Wall clock time and date at job start Sun Mar 29 2020 22:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34160 * 127.02823 * 2 1 4 4 O 1.34211 * 109.14846 * 180.25928 * 3 2 1 5 5 C 1.33624 * 110.92554 * 0.02562 * 4 3 2 6 6 C 1.36495 * 108.38550 * 359.97438 * 5 4 3 7 7 C 1.47229 * 127.20599 * 179.97438 * 6 5 4 8 8 O 1.21540 * 120.00480 * 180.02562 * 7 6 5 9 9 O 1.34777 * 120.00080 * 0.02563 * 7 6 5 10 10 C 1.45192 * 117.00326 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.46795 * 30.00136 * 10 9 7 12 12 C 1.52991 * 109.47306 * 270.00245 * 10 9 7 13 13 C 1.50701 * 109.47190 * 149.99737 * 10 9 7 14 14 H 1.08002 * 119.99782 * 0.02562 * 13 10 9 15 15 C 1.37872 * 120.00024 * 179.97438 * 13 10 9 16 16 N 1.31514 * 120.00356 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 120.00101 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.47373 * 90.00063 * 17 15 13 19 19 H 1.48496 * 109.47666 * 210.00130 * 17 15 13 20 20 H 1.48505 * 109.47094 * 330.00326 * 17 15 13 21 21 H 1.08994 * 109.47162 * 269.68266 * 1 2 3 22 22 H 1.08996 * 109.46805 * 29.68459 * 1 2 3 23 23 H 1.09005 * 109.46795 * 149.68480 * 1 2 3 24 24 H 1.07999 * 125.42072 * 0.24300 * 3 2 1 25 25 H 1.08007 * 125.81127 * 180.02562 * 5 4 3 26 26 H 1.08999 * 109.47331 * 60.00073 * 12 10 9 27 27 H 1.09002 * 109.47411 * 179.97438 * 12 10 9 28 28 H 1.08997 * 109.47390 * 299.99487 * 12 10 9 29 29 H 0.96998 * 120.00589 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0711 0.0000 4 8 3.5922 0.6590 -0.0057 5 6 3.6632 -0.6753 -0.0102 6 6 2.3926 -1.1741 -0.0068 7 6 1.9923 -2.5909 -0.0101 8 8 0.8142 -2.8897 -0.0069 9 8 2.9323 -3.5567 -0.0169 10 6 2.4651 -4.9314 -0.0193 11 1 1.5035 -4.9874 -0.5295 12 6 2.3067 -5.4188 1.4222 13 6 3.4656 -5.8008 -0.7365 14 1 4.3631 -5.3638 -1.1488 15 6 3.2357 -7.1541 -0.8653 16 7 2.1431 -7.6863 -0.3628 17 14 4.4761 -8.2318 -1.7536 18 1 5.4723 -8.7460 -0.7797 19 1 3.7729 -9.3735 -2.3916 20 1 5.1695 -7.4328 -2.7957 21 1 -0.3633 -0.0057 1.0276 22 1 -0.3633 0.8928 -0.5089 23 1 -0.3633 -0.8872 -0.5188 24 1 1.9892 2.1008 0.0037 25 1 4.5714 -1.2599 -0.0148 26 1 1.5830 -4.7900 1.9409 27 1 1.9554 -6.4507 1.4204 28 1 3.2682 -5.3629 1.9325 29 1 1.9815 -8.6384 -0.4530 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860544399.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:42 Heat of formation + Delta-G solvation = -82.957340 kcal Electronic energy + Delta-G solvation = -15040.368633 eV Core-core repulsion = 12316.273326 eV Total energy + Delta-G solvation = -2724.095306 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.43509 -39.15540 -35.67309 -33.68248 -33.25898 -30.73212 -29.34364 -27.13998 -25.32765 -23.98783 -21.29154 -20.24211 -19.45272 -17.68326 -16.53082 -16.12695 -16.06901 -15.17395 -14.72056 -14.56995 -14.00987 -13.30287 -12.99950 -12.85650 -12.42453 -12.18894 -11.85228 -11.39391 -11.23153 -11.07879 -10.83013 -10.38565 -10.28092 -9.69603 -9.53700 -9.38725 -8.90641 -8.59663 -8.49058 -6.18523 -4.25605 1.53003 2.10593 3.01471 3.24566 3.29913 3.33660 3.68548 3.70229 4.33796 4.70151 4.86988 5.14492 5.20913 5.55696 5.73079 5.80353 6.00157 6.09054 6.18571 6.53160 6.66961 6.90308 6.92446 7.05696 7.17347 7.59561 7.72983 7.94178 8.13816 8.65375 8.89078 9.39836 10.88984 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.046129 B = 0.006578 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.847707 B = 4255.887703 C = 4606.548580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.132 4.132 3 C -0.056 4.056 4 O -0.176 6.176 5 C 0.046 3.954 6 C -0.217 4.217 7 C 0.523 3.477 8 O -0.516 6.516 9 O -0.355 6.355 10 C 0.217 3.783 11 H 0.048 0.952 12 C -0.155 4.155 13 C -0.521 4.521 14 H 0.069 0.931 15 C 0.062 3.938 16 N -0.889 5.889 17 Si 0.912 3.088 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.272 1.272 21 H 0.069 0.931 22 H 0.063 0.937 23 H 0.083 0.917 24 H 0.206 0.794 25 H 0.222 0.778 26 H 0.016 0.984 27 H 0.100 0.900 28 H 0.036 0.964 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.104 13.999 1.115 14.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.133 4.133 3 C -0.122 4.122 4 O -0.072 6.072 5 C -0.024 4.024 6 C -0.220 4.220 7 C 0.368 3.632 8 O -0.407 6.407 9 O -0.272 6.272 10 C 0.165 3.835 11 H 0.065 0.935 12 C -0.213 4.213 13 C -0.559 4.559 14 H 0.087 0.913 15 C -0.140 4.140 16 N -0.527 5.527 17 Si 0.739 3.261 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.196 1.196 21 H 0.088 0.912 22 H 0.082 0.918 23 H 0.102 0.898 24 H 0.222 0.778 25 H 0.238 0.762 26 H 0.035 0.965 27 H 0.118 0.882 28 H 0.056 0.944 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.902 13.864 1.130 13.939 hybrid contribution 0.340 -0.861 -0.361 0.994 sum 1.242 13.003 0.769 13.085 Atomic orbital electron populations 1.20247 0.88414 1.03170 1.02578 1.21429 0.97268 0.90364 1.04282 1.23595 0.79869 0.99426 1.09300 1.83773 1.29501 1.22728 1.71169 1.24750 0.99590 0.80202 0.97863 1.20819 0.93593 0.92194 1.15387 1.19924 0.84538 0.85491 0.73255 1.90751 1.19187 1.83964 1.46777 1.86531 1.39000 1.19551 1.82111 1.20648 0.97116 0.71020 0.94762 0.93469 1.22164 0.98735 1.03810 0.96551 1.21019 1.06576 0.92025 1.36279 0.91305 1.24886 0.95962 0.97523 0.95606 1.69899 1.25224 1.12786 1.44762 0.86264 0.80575 0.79583 0.79644 1.20360 1.20969 1.19624 0.91212 0.91814 0.89806 0.77758 0.76167 0.96482 0.88205 0.94437 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.16 10.00 36.00 0.36 -0.80 15 2 C -0.13 -1.96 6.37 -102.48 -0.65 -2.61 15 3 C -0.06 -0.66 11.96 29.30 0.35 -0.31 15 4 O -0.18 -2.27 10.52 7.74 0.08 -2.19 15 5 C 0.05 0.65 11.94 30.10 0.36 1.01 15 6 C -0.22 -3.85 6.31 -103.30 -0.65 -4.50 15 7 C 0.52 11.70 7.93 34.38 0.27 11.98 15 8 O -0.52 -12.71 14.67 -19.30 -0.28 -12.99 15 9 O -0.36 -8.63 9.72 -40.70 -0.40 -9.02 15 10 C 0.22 5.91 2.56 -27.89 -0.07 5.84 15 11 H 0.05 1.42 7.16 -51.93 -0.37 1.05 15 12 C -0.15 -3.99 9.33 37.15 0.35 -3.64 15 13 C -0.52 -14.68 8.90 -34.44 -0.31 -14.99 15 14 H 0.07 1.90 7.81 -52.49 -0.41 1.49 15 15 C 0.06 1.72 5.30 -17.82 -0.09 1.63 15 16 N -0.89 -25.37 11.32 55.43 0.63 -24.75 15 17 Si 0.91 21.08 29.54 -169.99 -5.02 16.06 15 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 19 H -0.28 -6.49 7.11 56.52 0.40 -6.08 15 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 21 H 0.07 0.88 8.14 -51.93 -0.42 0.45 15 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 15 23 H 0.08 1.34 6.92 -51.93 -0.36 0.98 15 24 H 0.21 1.47 8.06 -52.49 -0.42 1.05 15 25 H 0.22 2.60 8.06 -52.48 -0.42 2.18 15 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 15 27 H 0.10 2.73 6.07 -51.93 -0.32 2.41 15 28 H 0.04 0.91 8.14 -51.93 -0.42 0.49 15 29 H 0.27 7.14 8.31 -40.82 -0.34 6.80 15 LS Contribution 262.64 15.07 3.96 3.96 Total: -1.00 -31.75 262.64 -4.25 -36.00 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -3.13 Total: -0.67 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -0.09 Total: -6.40 kcal Atomic # 7 Polarization: -25.37 SS G_CDS: 0.63 Total: -24.75 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.60 Total: -24.20 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.75 -4.25 -36.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860544399.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.961 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds