Wall clock time and date at job start Sun Mar 29 2020 22:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34153 * 127.02389 * 2 1 4 4 O 1.34223 * 109.14429 * 179.97438 * 3 2 1 5 5 C 1.33627 * 110.92383 * 359.72287 * 4 3 2 6 6 C 1.36500 * 108.38210 * 0.44983 * 5 4 3 7 7 C 1.47234 * 127.20474 * 179.83432 * 6 5 4 8 8 O 1.21535 * 120.00516 * 179.68483 * 7 6 5 9 9 O 1.34778 * 119.99488 * 359.68709 * 7 6 5 10 10 C 1.45201 * 116.99693 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.46986 * 329.99509 * 10 9 7 12 12 C 1.52999 * 109.47090 * 89.99777 * 10 9 7 13 13 C 1.50704 * 109.46938 * 209.99902 * 10 9 7 14 14 H 1.08005 * 119.99788 * 325.93422 * 13 10 9 15 15 C 1.37873 * 120.00297 * 145.92851 * 13 10 9 16 16 N 1.31513 * 120.00106 * 177.74121 * 15 13 10 17 17 Si 1.86803 * 119.99632 * 357.74245 * 15 13 10 18 18 H 1.48501 * 109.47420 * 274.92330 * 17 15 13 19 19 H 1.48499 * 109.47493 * 34.92632 * 17 15 13 20 20 H 1.48506 * 109.46880 * 154.92313 * 17 15 13 21 21 H 1.08997 * 109.47395 * 269.99832 * 1 2 3 22 22 H 1.08995 * 109.47489 * 30.00056 * 1 2 3 23 23 H 1.09004 * 109.47225 * 150.00429 * 1 2 3 24 24 H 1.08001 * 125.42869 * 0.02562 * 3 2 1 25 25 H 1.07998 * 125.81140 * 180.28775 * 5 4 3 26 26 H 1.08994 * 109.46933 * 56.44338 * 12 10 9 27 27 H 1.09005 * 109.46491 * 176.44111 * 12 10 9 28 28 H 1.08998 * 109.47231 * 296.43610 * 12 10 9 29 29 H 0.97007 * 119.99773 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3148 1.0711 0.0000 4 8 3.5922 0.6590 0.0006 5 6 3.6632 -0.6754 0.0070 6 6 2.3926 -1.1741 0.0007 7 6 1.9922 -2.5909 0.0009 8 8 0.8142 -2.8897 0.0006 9 8 2.9323 -3.5567 0.0016 10 6 2.4650 -4.9315 0.0012 11 1 1.5051 -4.9890 0.5144 12 6 2.3019 -5.4143 -1.4414 13 6 3.4679 -5.8031 0.7123 14 1 4.5224 -5.5800 0.6430 15 6 3.0393 -6.8852 1.4514 16 7 3.9168 -7.6717 2.0353 17 14 1.2122 -7.2341 1.6233 18 1 0.6583 -6.4322 2.7438 19 1 0.5177 -6.8689 0.3626 20 1 1.0081 -8.6787 1.9003 21 1 -0.3634 0.0000 1.0276 22 1 -0.3634 0.8899 -0.5138 23 1 -0.3634 -0.8900 -0.5138 24 1 1.9892 2.1008 0.0004 25 1 4.5713 -1.2599 0.0132 26 1 3.2464 -5.2975 -1.9726 27 1 2.0120 -6.4651 -1.4422 28 1 1.5308 -4.8244 -1.9370 29 1 3.6152 -8.4333 2.5551 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860544400.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:43 Heat of formation + Delta-G solvation = -102.987253 kcal Electronic energy + Delta-G solvation = -15118.114235 eV Core-core repulsion = 12393.150366 eV Total energy + Delta-G solvation = -2724.963869 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.54904 -41.05800 -37.60695 -35.20755 -34.83808 -32.79837 -31.48421 -28.16450 -27.47921 -25.57947 -22.87879 -21.45262 -21.07408 -19.54951 -18.60489 -18.04081 -17.31422 -16.86132 -16.53548 -16.10357 -15.26959 -14.82981 -14.59969 -14.35840 -14.13980 -14.02313 -13.60794 -13.46566 -13.09440 -12.95933 -12.57268 -12.49853 -11.97783 -11.57053 -11.43447 -11.19889 -10.91032 -10.65104 -9.64420 -8.48630 -6.58520 0.19058 1.02071 1.24029 1.28027 1.38567 1.78119 2.07531 2.13044 2.18643 2.90165 3.58154 3.70026 4.07618 4.20568 4.32304 4.50966 4.56180 4.62607 4.78701 4.82902 4.94672 5.01831 5.05417 5.28344 5.35610 5.46132 5.63388 5.95450 6.13347 6.49824 6.89105 7.09830 8.66511 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.040711 B = 0.007470 C = 0.006925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.607643 B = 3747.515798 C = 4042.554228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.162 4.162 3 C -0.024 4.024 4 O -0.167 6.167 5 C 0.071 3.929 6 C -0.266 4.266 7 C 0.519 3.481 8 O -0.548 6.548 9 O -0.355 6.355 10 C 0.185 3.815 11 H 0.035 0.965 12 C -0.148 4.148 13 C -0.531 4.531 14 H 0.051 0.949 15 C 0.037 3.963 16 N -0.922 5.922 17 Si 0.927 3.073 18 H -0.272 1.272 19 H -0.250 1.250 20 H -0.265 1.265 21 H 0.069 0.931 22 H 0.100 0.900 23 H 0.050 0.950 24 H 0.257 0.743 25 H 0.241 0.759 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.374 16.911 -4.766 18.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.164 4.164 3 C -0.088 4.088 4 O -0.061 6.061 5 C 0.001 3.999 6 C -0.269 4.269 7 C 0.367 3.633 8 O -0.442 6.442 9 O -0.272 6.272 10 C 0.132 3.868 11 H 0.052 0.948 12 C -0.206 4.206 13 C -0.568 4.568 14 H 0.070 0.930 15 C -0.164 4.164 16 N -0.560 5.560 17 Si 0.749 3.251 18 H -0.197 1.197 19 H -0.174 1.174 20 H -0.189 1.189 21 H 0.088 0.912 22 H 0.119 0.881 23 H 0.069 0.931 24 H 0.273 0.727 25 H 0.257 0.743 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.431 16.802 -4.662 17.991 hybrid contribution -0.771 -1.044 0.376 1.351 sum -5.202 15.758 -4.286 17.139 Atomic orbital electron populations 1.20230 0.87827 1.03329 1.02664 1.21685 0.98070 0.90070 1.06536 1.24470 0.78413 1.00650 1.05300 1.83852 1.30340 1.21680 1.70254 1.25055 0.99098 0.80856 0.94906 1.20811 0.96114 0.90282 1.19654 1.20722 0.83952 0.86809 0.71837 1.90706 1.20124 1.84561 1.48795 1.86659 1.39584 1.18310 1.82659 1.20799 0.95299 0.74935 0.95809 0.94754 1.22165 1.01181 1.01174 0.96060 1.20904 0.93905 1.10176 1.31847 0.93037 1.25617 1.02198 0.95313 0.93314 1.69949 1.36218 1.16803 1.32997 0.86056 0.80308 0.78492 0.80202 1.19691 1.17377 1.18940 0.91228 0.88128 0.93070 0.72691 0.74341 0.91631 0.91430 0.93702 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.02 10.00 71.24 0.71 -1.30 15 2 C -0.16 -4.31 6.37 -18.48 -0.12 -4.43 15 3 C -0.02 -0.44 11.96 66.89 0.80 0.36 15 4 O -0.17 -3.62 10.52 4.63 0.05 -3.57 15 5 C 0.07 1.87 11.94 67.41 0.80 2.67 15 6 C -0.27 -8.94 6.31 -19.00 -0.12 -9.06 15 7 C 0.52 22.55 7.93 70.19 0.56 23.10 15 8 O -0.55 -26.11 14.67 19.72 0.29 -25.82 15 9 O -0.36 -16.88 9.72 -56.89 -0.55 -17.43 15 10 C 0.19 9.49 2.16 29.85 0.06 9.55 15 11 H 0.03 1.84 4.48 -2.39 -0.01 1.83 15 12 C -0.15 -6.59 9.50 71.98 0.68 -5.91 15 13 C -0.53 -30.93 9.25 25.60 0.24 -30.69 15 14 H 0.05 3.26 8.06 -2.91 -0.02 3.24 15 15 C 0.04 2.12 5.47 84.65 0.46 2.59 15 16 N -0.92 -55.81 13.96 21.45 0.30 -55.51 15 17 Si 0.93 44.47 26.71 68.60 1.83 46.30 15 18 H -0.27 -13.01 7.11 99.48 0.71 -12.31 15 19 H -0.25 -11.51 6.84 99.48 0.68 -10.83 15 20 H -0.26 -11.91 7.11 99.48 0.71 -11.20 15 21 H 0.07 1.63 8.14 -2.39 -0.02 1.61 15 22 H 0.10 1.59 8.14 -2.39 -0.02 1.57 15 23 H 0.05 1.55 6.92 -2.39 -0.02 1.53 15 24 H 0.26 1.92 8.06 -2.91 -0.02 1.90 15 25 H 0.24 5.17 8.06 -2.91 -0.02 5.15 15 26 H 0.06 2.74 8.14 -2.39 -0.02 2.72 15 27 H 0.07 2.93 7.87 -2.38 -0.02 2.91 15 28 H 0.04 1.84 8.14 -2.39 -0.02 1.82 15 29 H 0.28 15.45 8.31 -92.70 -0.77 14.68 15 Total: -1.00 -71.65 261.85 7.13 -64.52 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: 1.13 Total: 4.62 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 4.08 Total: -13.11 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.30 Total: -55.51 kcal Atomic # 8 Polarization: -46.60 SS G_CDS: -0.21 Total: -46.82 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.83 Total: 46.30 kcal Total: -71.65 7.13 -64.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860544400.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.466 kcal (2) G-P(sol) polarization free energy of solvation -71.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds