Wall clock time and date at job start Sun Mar 29 2020 21:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99847 * 2 1 4 4 H 1.48499 * 109.47192 * 269.99758 * 3 2 1 5 5 H 1.48497 * 109.46824 * 30.00192 * 3 2 1 6 6 H 1.48502 * 109.47065 * 149.99910 * 3 2 1 7 7 C 1.37873 * 120.00335 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99902 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00268 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47309 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47228 * 180.02562 * 10 9 7 12 12 O 1.45197 * 109.46878 * 180.02562 * 11 10 9 13 13 C 1.34777 * 116.99899 * 180.02562 * 12 11 10 14 14 O 1.21536 * 119.99815 * 359.97438 * 13 12 11 15 15 C 1.47226 * 120.00221 * 179.97438 * 13 12 11 16 16 C 1.47056 * 127.20304 * 180.24389 * 15 13 12 17 17 C 1.34159 * 105.95239 * 180.17757 * 16 15 13 18 18 O 1.34224 * 109.14014 * 359.63130 * 17 16 15 19 19 C 1.33616 * 110.92704 * 0.24657 * 18 17 16 20 20 H 0.96996 * 120.00254 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47052 * 60.00199 * 9 7 2 22 22 H 1.09003 * 109.47317 * 299.99850 * 9 7 2 23 23 H 1.09006 * 109.47061 * 59.99765 * 10 9 7 24 24 H 1.09003 * 109.47326 * 299.99914 * 10 9 7 25 25 H 1.08992 * 109.47299 * 59.99989 * 11 10 9 26 26 H 1.08997 * 109.46640 * 299.99737 * 11 10 9 27 27 H 1.07998 * 127.02707 * 0.08290 * 16 15 13 28 28 H 1.08002 * 125.43287 * 179.90426 * 17 16 15 29 29 H 1.07998 * 125.81140 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6364 0.0023 11 6 5.5517 -2.6364 0.0035 12 8 6.0356 -4.0053 0.0040 13 6 7.3718 -4.1819 0.0056 14 8 8.1121 -3.2181 0.0062 15 6 7.9346 -5.5424 0.0068 16 6 9.3568 -5.9163 0.0136 17 6 9.3854 -7.2576 0.0081 18 8 8.1271 -7.7246 0.0068 19 6 7.2454 -6.7207 0.0061 20 1 -0.4850 0.8400 -0.0004 21 1 3.8746 -0.6800 0.8911 22 1 3.8753 -0.6803 -0.8889 23 1 3.6586 -3.1509 -0.8875 24 1 3.6580 -3.1497 0.8925 25 1 5.9143 -2.1221 0.8934 26 1 5.9156 -2.1231 -0.8865 27 1 10.2050 -5.2478 0.0200 28 1 10.2786 -7.8648 0.0093 29 1 6.1703 -6.8238 0.0046 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912958666.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:37 Heat of formation + Delta-G solvation = -83.783329 kcal Electronic energy + Delta-G solvation = -14266.911000 eV Core-core repulsion = 11542.779875 eV Total energy + Delta-G solvation = -2724.131124 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.81402 -39.97503 -36.46029 -34.09660 -33.15906 -31.84886 -30.24293 -27.64224 -24.58411 -22.67492 -21.72804 -20.59836 -20.16583 -18.38773 -17.13160 -16.67219 -16.60903 -16.05866 -15.79375 -14.64896 -14.20510 -14.12825 -13.22927 -13.05431 -12.83982 -12.64203 -12.38885 -11.91143 -11.07108 -10.97683 -10.66452 -10.44861 -10.14735 -10.02683 -9.82291 -9.73784 -9.25946 -9.11442 -8.57553 -6.07837 -4.06968 1.03093 1.74502 2.55679 2.86754 3.04077 3.29597 3.37249 3.40792 4.38092 4.42384 4.45673 4.90946 5.23059 5.25472 5.37747 5.45133 5.48394 5.66235 5.85453 5.95883 6.33172 6.37450 6.62926 6.65705 6.78466 7.19795 7.31340 7.71536 7.88084 8.48635 8.96164 9.53658 11.05244 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.067799 B = 0.004447 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.888464 B = 6294.850954 C = 6681.989216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.101 4.101 11 C 0.068 3.932 12 O -0.355 6.355 13 C 0.532 3.468 14 O -0.510 6.510 15 C -0.229 4.229 16 C -0.163 4.163 17 C -0.043 4.043 18 O -0.174 6.174 19 C 0.056 3.944 20 H 0.264 0.736 21 H 0.019 0.981 22 H 0.015 0.985 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.161 0.839 28 H 0.211 0.789 29 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.378 -13.843 0.042 22.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.139 4.139 11 C -0.005 4.005 12 O -0.272 6.272 13 C 0.377 3.623 14 O -0.400 6.400 15 C -0.232 4.232 16 C -0.182 4.182 17 C -0.108 4.108 18 O -0.069 6.069 19 C -0.015 4.015 20 H 0.074 0.926 21 H 0.038 0.962 22 H 0.033 0.967 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.179 0.821 28 H 0.227 0.773 29 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 17.341 -13.704 0.046 22.102 hybrid contribution 0.486 1.360 -0.020 1.445 sum 17.826 -12.344 0.026 21.683 Atomic orbital electron populations 1.69905 1.06272 1.26987 1.50829 1.25019 0.94770 0.99196 0.94461 0.86781 0.80379 0.83565 0.78603 1.20207 1.21271 1.18971 1.21048 0.89018 0.94664 1.51228 0.90790 1.19525 0.97538 0.91052 0.96725 1.21569 0.88627 1.00853 1.02835 1.23524 0.97015 0.77721 1.02256 1.86532 1.22433 1.34589 1.83630 1.19982 0.81246 0.88161 0.72936 1.90834 1.60750 1.42196 1.46215 1.20708 0.94177 0.91506 1.16773 1.22770 0.95254 0.95097 1.05097 1.23941 0.85560 0.94357 1.06985 1.83830 1.15945 1.36581 1.70565 1.24838 0.95826 0.84130 0.96660 0.92641 0.96248 0.96670 0.91491 0.91475 0.91394 0.91409 0.82117 0.77271 0.75978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.69 13.96 55.43 0.77 -26.92 15 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 15 3 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 15 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 15 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 6 H -0.27 -6.30 6.54 56.52 0.37 -5.93 15 7 C -0.52 -14.79 9.66 -34.44 -0.33 -15.12 15 8 H 0.07 2.24 7.99 -52.48 -0.42 1.82 15 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 15 10 C -0.10 -1.99 5.53 -26.73 -0.15 -2.14 15 11 C 0.07 1.19 5.48 37.16 0.20 1.39 15 12 O -0.36 -5.76 10.07 -40.70 -0.41 -6.17 15 13 C 0.53 8.44 7.95 34.38 0.27 8.71 15 14 O -0.51 -9.46 16.77 -19.29 -0.32 -9.78 15 15 C -0.23 -2.86 6.31 -103.30 -0.65 -3.51 15 16 C -0.16 -1.66 11.01 -37.44 -0.41 -2.07 15 17 C -0.04 -0.32 12.03 29.30 0.35 0.03 15 18 O -0.17 -1.56 10.52 7.72 0.08 -1.48 15 19 C 0.06 0.54 11.94 30.11 0.36 0.90 15 20 H 0.26 7.58 8.31 -40.82 -0.34 7.24 15 21 H 0.02 0.46 7.20 -51.93 -0.37 0.08 15 22 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 15 23 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 24 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 25 H 0.07 1.18 8.14 -51.93 -0.42 0.76 15 26 H 0.07 1.18 8.14 -51.93 -0.42 0.75 15 27 H 0.16 1.48 8.06 -52.49 -0.42 1.06 15 28 H 0.21 0.69 8.06 -52.49 -0.42 0.26 15 29 H 0.22 1.54 8.06 -52.49 -0.42 1.12 15 LS Contribution 266.77 15.07 4.02 4.02 Total: -1.00 -33.24 266.77 -4.41 -37.65 By element: Atomic # 1 Polarization: -0.70 SS G_CDS: -3.31 Total: -4.01 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -0.57 Total: -10.33 kcal Atomic # 7 Polarization: -27.69 SS G_CDS: 0.77 Total: -26.92 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.65 Total: -17.43 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -33.24 -4.41 -37.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912958666.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.137 kcal (2) G-P(sol) polarization free energy of solvation -33.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds