-G solvation = -126.602350 kcal Electronic energy + Delta-G solvation = -14369.703943 eV Core-core repulsion = 11520.255742 eV Total energy + Delta-G solvation = -2849.448201 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.064 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.91122 -41.18605 -39.84874 -37.23443 -34.32315 -33.83475 -31.52384 -29.30942 -27.19423 -23.76788 -23.43146 -21.60922 -19.87455 -18.52843 -18.22239 -17.48459 -17.12586 -16.67228 -16.52812 -16.43876 -16.20360 -14.99813 -14.46517 -14.43149 -14.15296 -13.63906 -13.41635 -13.07447 -12.89510 -12.61190 -12.31026 -12.18830 -12.08104 -11.94399 -11.07978 -10.69833 -9.95256 -9.65654 -8.53891 -6.33887 0.14852 0.23824 1.32111 1.34255 1.49820 1.65575 2.11061 2.49260 2.97216 3.03492 3.22891 3.60461 3.81405 4.08765 4.24452 4.31421 4.46992 4.60552 4.68980 4.95592 5.08972 5.13458 5.19219 5.33585 5.51389 5.83252 5.94070 6.67772 6.91371 7.76903 8.66458 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.051163 B = 0.005799 C = 0.005690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.138624 B = 4827.060246 C = 4920.100249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.003 4.003 3 Si 1.015 2.985 4 H -0.261 1.261 5 H -0.259 1.259 6 H -0.264 1.264 7 C -0.422 4.422 8 H 0.080 0.920 9 O -0.245 6.245 10 C 0.398 3.602 11 O -0.578 6.578 12 C -0.060 4.060 13 C -0.050 4.050 14 C -0.123 4.123 15 C -0.085 4.085 16 C -0.153 4.153 17 C 0.077 3.923 18 F -0.148 7.148 19 C -0.156 4.156 20 H 0.279 0.721 21 H 0.122 0.878 22 H 0.133 0.867 23 H 0.143 0.857 24 H 0.169 0.831 25 H 0.161 0.839 26 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.828 -13.126 -1.949 13.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.203 4.203 3 Si 0.834 3.166 4 H -0.186 1.186 5 H -0.183 1.183 6 H -0.188 1.188 7 C -0.497 4.497 8 H 0.098 0.902 9 O -0.154 6.154 10 C 0.246 3.754 11 O -0.475 6.475 12 C -0.097 4.097 13 C -0.050 4.050 14 C -0.141 4.141 15 C -0.103 4.103 16 C -0.171 4.171 17 C 0.058 3.942 18 F -0.127 7.127 19 C -0.175 4.175 20 H 0.088 0.912 21 H 0.141 0.859 22 H 0.151 0.849 23 H 0.161 0.839 24 H 0.187 0.813 25 H 0.179 0.821 26 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.955 -12.977 -1.898 13.699 hybrid contribution 0.355 0.781 0.508 0.997 sum 4.309 -12.196 -1.390 13.009 Atomic orbital electron populations 1.70058 1.07568 1.29435 1.46931 1.26496 0.96873 1.02252 0.94721 0.84720 0.77634 0.74513 0.79722 1.18586 1.18310 1.18821 1.21350 0.92088 0.81267 1.55044 0.90240 1.83897 1.40298 1.14169 1.76997 1.24264 0.86706 0.88042 0.76368 1.90546 1.17189 1.88606 1.51183 1.20222 0.96914 0.84560 1.07979 1.19271 0.97129 0.95077 0.93521 1.21432 0.97735 0.97161 0.97738 1.21360 0.94966 0.95129 0.98799 1.21463 1.02372 1.02645 0.90616 1.17844 0.97486 0.96918 0.81949 1.91461 1.87557 1.86864 1.46823 1.21108 0.98973 0.97930 0.99487 0.91173 0.85950 0.84943 0.83939 0.81305 0.82141 0.85165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.22 13.67 21.62 0.30 -52.92 15 2 C 0.00 -0.18 5.49 84.87 0.47 0.29 15 3 Si 1.02 43.54 29.55 68.60 2.03 45.57 15 4 H -0.26 -10.77 7.11 99.48 0.71 -10.07 15 5 H -0.26 -10.21 7.11 99.48 0.71 -9.50 15 6 H -0.26 -10.96 7.11 99.48 0.71 -10.25 15 7 C -0.42 -25.67 9.65 67.94 0.66 -25.01 15 8 H 0.08 4.92 6.86 -2.91 -0.02 4.90 15 9 O -0.25 -14.32 9.75 14.81 0.14 -14.17 15 10 C 0.40 19.68 7.90 71.23 0.56 20.24 15 11 O -0.58 -31.66 15.27 20.78 0.32 -31.34 15 12 C -0.06 -2.04 5.94 29.10 0.17 -1.87 15 13 C -0.05 -1.57 4.37 -19.87 -0.09 -1.66 15 14 C -0.12 -3.27 9.70 22.27 0.22 -3.06 15 15 C -0.08 -1.84 10.04 22.26 0.22 -1.61 15 16 C -0.15 -3.51 10.03 22.31 0.22 -3.29 15 17 C 0.08 2.21 7.30 22.38 0.16 2.38 15 18 F -0.15 -4.33 17.27 44.97 0.78 -3.55 15 19 C -0.16 -4.92 9.68 22.31 0.22 -4.70 15 20 H 0.28 14.93 8.31 -92.71 -0.77 14.16 15 21 H 0.12 3.71 8.08 -2.39 -0.02 3.69 15 22 H 0.13 3.79 8.08 -2.39 -0.02 3.77 15 23 H 0.14 3.32 8.06 -2.91 -0.02 3.30 15 24 H 0.17 2.33 8.06 -2.91 -0.02 2.31 15 25 H 0.16 2.68 8.06 -2.91 -0.02 2.66 15 26 H 0.13 4.00 8.06 -2.91 -0.02 3.98 15 Total: -1.00 -73.35 250.49 7.57 -65.77 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 1.20 Total: 8.94 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: 2.81 Total: -18.29 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.30 Total: -52.92 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: 0.46 Total: -45.51 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.78 Total: -3.55 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -73.35 7.57 -65.77 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845118454.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.827 kcal (2) G-P(sol) polarization free energy of solvation -73.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds