Wall clock time and date at job start Sun Mar 29 2020 21:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 C 1.50703 * 109.46970 * 294.99898 * 4 2 1 6 6 H 1.08002 * 119.99817 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00164 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00141 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99889 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47364 * 89.99969 * 9 7 5 11 11 H 1.48507 * 109.46859 * 210.00165 * 9 7 5 12 12 H 1.48503 * 109.47014 * 329.99390 * 9 7 5 13 13 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 14 14 N 1.46905 * 109.47150 * 64.99960 * 13 2 1 15 15 C 1.46900 * 111.00154 * 180.02562 * 14 13 2 16 16 C 1.52998 * 109.47093 * 180.02562 * 15 14 13 17 17 H 1.08999 * 110.34320 * 55.83601 * 16 15 14 18 18 C 1.51092 * 110.38690 * 293.54546 * 16 15 14 19 19 C 1.30524 * 111.10652 * 224.75107 * 18 16 15 20 20 C 1.51107 * 111.10278 * 0.02562 * 19 18 16 21 21 C 1.54635 * 104.72451 * 16.43426 * 20 19 18 22 22 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 23 23 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09000 * 109.47059 * 54.99596 * 4 2 1 26 26 H 1.08996 * 109.47073 * 174.99688 * 4 2 1 27 27 H 0.97001 * 120.00015 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.47630 * 185.00216 * 13 2 1 29 29 H 1.09004 * 109.47346 * 305.00346 * 13 2 1 30 30 H 1.00895 * 111.00168 * 303.95574 * 14 13 2 31 31 H 1.09004 * 109.47150 * 300.00195 * 15 14 13 32 32 H 1.08999 * 109.47196 * 60.00064 * 15 14 13 33 33 H 1.08005 * 124.45333 * 44.77306 * 18 16 15 34 34 H 1.07999 * 124.45345 * 180.02562 * 19 18 16 35 35 H 1.08997 * 110.38577 * 135.25045 * 20 19 18 36 36 H 1.09003 * 110.38059 * 257.50680 * 20 19 18 37 37 H 1.08997 * 111.03584 * 217.33358 * 21 20 19 38 38 H 1.08997 * 111.03180 * 93.39867 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 1 1.0807 0.9746 2.3756 7 6 1.9924 -0.4022 3.7283 8 7 1.6449 0.2773 4.7993 9 14 2.9615 -1.9896 3.9029 10 1 4.4151 -1.6873 3.8788 11 1 2.6130 -2.6432 5.1900 12 1 2.6264 -2.9003 2.7787 13 6 2.0400 -0.7213 -1.2492 14 7 1.6513 0.0374 -2.4457 15 6 2.1247 -0.6272 -3.6672 16 6 1.7023 0.1909 -4.8892 17 1 2.0685 1.2141 -4.8052 18 6 0.1986 0.1802 -5.0356 19 6 -0.1515 -0.0301 -6.2753 20 6 1.0606 -0.1954 -7.1624 21 6 2.2281 -0.4681 -6.1858 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.6054 -1.7198 1.2951 26 1 3.1263 -0.7995 1.2055 27 1 1.8915 -0.0461 5.6800 28 1 3.1263 -0.7996 -1.2056 29 1 1.6053 -1.7198 -1.2952 30 1 0.6528 0.1793 -2.4753 31 1 3.2116 -0.7052 -3.6406 32 1 1.6902 -1.6249 -3.7297 33 1 -0.4957 0.3277 -4.2215 34 1 -1.1733 -0.0794 -6.6217 35 1 0.9247 -1.0404 -7.8373 36 1 1.2431 0.7173 -7.7297 37 1 3.1440 0.0147 -6.5263 38 1 2.3802 -1.5385 -6.0472 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895527701.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:51 Heat of formation + Delta-G solvation = -25.258242 kcal Electronic energy + Delta-G solvation = -14996.978688 eV Core-core repulsion = 12644.770253 eV Total energy + Delta-G solvation = -2352.208435 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.93143 -38.16659 -35.48963 -33.96757 -30.69570 -29.77616 -29.02068 -26.77684 -24.61958 -23.31242 -21.46275 -20.59891 -19.40815 -18.95381 -17.22427 -16.95127 -16.44314 -15.82548 -15.51880 -14.99062 -14.78839 -14.48336 -13.81911 -13.63898 -13.49369 -12.94335 -12.84314 -12.74505 -12.66177 -12.43442 -12.13667 -12.06737 -11.97721 -11.73186 -11.65199 -11.44190 -11.14323 -11.00587 -10.73481 -9.77906 -9.31352 -8.26058 -6.28539 1.36150 1.37579 1.39777 1.49497 2.37884 3.09092 3.25439 3.74425 3.81624 4.08521 4.18182 4.22092 4.38035 4.38631 4.48703 4.61758 4.66362 4.76884 4.81846 4.84771 4.97998 5.01049 5.02400 5.04114 5.11429 5.24963 5.29797 5.36126 5.43141 5.54031 5.65335 5.70165 5.72602 6.00958 6.15512 6.34945 6.51837 6.78980 7.35039 8.90790 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.062004 B = 0.004507 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.476371 B = 6211.654190 C = 6476.726415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.072 4.072 3 H 0.052 0.948 4 C -0.006 4.006 5 C -0.519 4.519 6 H 0.034 0.966 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.949 3.051 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.247 1.247 13 C 0.074 3.926 14 N -0.695 5.695 15 C 0.069 3.931 16 C -0.065 4.065 17 H 0.080 0.920 18 C -0.178 4.178 19 C -0.170 4.170 20 C -0.100 4.100 21 C -0.118 4.118 22 H 0.063 0.937 23 H 0.048 0.952 24 H 0.035 0.965 25 H 0.018 0.982 26 H 0.015 0.985 27 H 0.265 0.735 28 H 0.066 0.934 29 H 0.029 0.971 30 H 0.342 0.658 31 H 0.071 0.929 32 H 0.028 0.972 33 H 0.118 0.882 34 H 0.133 0.867 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.265 -4.279 -23.930 24.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.091 4.091 3 H 0.071 0.929 4 C -0.044 4.044 5 C -0.558 4.558 6 H 0.052 0.948 7 C -0.195 4.195 8 N -0.595 5.595 9 Si 0.773 3.227 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.171 1.171 13 C -0.055 4.055 14 N -0.327 5.327 15 C -0.060 4.060 16 C -0.084 4.084 17 H 0.099 0.901 18 C -0.196 4.196 19 C -0.188 4.188 20 C -0.137 4.137 21 C -0.156 4.156 22 H 0.082 0.918 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.036 0.964 26 H 0.033 0.967 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.162 0.838 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.136 0.864 34 H 0.151 0.849 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.292 -3.861 -23.727 24.041 hybrid contribution -0.440 -0.958 0.952 1.420 sum -0.148 -4.818 -22.775 23.280 Atomic orbital electron populations 1.21657 0.95383 1.00931 1.00654 1.20903 0.95995 0.99040 0.93204 0.92930 1.19559 0.95833 0.95797 0.93220 1.21457 1.34431 1.08602 0.91267 0.94757 1.26010 0.97040 1.00991 0.95500 1.70075 1.49155 1.41600 0.98719 0.85675 0.79193 0.79860 0.77996 1.19289 1.21106 1.17101 1.21900 1.00099 0.94340 0.89207 1.60526 1.20192 1.50486 1.01521 1.21986 1.00243 0.94992 0.88754 1.21058 0.93138 0.99869 0.94292 0.90150 1.23376 0.96632 1.01591 0.97984 1.23522 0.99726 1.00235 0.95305 1.21398 0.92258 1.02418 0.97656 1.22524 0.98506 1.01035 0.93575 0.91775 0.93275 0.94569 0.96382 0.96672 0.92661 0.91548 0.95250 0.83822 0.91025 0.95358 0.86368 0.84918 0.90202 0.90034 0.89874 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 8.77 71.98 0.63 -4.13 16 2 C -0.07 -2.88 2.55 -10.79 -0.03 -2.90 16 3 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 4 C -0.01 -0.30 3.52 29.85 0.10 -0.19 16 5 C -0.52 -30.37 8.96 25.60 0.23 -30.14 16 6 H 0.03 2.21 7.30 -2.91 -0.02 2.19 16 7 C 0.00 0.04 5.47 84.65 0.46 0.50 16 8 N -0.95 -60.96 13.96 21.44 0.30 -60.66 16 9 Si 0.95 45.08 27.47 68.60 1.88 46.96 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 13 C 0.07 2.35 5.14 86.30 0.44 2.80 16 14 N -0.69 -19.08 6.50 -513.87 -3.34 -22.42 16 15 C 0.07 1.56 5.08 86.30 0.44 2.00 16 16 C -0.07 -1.26 3.16 -10.85 -0.03 -1.30 16 17 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 18 C -0.18 -3.41 9.60 26.26 0.25 -3.16 16 19 C -0.17 -2.78 10.78 26.27 0.28 -2.49 16 20 C -0.10 -1.38 6.81 30.53 0.21 -1.17 16 21 C -0.12 -1.79 6.71 31.71 0.21 -1.58 16 22 H 0.06 1.95 6.68 -2.39 -0.02 1.93 16 23 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.04 1.54 6.95 -2.39 -0.02 1.53 16 25 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 26 H 0.01 0.70 7.57 -2.39 -0.02 0.68 16 27 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 28 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.34 8.92 5.68 -89.70 -0.51 8.41 16 31 H 0.07 1.59 8.14 -2.38 -0.02 1.58 16 32 H 0.03 0.63 8.14 -2.39 -0.02 0.62 16 33 H 0.12 2.30 7.27 -2.91 -0.02 2.27 16 34 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.08 7.91 -2.39 -0.02 1.06 16 Total: -1.00 -65.29 299.58 2.49 -62.80 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.44 Total: 15.09 kcal Atomic # 6 Polarization: -44.97 SS G_CDS: 3.21 Total: -41.77 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -3.04 Total: -83.08 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.96 kcal Total: -65.29 2.49 -62.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895527701.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.542 kcal (2) G-P(sol) polarization free energy of solvation -65.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds