Wall clock time and date at job start Sun Mar 29 2020 22:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38205 * 119.94734 * 2 1 4 4 N 1.32265 * 120.20260 * 179.97438 * 3 2 1 5 5 C 1.31926 * 120.09540 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.05751 * 179.97438 * 5 4 3 7 7 C 1.39356 * 119.88641 * 359.97438 * 5 4 3 8 8 S 1.76197 * 120.09860 * 180.02562 * 7 5 4 9 9 C 1.81399 * 103.00045 * 180.02562 * 8 7 5 10 10 C 1.50699 * 109.47054 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99963 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00270 * 179.97438 * 10 9 8 13 13 N 1.31522 * 119.99835 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00496 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47092 * 90.00048 * 14 12 10 16 16 H 1.48498 * 109.47340 * 210.00299 * 14 12 10 17 17 H 1.48501 * 109.47391 * 330.00372 * 14 12 10 18 18 N 1.32214 * 119.94459 * 180.29839 * 2 1 3 19 19 H 1.09005 * 109.46999 * 89.99856 * 1 2 3 20 20 H 1.08996 * 109.47580 * 209.99755 * 1 2 3 21 21 H 1.09001 * 109.47007 * 330.00284 * 1 2 3 22 22 H 1.08006 * 119.89955 * 359.97438 * 3 2 1 23 23 H 1.08997 * 109.47109 * 270.02022 * 6 5 4 24 24 H 1.09002 * 109.47569 * 30.01729 * 6 5 4 25 25 H 1.09000 * 109.47278 * 150.01876 * 6 5 4 26 26 H 1.09000 * 109.47070 * 300.00113 * 9 8 7 27 27 H 1.09001 * 109.46593 * 60.00110 * 9 8 7 28 28 H 0.96992 * 120.00038 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1975 0.0000 4 7 3.5196 1.2034 0.0005 5 6 4.1862 0.0650 0.0005 6 6 5.6931 0.0727 0.0005 7 6 3.4944 -1.1448 0.0005 8 16 4.3791 -2.6685 0.0012 9 6 3.0554 -3.9089 0.0002 10 6 3.6604 -5.2891 0.0013 11 1 4.7338 -5.4082 0.0021 12 6 2.8436 -6.3999 0.0013 13 7 1.5364 -6.2549 -0.0002 14 14 3.5934 -8.1107 0.0019 15 1 3.7916 -8.5638 1.4022 16 1 2.6818 -9.0510 -0.6982 17 1 4.9029 -8.0776 -0.6976 18 7 2.1670 -1.1456 -0.0060 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3634 -0.8899 0.5138 21 1 -0.3633 0.8900 0.5138 22 1 1.6544 2.1314 -0.0004 23 1 6.0564 0.0749 -1.0271 24 1 6.0520 0.9643 0.5146 25 1 6.0610 -0.8156 0.5140 26 1 2.4382 -3.7824 0.8897 27 1 2.4397 -3.7823 -0.8903 28 1 0.9617 -7.0362 0.0002 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882448326.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:44 Heat of formation + Delta-G solvation = 2.694773 kcal Electronic energy + Delta-G solvation = -12625.589041 eV Core-core repulsion = 10380.253511 eV Total energy + Delta-G solvation = -2245.335530 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.99699 -35.94751 -35.30885 -34.23188 -31.30050 -30.60670 -26.84155 -25.92892 -25.23018 -23.03631 -18.99282 -18.95251 -18.01056 -16.96038 -16.62583 -16.45277 -15.32955 -14.53282 -14.52502 -14.38838 -14.28846 -13.75613 -13.48758 -13.23204 -13.17890 -12.78236 -12.69833 -12.55711 -12.32575 -12.27418 -11.64213 -11.11094 -10.79616 -10.40911 -10.09030 -8.53984 -8.34822 -6.51588 -0.31541 0.07261 0.61231 1.40096 1.41998 1.52394 1.61951 2.35350 2.55476 2.99504 3.18760 3.29893 3.43977 3.96866 4.17877 4.25563 4.69171 4.71294 4.75760 4.80659 4.89760 4.97550 5.00305 5.16218 5.42190 5.52739 5.80081 6.24120 6.57174 6.73169 7.17666 8.77388 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.037799 B = 0.007363 C = 0.006197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.590513 B = 3802.074014 C = 4516.914664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.073 3.927 3 C 0.042 3.958 4 N -0.433 5.433 5 C 0.076 3.924 6 C -0.094 4.094 7 C 0.051 3.949 8 S -0.072 6.072 9 C 0.083 3.917 10 C -0.546 4.546 11 H 0.072 0.928 12 C 0.016 3.984 13 N -0.923 5.923 14 Si 0.981 3.019 15 H -0.268 1.268 16 H -0.277 1.277 17 H -0.260 1.260 18 N -0.482 5.482 19 H 0.092 0.908 20 H 0.059 0.941 21 H 0.119 0.881 22 H 0.213 0.787 23 H 0.095 0.905 24 H 0.098 0.902 25 H 0.080 0.920 26 H 0.013 0.987 27 H 0.013 0.987 28 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.788 13.139 -0.029 13.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.072 4.072 3 C -0.122 4.122 4 N -0.148 5.148 5 C -0.071 4.071 6 C -0.152 4.152 7 C -0.199 4.199 8 S 0.171 5.829 9 C -0.065 4.065 10 C -0.585 4.585 11 H 0.090 0.910 12 C -0.186 4.186 13 N -0.561 5.561 14 Si 0.804 3.196 15 H -0.193 1.193 16 H -0.202 1.202 17 H -0.184 1.184 18 N -0.202 5.202 19 H 0.111 0.889 20 H 0.078 0.922 21 H 0.137 0.863 22 H 0.230 0.770 23 H 0.113 0.887 24 H 0.117 0.883 25 H 0.099 0.901 26 H 0.031 0.969 27 H 0.032 0.968 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.838 12.722 -0.038 13.035 hybrid contribution -1.575 -0.862 -0.003 1.796 sum 1.263 11.860 -0.042 11.927 Atomic orbital electron populations 1.20789 0.85343 1.04731 1.04390 1.23019 1.00162 0.89132 0.94841 1.24088 0.90179 0.99947 0.98028 1.68311 1.09492 1.27783 1.09214 1.22272 0.99533 0.86907 0.98434 1.20723 0.85404 1.04480 1.04547 1.24514 0.94140 0.99842 1.01398 1.84901 1.15338 0.93592 1.89053 1.20821 0.93223 0.93946 0.98464 1.21031 0.93946 0.89595 1.53893 0.91015 1.25991 0.95091 1.04045 0.93458 1.70110 1.04473 1.32160 1.49396 0.85208 0.78563 0.76987 0.78878 1.19285 1.20175 1.18382 1.68794 1.07425 1.31462 1.12500 0.88922 0.92153 0.86283 0.77015 0.88659 0.88289 0.90101 0.96875 0.96819 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.19 10.19 71.24 0.73 -1.46 15 2 C 0.07 2.33 6.78 42.49 0.29 2.62 15 3 C 0.04 1.11 10.86 84.62 0.92 2.03 15 4 N -0.43 -13.38 10.41 -182.72 -1.90 -15.28 15 5 C 0.08 2.59 6.81 42.81 0.29 2.89 15 6 C -0.09 -2.48 9.76 71.23 0.70 -1.78 15 7 C 0.05 2.12 7.00 84.82 0.59 2.71 15 8 S -0.07 -3.20 20.07 -56.49 -1.13 -4.34 15 9 C 0.08 4.66 4.98 71.24 0.35 5.02 15 10 C -0.55 -31.35 9.13 25.60 0.23 -31.11 15 11 H 0.07 3.95 7.71 -2.91 -0.02 3.93 15 12 C 0.02 0.88 5.46 84.65 0.46 1.34 15 13 N -0.92 -55.52 13.29 21.45 0.28 -55.23 15 14 Si 0.98 43.43 29.54 68.60 2.03 45.46 15 15 H -0.27 -11.40 7.11 99.48 0.71 -10.69 15 16 H -0.28 -11.85 7.11 99.48 0.71 -11.14 15 17 H -0.26 -10.99 7.11 99.48 0.71 -10.28 15 18 N -0.48 -20.37 9.53 -179.71 -1.71 -22.09 15 19 H 0.09 1.90 8.14 -2.38 -0.02 1.88 15 20 H 0.06 1.66 8.14 -2.39 -0.02 1.64 15 21 H 0.12 1.69 8.08 -2.39 -0.02 1.67 15 22 H 0.21 3.39 8.06 -2.91 -0.02 3.36 15 23 H 0.10 2.25 8.14 -2.39 -0.02 2.23 15 24 H 0.10 2.16 8.14 -2.39 -0.02 2.14 15 25 H 0.08 2.21 6.80 -2.39 -0.02 2.19 15 26 H 0.01 0.79 8.14 -2.39 -0.02 0.77 15 27 H 0.01 0.82 8.14 -2.39 -0.02 0.80 15 28 H 0.27 15.10 8.31 -92.71 -0.77 14.33 15 Total: -1.00 -69.67 262.94 3.28 -66.40 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: 1.15 Total: 2.83 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 4.56 Total: -17.75 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -3.33 Total: -92.60 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -3.20 SS G_CDS: -1.13 Total: -4.34 kcal Total: -69.67 3.28 -66.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882448326.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.090 kcal (2) G-P(sol) polarization free energy of solvation -69.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds