Wall clock time and date at job start Sun Mar 29 2020 22:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34153 * 127.02389 * 2 1 4 4 O 1.34223 * 109.14429 * 179.97438 * 3 2 1 5 5 C 1.33627 * 110.92383 * 359.72287 * 4 3 2 6 6 C 1.36500 * 108.38210 * 0.44983 * 5 4 3 7 7 C 1.47234 * 127.20474 * 179.83432 * 6 5 4 8 8 O 1.21535 * 120.00516 * 179.68483 * 7 6 5 9 9 O 1.34778 * 119.99488 * 359.68709 * 7 6 5 10 10 C 1.45201 * 116.99693 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.46986 * 329.99509 * 10 9 7 12 12 C 1.52999 * 109.47090 * 89.99777 * 10 9 7 13 13 C 1.50704 * 109.46938 * 209.99902 * 10 9 7 14 14 H 1.08005 * 119.99788 * 325.93422 * 13 10 9 15 15 C 1.37873 * 120.00297 * 145.92851 * 13 10 9 16 16 N 1.31513 * 120.00106 * 177.74121 * 15 13 10 17 17 Si 1.86803 * 119.99632 * 357.74245 * 15 13 10 18 18 H 1.48501 * 109.47420 * 274.92330 * 17 15 13 19 19 H 1.48499 * 109.47493 * 34.92632 * 17 15 13 20 20 H 1.48506 * 109.46880 * 154.92313 * 17 15 13 21 21 H 1.08997 * 109.47395 * 269.99832 * 1 2 3 22 22 H 1.08995 * 109.47489 * 30.00056 * 1 2 3 23 23 H 1.09004 * 109.47225 * 150.00429 * 1 2 3 24 24 H 1.08001 * 125.42869 * 0.02562 * 3 2 1 25 25 H 1.07998 * 125.81140 * 180.28775 * 5 4 3 26 26 H 1.08994 * 109.46933 * 56.44338 * 12 10 9 27 27 H 1.09005 * 109.46491 * 176.44111 * 12 10 9 28 28 H 1.08998 * 109.47231 * 296.43610 * 12 10 9 29 29 H 0.97007 * 119.99773 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3148 1.0711 0.0000 4 8 3.5922 0.6590 0.0006 5 6 3.6632 -0.6754 0.0070 6 6 2.3926 -1.1741 0.0007 7 6 1.9922 -2.5909 0.0009 8 8 0.8142 -2.8897 0.0006 9 8 2.9323 -3.5567 0.0016 10 6 2.4650 -4.9315 0.0012 11 1 1.5051 -4.9890 0.5144 12 6 2.3019 -5.4143 -1.4414 13 6 3.4679 -5.8031 0.7123 14 1 4.5224 -5.5800 0.6430 15 6 3.0393 -6.8852 1.4514 16 7 3.9168 -7.6717 2.0353 17 14 1.2122 -7.2341 1.6233 18 1 0.6583 -6.4322 2.7438 19 1 0.5177 -6.8689 0.3626 20 1 1.0081 -8.6787 1.9003 21 1 -0.3634 0.0000 1.0276 22 1 -0.3634 0.8899 -0.5138 23 1 -0.3634 -0.8900 -0.5138 24 1 1.9892 2.1008 0.0004 25 1 4.5713 -1.2599 0.0132 26 1 3.2464 -5.2975 -1.9726 27 1 2.0120 -6.4651 -1.4422 28 1 1.5308 -4.8244 -1.9370 29 1 3.6152 -8.4333 2.5551 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860544400.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:44 Heat of formation + Delta-G solvation = -82.003057 kcal Electronic energy + Delta-G solvation = -15117.204292 eV Core-core repulsion = 12393.150366 eV Total energy + Delta-G solvation = -2724.053926 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.47433 -39.30676 -35.80975 -33.73732 -33.09518 -31.04355 -30.07154 -27.18479 -25.41563 -24.06627 -21.23414 -20.22778 -19.53949 -17.92572 -16.79700 -16.31116 -16.14268 -15.35586 -14.89686 -14.47824 -13.88523 -13.39724 -13.05574 -12.79522 -12.62315 -12.44273 -12.34222 -11.75264 -11.44824 -11.15109 -11.00620 -10.66722 -10.04268 -9.77200 -9.52003 -9.43739 -9.13023 -8.74379 -8.63109 -6.28580 -4.32821 1.47715 2.05723 2.97646 3.20587 3.28885 3.34806 3.55655 3.59949 4.25821 4.65709 4.80601 5.05809 5.17394 5.50172 5.65337 5.75282 5.94400 5.99353 6.11996 6.16848 6.44014 6.46614 6.53329 6.70372 7.01838 7.13530 7.35446 7.51026 8.23430 8.64795 8.81298 9.30509 10.82687 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.040711 B = 0.007470 C = 0.006925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.607643 B = 3747.515798 C = 4042.554228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.132 4.132 3 C -0.056 4.056 4 O -0.175 6.175 5 C 0.050 3.950 6 C -0.221 4.221 7 C 0.523 3.477 8 O -0.521 6.521 9 O -0.346 6.346 10 C 0.185 3.815 11 H 0.047 0.953 12 C -0.154 4.154 13 C -0.519 4.519 14 H 0.086 0.914 15 C 0.082 3.918 16 N -0.882 5.882 17 Si 0.870 3.130 18 H -0.270 1.270 19 H -0.260 1.260 20 H -0.281 1.281 21 H 0.070 0.930 22 H 0.063 0.937 23 H 0.082 0.918 24 H 0.206 0.794 25 H 0.223 0.777 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.030 0.970 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.548 14.755 -4.268 15.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 C -0.121 4.121 4 O -0.071 6.071 5 C -0.020 4.020 6 C -0.223 4.223 7 C 0.368 3.632 8 O -0.413 6.413 9 O -0.263 6.263 10 C 0.132 3.868 11 H 0.065 0.935 12 C -0.212 4.212 13 C -0.556 4.556 14 H 0.104 0.896 15 C -0.122 4.122 16 N -0.519 5.519 17 Si 0.696 3.304 18 H -0.196 1.196 19 H -0.184 1.184 20 H -0.207 1.207 21 H 0.088 0.912 22 H 0.082 0.918 23 H 0.101 0.899 24 H 0.223 0.777 25 H 0.240 0.760 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.614 14.628 -4.153 15.629 hybrid contribution -1.120 -0.523 0.225 1.257 sum -4.734 14.105 -3.927 15.388 Atomic orbital electron populations 1.20244 0.88449 1.03095 1.02605 1.21414 0.97229 0.90360 1.04361 1.23603 0.79862 0.99440 1.09200 1.83787 1.29493 1.22720 1.71070 1.24790 0.99611 0.80208 0.97371 1.20793 0.93660 0.92059 1.15826 1.20053 0.84570 0.85640 0.72902 1.90735 1.19263 1.84015 1.47298 1.86711 1.38857 1.18690 1.81996 1.20973 0.97084 0.74143 0.94620 0.93530 1.22263 1.00166 1.00970 0.97816 1.20786 0.94760 1.09037 1.31063 0.89641 1.24893 0.97911 0.95664 0.93745 1.69853 1.34089 1.15996 1.31943 0.86960 0.85609 0.77875 0.79987 1.19564 1.18432 1.20702 0.91176 0.91800 0.89923 0.77735 0.76042 0.92542 0.91673 0.95091 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.12 10.00 36.01 0.36 -0.76 15 2 C -0.13 -1.91 6.37 -102.48 -0.65 -2.56 15 3 C -0.06 -0.64 11.96 29.29 0.35 -0.28 15 4 O -0.18 -2.22 10.52 7.70 0.08 -2.14 15 5 C 0.05 0.70 11.94 30.11 0.36 1.06 15 6 C -0.22 -3.81 6.31 -103.29 -0.65 -4.46 15 7 C 0.52 11.26 7.93 34.39 0.27 11.54 15 8 O -0.52 -12.23 14.67 -19.29 -0.28 -12.51 15 9 O -0.35 -8.11 9.72 -40.70 -0.40 -8.50 15 10 C 0.18 4.69 2.16 -27.88 -0.06 4.63 15 11 H 0.05 1.24 4.48 -51.93 -0.23 1.01 15 12 C -0.15 -3.47 9.50 37.16 0.35 -3.12 15 13 C -0.52 -14.76 9.25 -34.44 -0.32 -15.07 15 14 H 0.09 2.60 8.06 -52.48 -0.42 2.17 15 15 C 0.08 2.35 5.47 -17.82 -0.10 2.25 15 16 N -0.88 -26.26 13.96 55.43 0.77 -25.48 15 17 Si 0.87 21.55 26.71 -169.99 -4.54 17.01 15 18 H -0.27 -6.71 7.11 56.52 0.40 -6.31 15 19 H -0.26 -6.27 6.84 56.52 0.39 -5.89 15 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 21 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 15 23 H 0.08 1.25 6.92 -51.93 -0.36 0.89 15 24 H 0.21 1.43 8.06 -52.49 -0.42 1.00 15 25 H 0.22 2.59 8.06 -52.49 -0.42 2.16 15 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 15 27 H 0.06 1.44 7.87 -51.93 -0.41 1.03 15 28 H 0.03 0.64 8.14 -51.93 -0.42 0.22 15 29 H 0.27 7.48 8.31 -40.82 -0.34 7.14 15 LS Contribution 261.85 15.07 3.95 3.95 Total: -1.00 -32.34 261.85 -3.61 -35.95 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -3.11 Total: -1.50 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -0.09 Total: -6.78 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 0.77 Total: -25.48 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.60 Total: -23.15 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.54 Total: 17.01 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.34 -3.61 -35.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860544400.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.054 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds