Wall clock time and date at job start Sun Mar 29 2020 22:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46951 * 2 1 4 4 C 1.52998 * 109.47169 * 119.99329 * 2 1 3 5 5 C 1.50697 * 109.47505 * 295.00341 * 4 2 1 6 6 O 1.21209 * 120.00124 * 0.02562 * 5 4 2 7 7 O 1.34310 * 119.99898 * 179.97438 * 5 4 2 8 8 C 1.34917 * 116.99632 * 180.02562 * 7 5 4 9 9 H 1.08000 * 120.00758 * 359.97438 * 8 7 5 10 10 C 1.38756 * 119.99754 * 179.97438 * 8 7 5 11 11 N 1.31446 * 120.00119 * 0.02562 * 10 8 7 12 12 Si 1.86809 * 120.00105 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46942 * 0.02562 * 12 10 8 14 14 H 1.48492 * 109.46859 * 120.00227 * 12 10 8 15 15 H 1.48495 * 109.46894 * 240.00493 * 12 10 8 16 16 C 1.50697 * 109.47600 * 239.99946 * 2 1 3 17 17 C 1.34515 * 125.79159 * 119.99321 * 16 2 1 18 18 C 1.41385 * 106.84000 * 180.02562 * 17 16 2 19 19 C 1.34507 * 106.84104 * 0.02562 * 18 17 16 20 20 O 1.34300 * 108.42410 * 359.97438 * 19 18 17 21 21 H 1.09007 * 109.46496 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47143 * 300.00039 * 1 2 3 23 23 H 1.09003 * 109.47255 * 60.00390 * 1 2 3 24 24 H 1.09003 * 109.46867 * 55.01102 * 4 2 1 25 25 H 1.09002 * 109.47002 * 175.00309 * 4 2 1 26 26 H 0.97002 * 119.99689 * 179.97438 * 11 10 8 27 27 H 1.08001 * 126.57671 * 0.29417 * 17 16 2 28 28 H 1.08003 * 126.57418 * 180.02562 * 18 17 16 29 29 H 1.08001 * 125.78847 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4766 6 8 1.0112 1.0865 2.3634 7 8 1.9833 -0.3901 3.6960 8 6 1.5948 0.3537 4.7524 9 1 1.0352 1.2640 4.5955 10 6 1.9143 -0.0508 6.0407 11 7 2.5958 -1.1585 6.2318 12 14 1.3770 0.9794 7.5034 13 1 0.6295 2.1692 7.0230 14 1 0.5006 0.1675 8.3854 15 1 2.5735 1.4201 8.2645 16 6 2.0324 -0.7104 -1.2304 17 6 2.8090 -0.1719 -2.1877 18 6 3.0379 -1.1848 -3.1472 19 6 2.3872 -2.2814 -2.7192 20 8 1.7801 -1.9883 -1.5576 21 1 -0.3632 -1.0278 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.6055 -1.7197 1.2952 25 1 3.1263 -0.7993 1.2057 26 1 2.8194 -1.4410 7.1324 27 1 3.1886 0.8388 -2.2156 28 1 3.6231 -1.0951 -4.0506 29 1 2.3584 -3.2359 -3.2236 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859815946.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:07 Heat of formation + Delta-G solvation = -76.272380 kcal Electronic energy + Delta-G solvation = -14867.125489 eV Core-core repulsion = 12143.320064 eV Total energy + Delta-G solvation = -2723.805425 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.48548 -39.09203 -35.95872 -34.22558 -32.82345 -32.12549 -28.88285 -27.75037 -25.16374 -22.89204 -21.66593 -20.38038 -19.34681 -17.73403 -17.22567 -16.38790 -15.84747 -15.14925 -14.76293 -14.38192 -14.11577 -13.59522 -12.93210 -12.73840 -12.65846 -12.49965 -12.02943 -11.53285 -11.38064 -11.08127 -10.95386 -10.71306 -10.39208 -10.26226 -9.84577 -9.77409 -8.94558 -8.56341 -8.36054 -6.39350 -4.07273 1.83360 2.69254 3.10275 3.10939 3.20265 3.27728 3.54877 3.95460 4.47482 4.91622 5.06567 5.10253 5.14953 5.20712 5.36863 5.64555 5.86504 5.91444 6.02294 6.10137 6.14521 6.22257 6.40634 6.58115 6.66687 6.82719 7.25765 7.42155 7.97459 8.73414 9.09581 9.88049 10.78804 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.063574 B = 0.005493 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.328583 B = 5096.180361 C = 5298.630624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.005 3.995 3 H 0.108 0.892 4 C -0.101 4.101 5 C 0.400 3.600 6 O -0.555 6.555 7 O -0.215 6.215 8 C -0.382 4.382 9 H 0.097 0.903 10 C 0.041 3.959 11 N -0.865 5.865 12 Si 0.942 3.058 13 H -0.265 1.265 14 H -0.276 1.276 15 H -0.276 1.276 16 C 0.010 3.990 17 C -0.219 4.219 18 C -0.214 4.214 19 C -0.051 4.051 20 O -0.172 6.172 21 H 0.053 0.947 22 H 0.090 0.910 23 H 0.052 0.948 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.269 0.731 27 H 0.147 0.853 28 H 0.145 0.855 29 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.048 -1.255 -14.034 14.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 H 0.126 0.874 4 C -0.139 4.139 5 C 0.247 3.753 6 O -0.453 6.453 7 O -0.122 6.122 8 C -0.458 4.458 9 H 0.114 0.886 10 C -0.163 4.163 11 N -0.503 5.503 12 Si 0.767 3.233 13 H -0.190 1.190 14 H -0.202 1.202 15 H -0.202 1.202 16 C -0.040 4.040 17 C -0.238 4.238 18 C -0.233 4.233 19 C -0.119 4.119 20 O -0.067 6.067 21 H 0.072 0.928 22 H 0.109 0.891 23 H 0.071 0.929 24 H 0.113 0.887 25 H 0.112 0.888 26 H 0.078 0.922 27 H 0.164 0.836 28 H 0.163 0.837 29 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -0.295 -1.323 -13.686 13.753 hybrid contribution 0.065 0.431 0.420 0.606 sum -0.230 -0.892 -13.265 13.297 Atomic orbital electron populations 1.21982 0.93126 1.02237 1.03617 1.19581 0.97279 0.97989 0.86480 0.87426 1.21158 1.03005 0.99893 0.89859 1.23020 0.80823 0.85504 0.85937 1.90514 1.41437 1.26010 1.87317 1.83882 1.65838 1.49436 1.13043 1.21279 1.35888 1.06506 0.82129 0.88577 1.25346 0.96248 0.96724 0.97985 1.70009 1.36302 1.21473 1.22480 0.85625 0.78490 0.79332 0.79872 1.18950 1.20207 1.20203 1.22626 1.00459 0.82294 0.98657 1.21602 1.04628 1.01391 0.96165 1.21786 1.05559 0.93718 1.02264 1.23976 0.99764 1.00808 0.87345 1.84029 1.59316 1.28267 1.35135 0.92820 0.89131 0.92882 0.88663 0.88838 0.92159 0.83556 0.83743 0.78402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 8.92 37.16 0.33 -2.10 15 2 C 0.01 0.08 2.44 -91.77 -0.22 -0.14 15 3 H 0.11 1.74 7.91 -51.93 -0.41 1.33 15 4 C -0.10 -1.87 5.27 -27.89 -0.15 -2.02 15 5 C 0.40 9.74 7.62 36.00 0.27 10.01 15 6 O -0.55 -14.24 13.20 -19.05 -0.25 -14.49 15 7 O -0.22 -6.20 9.75 -20.69 -0.20 -6.40 15 8 C -0.38 -11.33 9.64 30.92 0.30 -11.04 15 9 H 0.10 2.86 6.86 -52.49 -0.36 2.50 15 10 C 0.04 1.16 5.49 -17.53 -0.10 1.06 15 11 N -0.87 -25.61 13.67 55.48 0.76 -24.85 15 12 Si 0.94 21.40 29.55 -169.99 -5.02 16.38 15 13 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 14 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 15 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 16 C 0.01 0.15 5.83 -35.63 -0.21 -0.06 15 17 C -0.22 -2.93 10.78 -39.70 -0.43 -3.35 15 18 C -0.21 -2.49 10.91 -39.70 -0.43 -2.93 15 19 C -0.05 -0.59 12.09 29.41 0.36 -0.23 15 20 O -0.17 -2.49 10.65 5.71 0.06 -2.43 15 21 H 0.05 0.82 8.14 -51.93 -0.42 0.39 15 22 H 0.09 1.68 5.95 -51.93 -0.31 1.37 15 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 24 H 0.10 1.68 8.14 -51.93 -0.42 1.26 15 25 H 0.09 1.62 8.14 -51.93 -0.42 1.20 15 26 H 0.27 7.25 8.31 -40.82 -0.34 6.92 15 27 H 0.15 1.72 8.06 -52.49 -0.42 1.30 15 28 H 0.14 1.30 8.06 -52.48 -0.42 0.88 15 29 H 0.20 1.46 8.06 -52.49 -0.42 1.03 15 LS Contribution 262.91 15.07 3.96 3.96 Total: -1.00 -32.88 262.91 -4.15 -37.03 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -3.17 Total: 1.61 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -0.28 Total: -10.80 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.76 Total: -24.85 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.39 Total: -23.33 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.88 -4.15 -37.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859815946.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.245 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds