Wall clock time and date at job start Sun Mar 29 2020 21:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 C 1.50703 * 109.46970 * 294.99898 * 4 2 1 6 6 H 1.08002 * 119.99817 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00164 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00141 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99889 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47364 * 89.99969 * 9 7 5 11 11 H 1.48507 * 109.46859 * 210.00165 * 9 7 5 12 12 H 1.48503 * 109.47014 * 329.99390 * 9 7 5 13 13 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 14 14 N 1.46905 * 109.47150 * 64.99960 * 13 2 1 15 15 C 1.46900 * 111.00154 * 180.02562 * 14 13 2 16 16 C 1.52998 * 109.47093 * 180.02562 * 15 14 13 17 17 H 1.08999 * 110.34320 * 55.83601 * 16 15 14 18 18 C 1.51092 * 110.38690 * 293.54546 * 16 15 14 19 19 C 1.30524 * 111.10652 * 224.75107 * 18 16 15 20 20 C 1.51107 * 111.10278 * 0.02562 * 19 18 16 21 21 C 1.54635 * 104.72451 * 16.43426 * 20 19 18 22 22 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 23 23 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09000 * 109.47059 * 54.99596 * 4 2 1 26 26 H 1.08996 * 109.47073 * 174.99688 * 4 2 1 27 27 H 0.97001 * 120.00015 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.47630 * 185.00216 * 13 2 1 29 29 H 1.09004 * 109.47346 * 305.00346 * 13 2 1 30 30 H 1.00895 * 111.00168 * 303.95574 * 14 13 2 31 31 H 1.09004 * 109.47150 * 300.00195 * 15 14 13 32 32 H 1.08999 * 109.47196 * 60.00064 * 15 14 13 33 33 H 1.08005 * 124.45333 * 44.77306 * 18 16 15 34 34 H 1.07999 * 124.45345 * 180.02562 * 19 18 16 35 35 H 1.08997 * 110.38577 * 135.25045 * 20 19 18 36 36 H 1.09003 * 110.38059 * 257.50680 * 20 19 18 37 37 H 1.08997 * 111.03584 * 217.33358 * 21 20 19 38 38 H 1.08997 * 111.03180 * 93.39867 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 1 1.0807 0.9746 2.3756 7 6 1.9924 -0.4022 3.7283 8 7 1.6449 0.2773 4.7993 9 14 2.9615 -1.9896 3.9029 10 1 4.4151 -1.6873 3.8788 11 1 2.6130 -2.6432 5.1900 12 1 2.6264 -2.9003 2.7787 13 6 2.0400 -0.7213 -1.2492 14 7 1.6513 0.0374 -2.4457 15 6 2.1247 -0.6272 -3.6672 16 6 1.7023 0.1909 -4.8892 17 1 2.0685 1.2141 -4.8052 18 6 0.1986 0.1802 -5.0356 19 6 -0.1515 -0.0301 -6.2753 20 6 1.0606 -0.1954 -7.1624 21 6 2.2281 -0.4681 -6.1858 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.6054 -1.7198 1.2951 26 1 3.1263 -0.7995 1.2055 27 1 1.8915 -0.0461 5.6800 28 1 3.1263 -0.7996 -1.2056 29 1 1.6053 -1.7198 -1.2952 30 1 0.6528 0.1793 -2.4753 31 1 3.2116 -0.7052 -3.6406 32 1 1.6902 -1.6249 -3.7297 33 1 -0.4957 0.3277 -4.2215 34 1 -1.1733 -0.0794 -6.6217 35 1 0.9247 -1.0404 -7.8373 36 1 1.2431 0.7173 -7.7297 37 1 3.1440 0.0147 -6.5263 38 1 2.3802 -1.5385 -6.0472 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895527701.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:51 Heat of formation + Delta-G solvation = -7.136472 kcal Electronic energy + Delta-G solvation = -14996.192869 eV Core-core repulsion = 12644.770253 eV Total energy + Delta-G solvation = -2351.422616 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.12332 -36.76695 -33.91777 -32.02253 -29.61381 -28.90238 -27.32396 -25.38477 -23.31899 -21.74492 -20.67250 -18.99685 -18.62585 -16.85765 -16.24241 -15.99402 -14.83510 -14.59118 -13.98034 -13.63083 -13.34784 -12.81610 -12.54892 -12.15839 -12.04348 -11.97552 -11.82803 -11.66549 -11.39023 -11.10724 -10.99835 -10.81328 -10.63614 -10.35278 -9.87872 -9.63767 -9.41131 -9.05958 -9.00821 -8.49229 -8.16010 -5.99637 -3.96427 2.13489 3.33367 3.40560 3.44379 4.30280 4.48251 4.49106 4.58148 4.88938 5.10892 5.26981 5.33998 5.36857 5.43444 5.53646 5.65826 5.71001 5.73388 5.78979 5.86821 5.95606 6.01228 6.16559 6.19573 6.37915 6.41633 6.49017 6.74691 6.81038 7.00104 7.08382 7.29728 7.33815 7.52749 7.65916 7.85518 8.60120 9.06150 9.63400 11.13851 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.062004 B = 0.004507 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.476371 B = 6211.654190 C = 6476.726415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.076 4.076 3 H 0.071 0.929 4 C -0.009 4.009 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.061 3.939 14 N -0.690 5.690 15 C 0.067 3.933 16 C -0.068 4.068 17 H 0.091 0.909 18 C -0.154 4.154 19 C -0.178 4.178 20 C -0.099 4.099 21 C -0.121 4.121 22 H 0.033 0.967 23 H 0.040 0.960 24 H 0.068 0.932 25 H 0.013 0.987 26 H 0.011 0.989 27 H 0.262 0.738 28 H 0.066 0.934 29 H 0.022 0.978 30 H 0.338 0.662 31 H 0.070 0.930 32 H 0.026 0.974 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.864 -2.598 -21.647 21.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.095 4.095 3 H 0.090 0.910 4 C -0.047 4.047 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.067 4.067 14 N -0.322 5.322 15 C -0.063 4.063 16 C -0.086 4.086 17 H 0.109 0.891 18 C -0.172 4.172 19 C -0.196 4.196 20 C -0.136 4.136 21 C -0.159 4.159 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.087 0.913 25 H 0.032 0.968 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.158 0.842 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.304 -2.183 -21.413 21.527 hybrid contribution -0.189 -1.583 0.280 1.619 sum -0.492 -3.766 -21.134 21.472 Atomic orbital electron populations 1.21746 0.96283 1.00467 1.00777 1.21031 0.95206 1.00195 0.93052 0.91043 1.19605 0.95593 0.96027 0.93439 1.21143 1.35316 1.09468 0.89106 0.90822 1.25029 0.95715 0.96913 0.95960 1.69917 1.47312 1.39286 0.97996 0.86802 0.80672 0.84524 0.77400 1.20356 1.21508 1.19139 1.22162 1.00240 0.94453 0.89890 1.60577 1.19787 1.50427 1.01396 1.21945 1.00251 0.94795 0.89276 1.21104 0.92806 1.00568 0.94171 0.89107 1.23341 0.96766 0.99662 0.97389 1.23247 0.98641 1.02148 0.95518 1.21342 0.93114 1.01453 0.97728 1.22510 0.97858 1.00970 0.94540 0.94772 0.94110 0.91319 0.96826 0.97121 0.92850 0.91560 0.95953 0.84244 0.91128 0.95587 0.85986 0.86143 0.91497 0.90892 0.90886 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 8.77 37.16 0.33 -2.20 16 2 C -0.08 -1.53 2.55 -90.62 -0.23 -1.76 16 3 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 4 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 5 C -0.51 -14.63 8.96 -34.44 -0.31 -14.94 16 6 H 0.07 2.25 7.30 -52.49 -0.38 1.87 16 7 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 8 N -0.91 -28.21 13.96 55.43 0.77 -27.44 16 9 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 13 C 0.06 1.03 5.14 -3.82 -0.02 1.02 16 14 N -0.69 -10.05 6.50 -113.77 -0.74 -10.79 16 15 C 0.07 0.82 5.08 -3.83 -0.02 0.80 16 16 C -0.07 -0.72 3.16 -90.71 -0.29 -1.01 16 17 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 18 C -0.15 -1.61 9.60 -35.70 -0.34 -1.95 16 19 C -0.18 -1.66 10.78 -35.69 -0.38 -2.04 16 20 C -0.10 -0.82 6.81 -26.82 -0.18 -1.00 16 21 C -0.12 -1.06 6.71 -25.00 -0.17 -1.23 16 22 H 0.03 0.54 6.68 -51.93 -0.35 0.19 16 23 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 1.44 6.95 -51.93 -0.36 1.08 16 25 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 26 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 27 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.34 4.70 5.68 -39.29 -0.22 4.48 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.12 1.26 7.27 -52.48 -0.38 0.88 16 34 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.62 7.91 -51.93 -0.41 0.21 16 LS Contribution 299.58 15.07 4.51 4.51 Total: -1.00 -30.14 299.58 -8.62 -38.76 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.69 Total: 0.42 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -1.81 Total: -22.83 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.03 Total: -38.22 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.14 -8.62 -38.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895527701.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.623 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds