Wall clock time and date at job start Sun Mar 29 2020 21:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47097 * 2 1 4 4 C 1.52999 * 109.47342 * 120.00327 * 2 1 3 5 5 C 1.50704 * 109.46704 * 295.00079 * 4 2 1 6 6 H 1.07994 * 120.00449 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99584 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00218 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99853 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47094 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47224 * 119.99948 * 9 7 5 12 12 H 1.48497 * 109.47478 * 240.00199 * 9 7 5 13 13 C 1.52996 * 109.46902 * 240.00134 * 2 1 3 14 14 N 1.46901 * 109.47518 * 65.00068 * 13 2 1 15 15 C 1.46894 * 111.00427 * 179.97438 * 14 13 2 16 16 C 1.52997 * 119.30009 * 250.94940 * 15 14 13 17 17 C 1.52994 * 60.37997 * 247.75577 * 16 15 14 18 18 H 1.09005 * 119.75474 * 111.12038 * 17 16 15 19 19 C 1.54264 * 118.20169 * 266.38149 * 17 16 15 20 20 C 1.54897 * 104.19493 * 87.78956 * 19 17 16 21 21 C 1.54268 * 117.41144 * 45.29191 * 15 14 13 22 22 H 1.09002 * 109.46923 * 60.00151 * 1 2 3 23 23 H 1.08997 * 109.47097 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47121 * 299.99667 * 1 2 3 25 25 H 1.09005 * 109.47109 * 54.99880 * 4 2 1 26 26 H 1.08999 * 109.47408 * 175.00150 * 4 2 1 27 27 H 0.97004 * 120.00018 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.47387 * 304.99654 * 13 2 1 29 29 H 1.09001 * 109.47285 * 185.00165 * 13 2 1 30 30 H 1.00904 * 110.99815 * 56.04233 * 14 13 2 31 31 H 1.08994 * 117.46490 * 355.35869 * 16 15 14 32 32 H 1.09012 * 117.46044 * 140.18378 * 16 15 14 33 33 H 1.08998 * 110.49036 * 329.11413 * 19 17 16 34 34 H 1.09000 * 110.49063 * 206.46453 * 19 17 16 35 35 H 1.09000 * 110.75568 * 80.37108 * 20 19 17 36 36 H 1.09002 * 110.75327 * 203.73969 * 20 19 17 37 37 H 1.08998 * 110.48695 * 358.90214 * 21 15 14 38 38 H 1.08999 * 110.48827 * 236.25772 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6413 0.0570 2.4765 6 1 1.0807 0.9745 2.3757 7 6 1.9924 -0.4024 3.7283 8 7 2.6756 -1.5194 3.8511 9 14 1.4988 0.5627 5.2496 10 1 0.7423 1.7743 4.8434 11 1 0.6441 -0.2859 6.1183 12 1 2.7171 0.9665 5.9965 13 6 2.0399 -0.7212 -1.2492 14 7 1.6513 0.0374 -2.4457 15 6 2.1257 -0.6264 -3.6672 16 6 3.2674 0.0041 -4.4669 17 6 1.8615 -0.0472 -5.0680 18 1 1.2967 0.8754 -5.2026 19 6 1.5004 -1.2399 -5.9773 20 6 0.9810 -2.3211 -4.9972 21 6 1.9160 -2.1511 -3.7741 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6054 -1.7199 1.2951 26 1 3.1264 -0.7995 1.2055 27 1 2.9223 -1.8428 4.7317 28 1 1.6053 -1.7198 -1.2952 29 1 3.1263 -0.7995 -1.2056 30 1 1.9881 0.9874 -2.3967 31 1 3.6374 0.9743 -4.1355 32 1 4.0177 -0.6665 -4.8861 33 1 2.3837 -1.5974 -6.5064 34 1 0.7193 -0.9585 -6.6836 35 1 -0.0554 -2.1265 -4.7212 36 1 1.0866 -3.3164 -5.4288 37 1 1.4382 -2.5346 -2.8725 38 1 2.8664 -2.6557 -3.9474 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897375453.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:19 Heat of formation + Delta-G solvation = 0.444173 kcal Electronic energy + Delta-G solvation = -15355.465603 eV Core-core repulsion = 13004.371709 eV Total energy + Delta-G solvation = -2351.093894 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.73432 -36.13114 -33.21796 -31.94376 -30.81471 -27.66526 -26.70110 -25.05609 -22.65502 -22.53282 -20.32353 -19.08074 -18.77002 -16.29121 -16.24247 -15.19022 -14.48183 -14.44370 -13.99936 -13.47123 -13.22510 -13.01893 -12.60576 -12.15432 -11.87006 -11.50048 -11.40541 -11.12106 -10.98193 -10.87111 -10.83439 -10.78597 -10.47062 -10.28379 -10.18061 -9.77143 -9.61318 -9.11829 -8.90486 -8.31659 -7.83661 -5.96264 -3.97243 3.33079 3.40638 3.44845 3.65260 4.28114 4.48494 4.50971 4.69637 4.79661 5.20315 5.33605 5.39700 5.41871 5.54123 5.69500 5.72638 5.73993 5.79283 5.82097 5.95768 6.01143 6.06961 6.19953 6.22962 6.33526 6.46867 6.58172 6.70801 7.04384 7.20002 7.22501 7.41974 7.66667 7.72150 7.87297 8.04164 8.48282 9.09372 9.66158 11.15334 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.059187 B = 0.004925 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.965326 B = 5684.042467 C = 5736.425958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.083 4.083 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.065 3.935 14 N -0.644 5.644 15 C 0.049 3.951 16 C -0.190 4.190 17 C -0.162 4.162 18 H 0.107 0.893 19 C -0.093 4.093 20 C -0.119 4.119 21 C -0.089 4.089 22 H 0.041 0.959 23 H 0.039 0.961 24 H 0.053 0.947 25 H 0.016 0.984 26 H 0.013 0.987 27 H 0.259 0.741 28 H 0.070 0.930 29 H 0.026 0.974 30 H 0.339 0.661 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.165 0.409 -17.263 17.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.102 4.102 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.063 4.063 14 N -0.271 5.271 15 C -0.044 4.044 16 C -0.230 4.230 17 C -0.181 4.181 18 H 0.125 0.875 19 C -0.130 4.130 20 C -0.157 4.157 21 C -0.127 4.127 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.035 0.965 26 H 0.031 0.969 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.157 0.843 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.751 0.010 -17.119 17.208 hybrid contribution 0.823 0.797 0.980 1.508 sum -0.928 0.807 -16.139 16.186 Atomic orbital electron populations 1.21590 0.95722 1.00583 1.00131 1.21221 0.96009 0.98925 0.94083 0.92897 1.19124 0.95930 0.95582 0.90397 1.21280 1.34478 1.08253 0.90979 0.92518 1.25021 0.95347 0.95100 0.99095 1.69980 1.39205 1.21274 1.23239 0.86578 0.78235 0.80150 0.83300 1.19750 1.21082 1.21122 1.22185 0.97382 0.97923 0.88800 1.60264 1.61557 1.05136 1.00179 1.22529 0.99302 0.93594 0.88953 1.23697 0.91799 1.02499 1.05015 1.23397 0.98801 1.00030 0.95920 0.87498 1.21915 1.00382 0.93907 0.96829 1.22627 0.99815 0.98203 0.95035 1.21968 0.99570 0.91884 0.99234 0.93989 0.94147 0.92758 0.96531 0.96904 0.93172 0.91154 0.95577 0.84279 0.88790 0.89338 0.91743 0.91480 0.91008 0.91559 0.90110 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.89 37.16 0.33 -2.10 16 2 C -0.08 -1.73 2.48 -90.62 -0.22 -1.96 16 3 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.46 8.41 -34.44 -0.29 -14.75 16 6 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 9 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.06 1.15 4.70 -3.83 -0.02 1.13 16 14 N -0.64 -9.82 6.30 -98.84 -0.62 -10.44 16 15 C 0.05 0.65 2.99 -130.49 -0.39 0.26 16 16 C -0.19 -2.23 9.86 -26.74 -0.26 -2.49 16 17 C -0.16 -1.87 6.94 -89.51 -0.62 -2.49 16 18 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 19 C -0.09 -0.92 6.63 -25.07 -0.17 -1.09 16 20 C -0.12 -1.25 6.91 -24.73 -0.17 -1.42 16 21 C -0.09 -1.11 6.08 -25.07 -0.15 -1.26 16 22 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.07 1.27 6.22 -51.93 -0.32 0.94 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.34 4.95 8.64 -39.29 -0.34 4.61 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 1.11 6.14 -51.93 -0.32 0.79 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 301.15 15.07 4.54 4.54 Total: -1.00 -29.50 301.15 -9.30 -38.80 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.75 Total: 0.80 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: -2.19 Total: -24.09 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.11 Total: -36.87 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.50 -9.30 -38.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897375453.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.244 kcal (2) G-P(sol) polarization free energy of solvation -29.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds