Wall clock time and date at job start Sun Mar 29 2020 22:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34160 * 127.02823 * 2 1 4 4 O 1.34211 * 109.14846 * 180.25928 * 3 2 1 5 5 C 1.33624 * 110.92554 * 0.02562 * 4 3 2 6 6 C 1.36495 * 108.38550 * 359.97438 * 5 4 3 7 7 C 1.47229 * 127.20599 * 179.97438 * 6 5 4 8 8 O 1.21540 * 120.00480 * 180.02562 * 7 6 5 9 9 O 1.34777 * 120.00080 * 0.02563 * 7 6 5 10 10 C 1.45192 * 117.00326 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.46795 * 30.00136 * 10 9 7 12 12 C 1.52991 * 109.47306 * 270.00245 * 10 9 7 13 13 C 1.50701 * 109.47190 * 149.99737 * 10 9 7 14 14 H 1.08002 * 119.99782 * 0.02562 * 13 10 9 15 15 C 1.37872 * 120.00024 * 179.97438 * 13 10 9 16 16 N 1.31514 * 120.00356 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 120.00101 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.47373 * 90.00063 * 17 15 13 19 19 H 1.48496 * 109.47666 * 210.00130 * 17 15 13 20 20 H 1.48505 * 109.47094 * 330.00326 * 17 15 13 21 21 H 1.08994 * 109.47162 * 269.68266 * 1 2 3 22 22 H 1.08996 * 109.46805 * 29.68459 * 1 2 3 23 23 H 1.09005 * 109.46795 * 149.68480 * 1 2 3 24 24 H 1.07999 * 125.42072 * 0.24300 * 3 2 1 25 25 H 1.08007 * 125.81127 * 180.02562 * 5 4 3 26 26 H 1.08999 * 109.47331 * 60.00073 * 12 10 9 27 27 H 1.09002 * 109.47411 * 179.97438 * 12 10 9 28 28 H 1.08997 * 109.47390 * 299.99487 * 12 10 9 29 29 H 0.96998 * 120.00589 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0711 0.0000 4 8 3.5922 0.6590 -0.0057 5 6 3.6632 -0.6753 -0.0102 6 6 2.3926 -1.1741 -0.0068 7 6 1.9923 -2.5909 -0.0101 8 8 0.8142 -2.8897 -0.0069 9 8 2.9323 -3.5567 -0.0169 10 6 2.4651 -4.9314 -0.0193 11 1 1.5035 -4.9874 -0.5295 12 6 2.3067 -5.4188 1.4222 13 6 3.4656 -5.8008 -0.7365 14 1 4.3631 -5.3638 -1.1488 15 6 3.2357 -7.1541 -0.8653 16 7 2.1431 -7.6863 -0.3628 17 14 4.4761 -8.2318 -1.7536 18 1 5.4723 -8.7460 -0.7797 19 1 3.7729 -9.3735 -2.3916 20 1 5.1695 -7.4328 -2.7957 21 1 -0.3633 -0.0057 1.0276 22 1 -0.3633 0.8928 -0.5089 23 1 -0.3633 -0.8872 -0.5188 24 1 1.9892 2.1008 0.0037 25 1 4.5714 -1.2599 -0.0148 26 1 1.5830 -4.7900 1.9409 27 1 1.9554 -6.4507 1.4204 28 1 3.2682 -5.3629 1.9325 29 1 1.9815 -8.6384 -0.4530 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860544399.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:42 Heat of formation + Delta-G solvation = -102.822686 kcal Electronic energy + Delta-G solvation = -15041.230059 eV Core-core repulsion = 12316.273326 eV Total energy + Delta-G solvation = -2724.956733 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.54475 -40.99606 -37.57139 -35.35025 -34.83592 -32.21597 -31.18157 -28.16891 -27.48247 -25.57398 -23.06031 -21.47522 -21.01634 -19.18667 -18.50700 -17.82435 -17.29536 -16.82891 -16.49446 -16.21585 -15.32850 -14.68866 -14.49862 -14.21704 -13.98245 -13.83993 -13.46511 -13.22464 -13.02305 -12.80790 -12.50881 -12.41324 -12.16522 -11.62054 -11.47675 -11.01956 -10.67321 -10.58953 -9.64124 -8.29746 -6.47204 0.20752 1.02471 1.41889 1.44564 1.55488 1.83016 2.09545 2.14558 2.42750 3.01107 3.58781 3.71009 4.12728 4.31725 4.50176 4.54229 4.76016 4.78026 4.79725 4.91946 5.00115 5.03207 5.16180 5.44745 5.50415 5.59967 5.88122 5.96096 6.04425 6.58372 6.94079 7.24667 8.78358 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.046129 B = 0.006578 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.847707 B = 4255.887703 C = 4606.548580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.165 4.165 3 C -0.021 4.021 4 O -0.166 6.166 5 C 0.073 3.927 6 C -0.266 4.266 7 C 0.517 3.483 8 O -0.551 6.551 9 O -0.358 6.358 10 C 0.219 3.781 11 H 0.005 0.995 12 C -0.142 4.142 13 C -0.548 4.548 14 H 0.071 0.929 15 C 0.015 3.985 16 N -0.918 5.918 17 Si 0.986 3.014 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.264 1.264 21 H 0.071 0.929 22 H 0.101 0.899 23 H 0.045 0.955 24 H 0.259 0.741 25 H 0.244 0.756 26 H 0.020 0.980 27 H 0.082 0.918 28 H 0.048 0.952 29 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.809 15.771 0.839 16.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.166 4.166 3 C -0.086 4.086 4 O -0.060 6.060 5 C 0.003 3.997 6 C -0.268 4.268 7 C 0.365 3.635 8 O -0.445 6.445 9 O -0.275 6.275 10 C 0.165 3.835 11 H 0.023 0.977 12 C -0.199 4.199 13 C -0.586 4.586 14 H 0.089 0.911 15 C -0.184 4.184 16 N -0.556 5.556 17 Si 0.809 3.191 18 H -0.191 1.191 19 H -0.204 1.204 20 H -0.188 1.188 21 H 0.090 0.910 22 H 0.119 0.881 23 H 0.064 0.936 24 H 0.274 0.726 25 H 0.260 0.740 26 H 0.039 0.961 27 H 0.101 0.899 28 H 0.067 0.933 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.610 15.669 0.864 15.908 hybrid contribution -0.227 -1.292 -0.266 1.338 sum 2.383 14.377 0.598 14.586 Atomic orbital electron populations 1.20220 0.88014 1.03137 1.02685 1.21694 0.98040 0.90201 1.06694 1.24457 0.78392 1.00563 1.05188 1.83847 1.30238 1.21634 1.70262 1.25059 0.98969 0.80831 0.94881 1.20796 0.96288 0.90049 1.19674 1.20750 0.83904 0.86917 0.71946 1.90723 1.20458 1.84668 1.48616 1.86509 1.39488 1.18765 1.82717 1.20375 0.95264 0.72835 0.94978 0.97671 1.21986 0.99261 1.02677 0.96018 1.21293 1.06911 0.92912 1.37447 0.91126 1.25871 0.97915 0.98674 0.95975 1.70023 1.26876 1.13388 1.45309 0.85130 0.77988 0.77405 0.78561 1.19058 1.20380 1.18845 0.91048 0.88076 0.93565 0.72574 0.74042 0.96105 0.89915 0.93306 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.18 10.00 71.23 0.71 -1.47 15 2 C -0.17 -4.62 6.37 -18.48 -0.12 -4.74 15 3 C -0.02 -0.41 11.96 66.89 0.80 0.39 15 4 O -0.17 -3.62 10.52 4.77 0.05 -3.56 15 5 C 0.07 1.93 11.94 67.41 0.80 2.74 15 6 C -0.27 -9.32 6.31 -19.01 -0.12 -9.44 15 7 C 0.52 24.06 7.93 70.18 0.56 24.62 15 8 O -0.55 -28.87 14.67 19.71 0.29 -28.58 15 9 O -0.36 -17.95 9.72 -56.88 -0.55 -18.51 15 10 C 0.22 12.41 2.56 29.85 0.08 12.48 15 11 H 0.01 0.35 7.16 -2.38 -0.02 0.33 15 12 C -0.14 -7.53 9.33 71.98 0.67 -6.86 15 13 C -0.55 -31.47 8.90 25.60 0.23 -31.24 15 14 H 0.07 3.92 7.81 -2.91 -0.02 3.90 15 15 C 0.02 0.85 5.30 84.65 0.45 1.30 15 16 N -0.92 -53.37 11.32 21.45 0.24 -53.12 15 17 Si 0.99 42.94 29.54 68.60 2.03 44.97 15 18 H -0.27 -11.02 7.11 99.48 0.71 -10.31 15 19 H -0.28 -11.80 7.11 99.48 0.71 -11.09 15 20 H -0.26 -11.11 7.11 99.48 0.71 -10.41 15 21 H 0.07 1.76 8.14 -2.39 -0.02 1.74 15 22 H 0.10 1.77 8.14 -2.39 -0.02 1.75 15 23 H 0.05 1.54 6.92 -2.38 -0.02 1.52 15 24 H 0.26 2.04 8.06 -2.91 -0.02 2.02 15 25 H 0.24 5.13 8.06 -2.91 -0.02 5.11 15 26 H 0.02 1.03 8.14 -2.39 -0.02 1.01 15 27 H 0.08 4.68 6.07 -2.39 -0.01 4.66 15 28 H 0.05 2.41 8.14 -2.39 -0.02 2.39 15 29 H 0.27 14.69 8.31 -92.71 -0.77 13.92 15 Total: -1.00 -71.76 262.64 7.27 -64.49 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: 1.15 Total: 6.54 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 4.06 Total: -12.22 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.24 Total: -53.12 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -0.21 Total: -50.65 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -71.76 7.27 -64.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860544399.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.336 kcal (2) G-P(sol) polarization free energy of solvation -71.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds