Wall clock time and date at job start Sun Mar 29 2020 21:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47097 * 2 1 4 4 C 1.52999 * 109.47342 * 120.00327 * 2 1 3 5 5 C 1.50704 * 109.46704 * 295.00079 * 4 2 1 6 6 H 1.07994 * 120.00449 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99584 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00218 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99853 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47094 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47224 * 119.99948 * 9 7 5 12 12 H 1.48497 * 109.47478 * 240.00199 * 9 7 5 13 13 C 1.52996 * 109.46902 * 240.00134 * 2 1 3 14 14 N 1.46901 * 109.47518 * 65.00068 * 13 2 1 15 15 C 1.46894 * 111.00427 * 179.97438 * 14 13 2 16 16 C 1.52997 * 119.30009 * 250.94940 * 15 14 13 17 17 C 1.52994 * 60.37997 * 247.75577 * 16 15 14 18 18 H 1.09005 * 119.75474 * 111.12038 * 17 16 15 19 19 C 1.54264 * 118.20169 * 266.38149 * 17 16 15 20 20 C 1.54897 * 104.19493 * 87.78956 * 19 17 16 21 21 C 1.54268 * 117.41144 * 45.29191 * 15 14 13 22 22 H 1.09002 * 109.46923 * 60.00151 * 1 2 3 23 23 H 1.08997 * 109.47097 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47121 * 299.99667 * 1 2 3 25 25 H 1.09005 * 109.47109 * 54.99880 * 4 2 1 26 26 H 1.08999 * 109.47408 * 175.00150 * 4 2 1 27 27 H 0.97004 * 120.00018 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.47387 * 304.99654 * 13 2 1 29 29 H 1.09001 * 109.47285 * 185.00165 * 13 2 1 30 30 H 1.00904 * 110.99815 * 56.04233 * 14 13 2 31 31 H 1.08994 * 117.46490 * 355.35869 * 16 15 14 32 32 H 1.09012 * 117.46044 * 140.18378 * 16 15 14 33 33 H 1.08998 * 110.49036 * 329.11413 * 19 17 16 34 34 H 1.09000 * 110.49063 * 206.46453 * 19 17 16 35 35 H 1.09000 * 110.75568 * 80.37108 * 20 19 17 36 36 H 1.09002 * 110.75327 * 203.73969 * 20 19 17 37 37 H 1.08998 * 110.48695 * 358.90214 * 21 15 14 38 38 H 1.08999 * 110.48827 * 236.25772 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6413 0.0570 2.4765 6 1 1.0807 0.9745 2.3757 7 6 1.9924 -0.4024 3.7283 8 7 2.6756 -1.5194 3.8511 9 14 1.4988 0.5627 5.2496 10 1 0.7423 1.7743 4.8434 11 1 0.6441 -0.2859 6.1183 12 1 2.7171 0.9665 5.9965 13 6 2.0399 -0.7212 -1.2492 14 7 1.6513 0.0374 -2.4457 15 6 2.1257 -0.6264 -3.6672 16 6 3.2674 0.0041 -4.4669 17 6 1.8615 -0.0472 -5.0680 18 1 1.2967 0.8754 -5.2026 19 6 1.5004 -1.2399 -5.9773 20 6 0.9810 -2.3211 -4.9972 21 6 1.9160 -2.1511 -3.7741 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6054 -1.7199 1.2951 26 1 3.1264 -0.7995 1.2055 27 1 2.9223 -1.8428 4.7317 28 1 1.6053 -1.7198 -1.2952 29 1 3.1263 -0.7995 -1.2056 30 1 1.9881 0.9874 -2.3967 31 1 3.6374 0.9743 -4.1355 32 1 4.0177 -0.6665 -4.8861 33 1 2.3837 -1.5974 -6.5064 34 1 0.7193 -0.9585 -6.6836 35 1 -0.0554 -2.1265 -4.7212 36 1 1.0866 -3.3164 -5.4288 37 1 1.4382 -2.5346 -2.8725 38 1 2.8664 -2.6557 -3.9474 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897375453.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:19 Heat of formation + Delta-G solvation = -16.425242 kcal Electronic energy + Delta-G solvation = -15356.197116 eV Core-core repulsion = 13004.371709 eV Total energy + Delta-G solvation = -2351.825407 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.71257 -37.75037 -35.00277 -33.44830 -32.03294 -28.96996 -28.35276 -26.66906 -24.43658 -23.54847 -21.32983 -20.61730 -19.87159 -18.47288 -17.32920 -16.53822 -16.24402 -15.78230 -15.35981 -14.71381 -14.45260 -14.23303 -14.14770 -13.68197 -13.40183 -13.19611 -12.81379 -12.66074 -12.53304 -12.22848 -12.10750 -11.95413 -11.86531 -11.73818 -11.50659 -11.36225 -11.10442 -11.02111 -10.57533 -10.54010 -9.01311 -8.17859 -6.27111 1.39912 1.40369 1.53518 2.41804 2.68160 3.15493 3.16878 3.59013 3.71917 3.92756 4.14900 4.27763 4.40387 4.44193 4.49315 4.55092 4.68686 4.74955 4.84771 4.86753 4.89449 4.95816 4.99452 5.03614 5.16465 5.22744 5.29754 5.33303 5.44930 5.48978 5.50441 5.55986 5.79849 5.87883 6.11625 6.31099 6.48193 6.88872 7.41314 8.94518 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.059187 B = 0.004925 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.965326 B = 5684.042467 C = 5736.425958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.075 4.075 3 H 0.053 0.947 4 C 0.033 3.967 5 C -0.529 4.529 6 H 0.061 0.939 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.082 3.918 14 N -0.643 5.643 15 C 0.020 3.980 16 C -0.184 4.184 17 C -0.149 4.149 18 H 0.109 0.891 19 C -0.089 4.089 20 C -0.115 4.115 21 C -0.092 4.092 22 H 0.065 0.935 23 H 0.035 0.965 24 H 0.038 0.962 25 H -0.010 1.010 26 H -0.014 1.014 27 H 0.262 0.738 28 H 0.065 0.935 29 H 0.015 0.985 30 H 0.343 0.657 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.734 1.353 -18.520 18.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 H 0.071 0.929 4 C -0.005 4.005 5 C -0.567 4.567 6 H 0.079 0.921 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.205 1.205 13 C -0.047 4.047 14 N -0.271 5.271 15 C -0.072 4.072 16 C -0.224 4.224 17 C -0.169 4.169 18 H 0.127 0.873 19 C -0.127 4.127 20 C -0.153 4.153 21 C -0.130 4.130 22 H 0.084 0.916 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.009 0.991 26 H 0.004 0.996 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.033 0.967 30 H 0.161 0.839 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.325 0.964 -18.400 18.571 hybrid contribution 1.028 0.483 1.331 1.749 sum -1.297 1.446 -17.069 17.179 Atomic orbital electron populations 1.21477 0.94647 1.00380 1.00463 1.21032 0.96748 0.98398 0.93203 0.92877 1.19008 0.94069 0.94713 0.92689 1.21663 1.34395 1.08549 0.92052 0.92093 1.25953 0.95226 0.96095 1.02656 1.70112 1.40347 1.22974 1.24231 0.85446 0.78075 0.78893 0.78934 1.18571 1.20495 1.20505 1.21832 0.96397 0.97573 0.88868 1.60195 1.61837 1.05151 0.99931 1.22696 1.01530 0.94158 0.88850 1.23738 0.92022 1.02535 1.04084 1.23533 0.98339 1.00531 0.94452 0.87264 1.21950 1.01350 0.92795 0.96578 1.22610 0.98828 0.99513 0.94305 1.22005 1.00206 0.91457 0.99370 0.91643 0.94616 0.94240 0.99145 0.99609 0.92930 0.91671 0.96675 0.83891 0.88524 0.88420 0.90539 0.90019 0.91756 0.89847 0.92135 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.41 8.89 71.98 0.64 -3.77 16 2 C -0.07 -3.14 2.48 -10.79 -0.03 -3.17 16 3 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 4 C 0.03 1.76 4.45 29.85 0.13 1.89 16 5 C -0.53 -30.30 8.41 25.60 0.22 -30.09 16 6 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 7 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 8 N -0.94 -57.77 13.29 21.45 0.28 -57.49 16 9 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 10 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 13 C 0.08 2.94 4.70 86.30 0.41 3.34 16 14 N -0.64 -19.08 6.30 -466.61 -2.94 -22.02 16 15 C 0.02 0.50 2.99 4.25 0.01 0.51 16 16 C -0.18 -3.94 9.86 30.59 0.30 -3.64 16 17 C -0.15 -3.08 6.94 -10.07 -0.07 -3.15 16 18 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16 19 C -0.09 -1.50 6.63 31.67 0.21 -1.29 16 20 C -0.11 -2.18 6.91 31.89 0.22 -1.96 16 21 C -0.09 -2.22 6.08 31.67 0.19 -2.02 16 22 H 0.06 2.25 7.75 -2.39 -0.02 2.23 16 23 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.04 1.64 6.95 -2.39 -0.02 1.62 16 25 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 26 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 27 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 28 H 0.06 2.40 6.22 -2.38 -0.01 2.39 16 29 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.34 9.62 8.64 -89.69 -0.78 8.84 16 31 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.06 1.68 6.14 -2.39 -0.01 1.66 16 38 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -63.19 301.15 2.31 -60.88 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.24 Total: 14.71 kcal Atomic # 6 Polarization: -45.70 SS G_CDS: 2.70 Total: -43.01 kcal Atomic # 7 Polarization: -76.85 SS G_CDS: -2.65 Total: -79.50 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -63.19 2.31 -60.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897375453.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.455 kcal (2) G-P(sol) polarization free energy of solvation -63.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds