Wall clock time and date at job start Sun Mar 29 2020 22:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47104 * 2 1 4 4 S 1.81398 * 109.47335 * 120.00222 * 2 1 3 5 5 C 1.81397 * 102.99977 * 295.00065 * 4 2 1 6 6 C 1.50701 * 109.46952 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00463 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99898 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99923 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 119.99899 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47049 * 90.00784 * 10 8 6 12 12 H 1.48506 * 109.47340 * 210.00056 * 10 8 6 13 13 H 1.48499 * 109.47472 * 330.00553 * 10 8 6 14 14 C 1.50701 * 109.47303 * 240.00567 * 2 1 3 15 15 N 1.31789 * 119.12496 * 104.99690 * 14 2 1 16 16 C 1.32334 * 120.82070 * 180.02562 * 15 14 2 17 17 C 1.38603 * 119.10298 * 0.02562 * 16 15 14 18 18 C 1.38597 * 118.39883 * 0.02562 * 17 16 15 19 19 N 1.31792 * 119.11936 * 285.02296 * 14 2 1 20 20 H 1.09001 * 109.46886 * 59.99459 * 1 2 3 21 21 H 1.08993 * 109.47146 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47142 * 299.99789 * 1 2 3 23 23 H 1.08993 * 109.47383 * 299.99428 * 5 4 2 24 24 H 1.09008 * 109.47336 * 59.99743 * 5 4 2 25 25 H 0.96999 * 119.99548 * 179.97438 * 9 8 6 26 26 H 1.08002 * 120.45044 * 179.72914 * 16 15 14 27 27 H 1.07995 * 120.80026 * 180.02562 * 17 16 15 28 28 H 1.07999 * 120.44737 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8552 1.4811 5 6 1.5665 0.2152 2.8309 6 6 1.9975 -0.3698 4.1511 7 1 2.5576 -1.2928 4.1758 8 6 1.6776 0.2741 5.3277 9 7 0.9960 1.3985 5.2977 10 14 2.2112 -0.4513 6.9642 11 1 3.5497 0.0793 7.3280 12 1 1.2293 -0.0792 8.0144 13 1 2.2789 -1.9305 6.8516 14 6 2.0324 -0.7103 -1.2305 15 7 2.5271 0.0002 -2.2242 16 6 2.9771 -0.5888 -3.3205 17 6 2.9223 -1.9706 -3.4144 18 6 2.3943 -2.6832 -2.3494 19 7 1.9648 -2.0254 -1.2845 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 2.0002 1.2083 2.7142 24 1 0.4792 0.2880 2.8037 25 1 0.7707 1.8512 6.1255 26 1 3.3773 -0.0005 -4.1330 27 1 3.2822 -2.4796 -4.2962 28 1 2.3360 -3.7610 -2.3873 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000917847708.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:54 Heat of formation + Delta-G solvation = 17.252753 kcal Electronic energy + Delta-G solvation = -12495.927821 eV Core-core repulsion = 10251.223572 eV Total energy + Delta-G solvation = -2244.704249 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.98910 -35.49710 -35.27637 -34.69357 -31.78711 -30.54968 -26.13348 -25.47740 -25.20469 -23.02606 -18.87669 -18.60977 -17.99996 -16.97972 -16.44603 -16.13601 -15.93716 -15.21046 -14.92888 -14.48224 -14.34373 -14.21738 -13.85495 -13.24727 -12.83733 -12.64902 -12.54341 -11.94466 -11.83831 -11.72931 -11.52280 -10.73695 -10.66820 -10.39810 -10.16920 -8.46114 -8.32377 -6.45400 -0.17375 0.20702 0.92586 1.40316 1.41770 1.54244 1.98028 2.37583 2.76430 2.81223 3.02011 3.33221 3.78775 3.92192 3.97586 4.21120 4.25782 4.46871 4.61956 4.71416 4.88574 4.95131 4.96275 5.11061 5.45363 5.57727 5.89894 6.10176 6.61398 7.12700 7.22067 8.79793 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.061014 B = 0.005837 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.799807 B = 4795.574842 C = 5006.345640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.005 3.995 3 H 0.095 0.905 4 S -0.270 6.270 5 C 0.089 3.911 6 C -0.536 4.536 7 H 0.060 0.940 8 C 0.015 3.985 9 N -0.924 5.924 10 Si 0.977 3.023 11 H -0.269 1.269 12 H -0.274 1.274 13 H -0.266 1.266 14 C 0.325 3.675 15 N -0.539 5.539 16 C 0.135 3.865 17 C -0.210 4.210 18 C 0.132 3.868 19 N -0.528 5.528 20 H 0.077 0.923 21 H 0.067 0.933 22 H 0.059 0.941 23 H 0.011 0.989 24 H 0.022 0.978 25 H 0.271 0.729 26 H 0.207 0.793 27 H 0.195 0.805 28 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.310 -5.728 -17.735 18.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.126 4.126 3 H 0.114 0.886 4 S -0.043 6.043 5 C -0.058 4.058 6 C -0.575 4.575 7 H 0.079 0.921 8 C -0.185 4.185 9 N -0.563 5.563 10 Si 0.800 3.200 11 H -0.194 1.194 12 H -0.199 1.199 13 H -0.190 1.190 14 C 0.057 3.943 15 N -0.254 5.254 16 C -0.030 4.030 17 C -0.231 4.231 18 C -0.033 4.033 19 N -0.242 5.242 20 H 0.096 0.904 21 H 0.086 0.914 22 H 0.078 0.922 23 H 0.030 0.970 24 H 0.040 0.960 25 H 0.080 0.920 26 H 0.223 0.777 27 H 0.212 0.788 28 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 2.482 -6.066 -16.776 18.011 hybrid contribution -0.245 0.764 0.196 0.826 sum 2.238 -5.302 -16.580 17.551 Atomic orbital electron populations 1.21887 0.90806 1.03259 1.02647 1.21660 0.99939 1.00184 0.90787 0.88647 1.86703 1.76369 1.40585 1.00632 1.20819 0.97646 0.94477 0.92903 1.20960 1.36892 1.09358 0.90302 0.92141 1.25906 0.94463 0.95062 1.03108 1.70061 1.39127 1.17685 1.29385 0.85271 0.78373 0.78903 0.77460 1.19431 1.19863 1.19010 1.21923 0.92321 0.87185 0.92879 1.68154 1.12114 1.42638 1.02504 1.23992 0.90811 0.94012 0.94170 1.23376 1.01233 0.96123 1.02408 1.23994 0.89396 1.02700 0.87235 1.68230 1.18161 1.09620 1.28179 0.90418 0.91382 0.92220 0.97037 0.95952 0.92045 0.77685 0.78789 0.78402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.43 9.08 71.98 0.65 -3.78 15 2 C 0.00 0.19 3.19 29.85 0.10 0.28 15 3 H 0.10 3.78 8.12 -2.39 -0.02 3.76 15 4 S -0.27 -12.84 20.61 -56.49 -1.16 -14.00 15 5 C 0.09 4.94 5.39 71.24 0.38 5.33 15 6 C -0.54 -31.68 9.13 25.60 0.23 -31.45 15 7 H 0.06 3.57 7.71 -2.91 -0.02 3.55 15 8 C 0.02 0.89 5.46 84.66 0.46 1.35 15 9 N -0.92 -55.25 13.29 21.45 0.28 -54.97 15 10 Si 0.98 44.61 29.54 68.60 2.03 46.63 15 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 12 H -0.27 -11.94 7.11 99.48 0.71 -11.24 15 13 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 14 C 0.33 11.25 6.43 138.75 0.89 12.14 15 15 N -0.54 -16.17 10.32 -187.84 -1.94 -18.11 15 16 C 0.14 2.63 11.31 84.70 0.96 3.59 15 17 C -0.21 -3.20 10.17 22.44 0.23 -2.98 15 18 C 0.13 2.82 11.31 84.70 0.96 3.78 15 19 N -0.53 -17.12 9.76 -187.85 -1.83 -18.95 15 20 H 0.08 2.31 8.14 -2.39 -0.02 2.29 15 21 H 0.07 2.40 8.14 -2.39 -0.02 2.38 15 22 H 0.06 2.24 6.92 -2.39 -0.02 2.22 15 23 H 0.01 0.66 8.14 -2.39 -0.02 0.65 15 24 H 0.02 1.28 7.14 -2.39 -0.02 1.26 15 25 H 0.27 15.04 8.31 -92.71 -0.77 14.27 15 26 H 0.21 2.15 8.06 -2.91 -0.02 2.13 15 27 H 0.19 1.02 8.06 -2.91 -0.02 1.00 15 28 H 0.20 2.72 8.06 -2.91 -0.02 2.70 15 Total: -1.00 -71.81 263.09 3.39 -68.43 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: 1.15 Total: 2.70 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 4.86 Total: -11.73 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -3.49 Total: -92.02 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: -12.84 SS G_CDS: -1.16 Total: -14.00 kcal Total: -71.81 3.39 -68.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917847708.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.678 kcal (2) G-P(sol) polarization free energy of solvation -71.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds