Wall clock time and date at job start Sun Mar 29 2020 22:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86799 * 120.00079 * 2 1 4 4 H 1.48504 * 109.47349 * 270.00198 * 3 2 1 5 5 H 1.48498 * 109.46917 * 30.00550 * 3 2 1 6 6 H 1.48502 * 109.47113 * 150.00246 * 3 2 1 7 7 C 1.37883 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00247 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99393 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.46773 * 179.97438 * 9 7 2 11 11 C 1.42903 * 114.00164 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47265 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.46948 * 65.00124 * 12 11 10 14 14 C 1.35925 * 116.99776 * 179.97438 * 13 12 11 15 15 C 1.39093 * 120.85444 * 359.71705 * 14 13 12 16 16 N 1.32294 * 119.03479 * 180.27556 * 15 14 13 17 17 C 1.31783 * 120.87262 * 359.97438 * 16 15 14 18 18 N 1.31783 * 121.89531 * 0.02562 * 17 16 15 19 19 C 1.32289 * 120.87494 * 359.97438 * 18 17 16 20 20 H 0.97007 * 120.00146 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.47321 * 60.00194 * 9 7 2 22 22 H 1.08995 * 109.47236 * 300.00271 * 9 7 2 23 23 H 1.09002 * 109.47199 * 60.00004 * 11 10 9 24 24 H 1.09000 * 109.46963 * 300.00249 * 11 10 9 25 25 H 1.08995 * 109.47035 * 304.99905 * 12 11 10 26 26 H 1.09001 * 109.46639 * 185.00056 * 12 11 10 27 27 H 1.07994 * 120.48333 * 0.25435 * 15 14 13 28 28 H 1.08001 * 119.05639 * 180.02562 * 17 16 15 29 29 H 1.07999 * 120.48829 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0017 11 6 1.5650 -4.8754 -0.0013 12 6 2.6480 -5.9562 -0.0020 13 8 3.3882 -5.8896 1.2185 14 6 4.3950 -6.7885 1.3795 15 6 4.6760 -7.7289 0.3939 16 7 5.6605 -8.5905 0.5905 17 6 6.3699 -8.5648 1.7007 18 7 6.1344 -7.6896 2.6574 19 6 5.1673 -6.7952 2.5363 20 1 -0.4851 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8896 23 1 0.9439 -4.9824 -0.8906 24 1 0.9459 -4.9826 0.8894 25 1 3.3209 -5.7957 -0.8443 26 1 2.1819 -6.9375 -0.0912 27 1 4.0987 -7.7555 -0.5184 28 1 7.1672 -9.2816 1.8304 29 1 4.9795 -6.0811 3.3244 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901704442.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:36 Heat of formation + Delta-G solvation = -61.133562 kcal Electronic energy + Delta-G solvation = -14393.456900 eV Core-core repulsion = 11702.600694 eV Total energy + Delta-G solvation = -2690.856205 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.21650 -39.82676 -38.34331 -34.97779 -34.78539 -32.51375 -30.93739 -29.02363 -26.03135 -25.03694 -24.52963 -23.27152 -19.45301 -18.89810 -18.49917 -18.37536 -17.81438 -16.87682 -16.36140 -16.25826 -15.55286 -15.18484 -15.06408 -14.61659 -14.27448 -13.76542 -13.26645 -13.04899 -12.74750 -12.69164 -12.37107 -12.24981 -11.94182 -11.88798 -11.30444 -10.91178 -10.31078 -10.24541 -9.74871 -8.33961 -6.45983 -0.09681 -0.05266 1.39518 1.41807 1.53958 1.96007 2.33296 2.72248 3.00106 3.06543 3.17903 3.23029 3.34140 3.72180 4.04275 4.10835 4.29097 4.42689 4.52839 4.65104 4.72542 4.84871 5.16154 5.21346 5.52814 5.73739 5.93889 6.14577 6.49885 6.78731 7.00085 7.25784 8.78053 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.046978 B = 0.004758 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.885781 B = 5883.530902 C = 6250.108662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.981 3.019 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.551 4.551 8 H 0.059 0.941 9 C 0.209 3.791 10 O -0.410 6.410 11 C 0.049 3.951 12 C 0.062 3.938 13 O -0.311 6.311 14 C 0.025 3.975 15 C 0.064 3.936 16 N -0.499 5.499 17 C 0.242 3.758 18 N -0.497 5.497 19 C 0.111 3.889 20 H 0.271 0.729 21 H -0.006 1.006 22 H -0.013 1.013 23 H 0.085 0.915 24 H 0.050 0.950 25 H 0.081 0.919 26 H 0.118 0.882 27 H 0.194 0.806 28 H 0.228 0.772 29 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.181 -15.347 0.935 16.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.804 3.196 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.191 1.191 7 C -0.589 4.589 8 H 0.077 0.923 9 C 0.134 3.866 10 O -0.330 6.330 11 C -0.027 4.027 12 C -0.012 4.012 13 O -0.222 6.222 14 C -0.026 4.026 15 C -0.103 4.103 16 N -0.214 5.214 17 C -0.045 4.045 18 N -0.211 5.211 19 C -0.056 4.056 20 H 0.080 0.920 21 H 0.012 0.988 22 H 0.005 0.995 23 H 0.103 0.897 24 H 0.069 0.931 25 H 0.099 0.901 26 H 0.136 0.864 27 H 0.211 0.789 28 H 0.244 0.756 29 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 7.862 -15.706 1.176 17.604 hybrid contribution -0.973 1.358 -0.243 1.688 sum 6.890 -14.348 0.933 15.944 Atomic orbital electron populations 1.70050 1.07635 1.28687 1.50382 1.25927 0.95981 1.03295 0.93919 0.85212 0.78340 0.77168 0.78880 1.19178 1.19848 1.19125 1.21391 0.94056 0.91026 1.52382 0.92262 1.19846 0.88527 0.84405 0.93845 1.87860 1.35514 1.14330 1.95325 1.22678 0.94862 0.83421 1.01765 1.23185 0.93525 0.99534 0.84957 1.86245 1.42958 1.52041 1.40954 1.21096 0.91707 0.92079 0.97692 1.23818 0.95970 0.90929 0.99546 1.68332 1.05774 1.23527 1.23729 1.25446 0.98369 0.96126 0.84601 1.68503 1.16379 1.04401 1.31811 1.23025 0.89846 0.96909 0.95853 0.91984 0.98844 0.99485 0.89701 0.93125 0.90077 0.86415 0.78888 0.75621 0.79873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.17 13.29 21.45 0.28 -54.89 15 2 C 0.01 0.43 5.46 84.66 0.46 0.89 15 3 Si 0.98 44.20 29.54 68.60 2.03 46.22 15 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 15 5 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 15 7 C -0.55 -32.71 9.43 25.60 0.24 -32.47 15 8 H 0.06 3.51 7.81 -2.91 -0.02 3.49 15 9 C 0.21 11.49 5.69 71.24 0.41 11.90 15 10 O -0.41 -19.44 10.29 -144.34 -1.49 -20.93 15 11 C 0.05 1.64 6.32 71.98 0.45 2.09 15 12 C 0.06 1.53 5.15 71.98 0.37 1.90 15 13 O -0.31 -9.18 10.13 -88.07 -0.89 -10.07 15 14 C 0.03 0.64 6.73 22.68 0.15 0.79 15 15 C 0.06 1.41 10.31 84.83 0.87 2.28 15 16 N -0.50 -11.30 10.43 -199.70 -2.08 -13.38 15 17 C 0.24 5.03 12.28 180.89 2.22 7.25 15 18 N -0.50 -11.94 10.43 -199.69 -2.08 -14.02 15 19 C 0.11 2.77 11.27 84.83 0.96 3.72 15 20 H 0.27 14.93 8.31 -92.70 -0.77 14.15 15 21 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 15 22 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 15 23 H 0.09 2.45 8.14 -2.39 -0.02 2.43 15 24 H 0.05 1.67 8.14 -2.39 -0.02 1.65 15 25 H 0.08 1.87 7.72 -2.39 -0.02 1.85 15 26 H 0.12 1.85 7.70 -2.39 -0.02 1.83 15 27 H 0.19 3.07 6.47 -2.91 -0.02 3.06 15 28 H 0.23 2.95 8.06 -2.91 -0.02 2.93 15 29 H 0.18 4.07 8.06 -2.91 -0.02 4.05 15 Total: -1.00 -70.30 264.77 3.05 -67.24 By element: Atomic # 1 Polarization: 0.31 SS G_CDS: 1.15 Total: 1.46 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 6.14 Total: -1.64 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -3.88 Total: -82.28 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -2.38 Total: -31.00 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -70.30 3.05 -67.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901704442.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.108 kcal (2) G-P(sol) polarization free energy of solvation -70.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds