Wall clock time and date at job start Sun Mar 29 2020 22:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35162 * 126.43691 * 2 1 4 4 O 1.33919 * 108.78569 * 180.02562 * 3 2 1 5 5 C 1.34933 * 109.37588 * 359.97438 * 4 3 2 6 6 C 1.46476 * 125.99598 * 179.97438 * 5 4 3 7 7 O 1.21623 * 120.00185 * 180.02562 * 6 5 4 8 8 O 1.34893 * 119.99772 * 359.75341 * 6 5 4 9 9 C 1.45196 * 117.00151 * 180.26940 * 8 6 5 10 10 C 1.53001 * 109.47485 * 180.02562 * 9 8 6 11 11 C 1.50698 * 109.47181 * 180.02562 * 10 9 8 12 12 H 1.07993 * 120.00065 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00005 * 180.02562 * 11 10 9 14 14 N 1.31507 * 120.00385 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99694 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.46964 * 90.00237 * 15 13 11 17 17 H 1.48502 * 109.46957 * 209.99724 * 15 13 11 18 18 H 1.48501 * 109.47519 * 330.00022 * 15 13 11 19 19 C 1.36645 * 108.01209 * 0.23445 * 5 4 3 20 20 H 1.09006 * 109.47048 * 89.97874 * 1 2 3 21 21 H 1.09003 * 109.47133 * 209.97251 * 1 2 3 22 22 H 1.08995 * 109.47407 * 329.97328 * 1 2 3 23 23 H 1.08007 * 125.61091 * 359.97438 * 3 2 1 24 24 H 1.08998 * 109.47461 * 300.00565 * 9 8 6 25 25 H 1.09004 * 109.46605 * 60.00764 * 9 8 6 26 26 H 1.08998 * 109.47123 * 300.00638 * 10 9 8 27 27 H 1.09002 * 109.47078 * 60.00025 * 10 9 8 28 28 H 0.96997 * 120.00743 * 180.02562 * 14 13 11 29 29 H 1.07993 * 126.65166 * 179.77565 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0874 0.0000 4 8 3.5859 0.6813 -0.0006 5 6 3.6265 -0.6674 -0.0004 6 6 4.8369 -1.4922 -0.0014 7 8 4.7464 -2.7051 -0.0015 8 8 6.0521 -0.9066 -0.0076 9 6 7.2076 -1.7858 -0.0143 10 6 8.4870 -0.9468 -0.0202 11 6 9.6862 -1.8594 -0.0278 12 1 9.5495 -2.9306 -0.0288 13 6 10.9579 -1.3266 -0.0334 14 7 12.0045 -2.1230 -0.0405 15 14 11.1943 0.5264 -0.0324 16 1 11.2638 1.0157 1.3680 17 1 12.4562 0.8648 -0.7382 18 1 10.0507 1.1717 -0.7260 19 6 2.3403 -1.1288 -0.0050 20 1 -0.3633 0.0004 -1.0277 21 1 -0.3633 -0.8902 0.5134 22 1 -0.3634 0.8897 0.5142 23 1 1.9768 2.1149 -0.0004 24 1 7.1904 -2.4153 0.8753 25 1 7.1807 -2.4142 -0.9046 26 1 8.5044 -0.3170 -0.9096 27 1 8.5136 -0.3186 0.8702 28 1 12.8991 -1.7482 -0.0441 29 1 2.0261 -2.1620 -0.0095 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884709906.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:19 Heat of formation + Delta-G solvation = -102.228634 kcal Electronic energy + Delta-G solvation = -14436.070408 eV Core-core repulsion = 11711.139435 eV Total energy + Delta-G solvation = -2724.930972 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.80618 -41.32041 -37.90528 -35.46305 -35.20859 -32.92780 -31.73993 -28.42917 -27.31901 -25.00430 -22.66935 -22.27086 -21.34138 -19.26752 -18.82777 -18.02381 -17.98253 -17.06830 -16.97221 -16.31495 -15.16917 -15.06136 -14.52549 -14.44810 -14.16429 -13.93674 -13.57258 -13.40712 -13.22786 -12.62675 -12.57110 -12.54961 -11.91007 -11.83642 -11.58162 -11.52447 -10.83660 -10.81915 -9.70722 -8.36069 -6.44426 -0.27625 1.20936 1.25733 1.36843 1.38438 1.51393 1.72800 2.02158 2.32867 2.98377 3.56845 3.72737 3.95449 4.10412 4.11709 4.23264 4.54223 4.58052 4.80087 4.91748 4.93927 5.01489 5.08523 5.23651 5.31580 5.46650 5.49491 5.79618 6.13412 6.48254 6.61185 7.20497 8.79713 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.058404 B = 0.005065 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.307150 B = 5526.774738 C = 5980.317904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.206 4.206 3 C 0.020 3.980 4 O -0.167 6.167 5 C -0.098 4.098 6 C 0.543 3.457 7 O -0.519 6.519 8 O -0.355 6.355 9 C 0.092 3.908 10 C -0.004 4.004 11 C -0.543 4.543 12 H 0.038 0.962 13 C 0.013 3.987 14 N -0.942 5.942 15 Si 0.953 3.047 16 H -0.263 1.263 17 H -0.278 1.278 18 H -0.247 1.247 19 C -0.097 4.097 20 H 0.080 0.920 21 H 0.072 0.928 22 H 0.090 0.910 23 H 0.259 0.741 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.271 0.729 29 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.067 9.942 0.089 26.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.207 4.207 3 C -0.049 4.049 4 O -0.062 6.062 5 C -0.148 4.148 6 C 0.390 3.610 7 O -0.411 6.411 8 O -0.272 6.272 9 C 0.019 3.981 10 C -0.041 4.041 11 C -0.580 4.580 12 H 0.057 0.943 13 C -0.185 4.185 14 N -0.581 5.581 15 Si 0.775 3.225 16 H -0.188 1.188 17 H -0.204 1.204 18 H -0.171 1.171 19 C -0.117 4.117 20 H 0.098 0.902 21 H 0.091 0.909 22 H 0.109 0.891 23 H 0.275 0.725 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -23.575 9.736 0.084 25.506 hybrid contribution 0.786 -0.164 0.009 0.803 sum -22.789 9.572 0.092 24.718 Atomic orbital electron populations 1.20285 0.85646 1.04253 1.03460 1.20898 0.99539 0.91025 1.09228 1.25405 0.78375 1.02257 0.98906 1.84174 1.31177 1.20600 1.70218 1.20562 0.92898 0.81566 1.19740 1.19666 0.82918 0.85667 0.72754 1.90896 1.87540 1.14508 1.48194 1.86628 1.15053 1.42339 1.83157 1.23118 0.81194 0.92008 1.01808 1.19477 0.90010 0.96146 0.98496 1.21075 0.90706 0.93685 1.52572 0.94326 1.25930 0.95138 1.04058 0.93416 1.70027 0.99094 1.37776 1.51191 0.85617 0.78504 0.78789 0.79545 1.18761 1.20363 1.17067 1.22197 0.89409 1.02181 0.97903 0.90176 0.90916 0.89110 0.72504 0.91711 0.91729 0.94709 0.94786 0.91984 0.81259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.39 71.23 0.74 0.05 15 2 C -0.21 -3.36 6.14 -20.07 -0.12 -3.48 15 3 C 0.02 0.31 12.00 67.11 0.81 1.12 15 4 O -0.17 -4.36 10.67 -4.90 -0.05 -4.42 15 5 C -0.10 -2.94 7.18 24.05 0.17 -2.77 15 6 C 0.54 20.37 7.93 69.97 0.55 20.93 15 7 O -0.52 -21.32 16.66 19.43 0.32 -21.00 15 8 O -0.36 -14.58 10.23 -56.70 -0.58 -15.16 15 9 C 0.09 4.10 5.42 71.98 0.39 4.49 15 10 C 0.00 -0.19 4.42 29.85 0.13 -0.06 15 11 C -0.54 -31.85 9.66 25.60 0.25 -31.60 15 12 H 0.04 2.48 7.99 -2.91 -0.02 2.45 15 13 C 0.01 0.76 5.47 84.66 0.46 1.22 15 14 N -0.94 -58.82 13.96 21.45 0.30 -58.52 15 15 Si 0.95 44.08 27.47 68.60 1.88 45.96 15 16 H -0.26 -11.61 7.11 99.48 0.71 -10.91 15 17 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 18 H -0.25 -10.73 6.54 99.48 0.65 -10.08 15 19 C -0.10 -2.26 10.57 22.40 0.24 -2.03 15 20 H 0.08 0.57 8.14 -2.38 -0.02 0.55 15 21 H 0.07 0.61 8.14 -2.39 -0.02 0.59 15 22 H 0.09 0.41 8.14 -2.39 -0.02 0.39 15 23 H 0.26 1.20 8.06 -2.91 -0.02 1.17 15 24 H 0.06 2.90 8.14 -2.39 -0.02 2.88 15 25 H 0.06 2.90 8.14 -2.38 -0.02 2.88 15 26 H 0.03 1.67 7.20 -2.39 -0.02 1.65 15 27 H 0.03 1.61 7.57 -2.39 -0.02 1.59 15 28 H 0.27 15.66 8.31 -92.71 -0.77 14.89 15 29 H 0.17 3.57 8.06 -2.91 -0.02 3.55 15 Total: -1.00 -72.01 266.81 6.59 -65.42 By element: Atomic # 1 Polarization: -1.25 SS G_CDS: 1.09 Total: -0.16 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: 3.62 Total: -12.14 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: 0.30 Total: -58.52 kcal Atomic # 8 Polarization: -40.26 SS G_CDS: -0.31 Total: -40.57 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.96 kcal Total: -72.01 6.59 -65.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884709906.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.804 kcal (2) G-P(sol) polarization free energy of solvation -72.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds