Wall clock time and date at job start Sun Mar 29 2020 22:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39872 * 126.03842 * 2 1 4 4 N 1.30838 * 108.20312 * 180.02562 * 3 2 1 5 5 N 1.40088 * 108.20068 * 359.77854 * 4 3 2 6 6 C 1.46503 * 126.03204 * 180.22797 * 5 4 3 7 7 C 1.53000 * 109.47420 * 305.15988 * 6 5 4 8 8 C 1.50706 * 109.46865 * 180.02562 * 7 6 5 9 9 O 1.21203 * 120.00109 * 359.97438 * 8 7 6 10 10 O 1.34314 * 119.99731 * 179.97438 * 8 7 6 11 11 C 1.34918 * 117.00040 * 179.97438 * 10 8 7 12 12 H 1.08000 * 119.99784 * 0.02562 * 11 10 8 13 13 C 1.38750 * 120.00053 * 179.97438 * 11 10 8 14 14 N 1.31436 * 120.00030 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99766 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47191 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46887 * 120.00086 * 15 13 11 18 18 H 1.48501 * 109.47134 * 239.99692 * 15 13 11 19 19 C 1.34940 * 107.93023 * 0.36844 * 5 4 3 20 20 H 1.08999 * 109.46941 * 269.97134 * 1 2 3 21 21 H 1.08991 * 109.47234 * 29.97396 * 1 2 3 22 22 H 1.09002 * 109.46951 * 149.98010 * 1 2 3 23 23 H 1.08001 * 125.89521 * 359.97438 * 3 2 1 24 24 H 1.09005 * 109.46694 * 65.16147 * 6 5 4 25 25 H 1.08999 * 109.47197 * 185.15258 * 6 5 4 26 26 H 1.08996 * 109.47042 * 299.99805 * 7 6 5 27 27 H 1.09000 * 109.47085 * 59.99765 * 7 6 5 28 28 H 0.97005 * 120.00253 * 180.02562 * 14 13 11 29 29 H 1.08002 * 126.13053 * 179.90865 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7303 -0.0006 5 7 3.5844 -0.6705 0.0042 6 6 4.7746 -1.5247 0.0100 7 6 5.6762 -1.1513 -1.1684 8 6 6.9002 -2.0305 -1.1626 9 8 7.0380 -2.8719 -0.3012 10 8 7.8384 -1.8815 -2.1122 11 6 8.9091 -2.7000 -2.0490 12 1 8.9824 -3.4333 -1.2596 13 6 9.9156 -2.6002 -2.9989 14 7 9.8261 -1.7081 -3.9600 15 14 11.3977 -3.7339 -2.9118 16 1 11.2588 -4.6415 -1.7447 17 1 11.4791 -4.5388 -4.1572 18 1 12.6331 -2.9232 -2.7648 19 6 2.3032 -1.0942 -0.0006 20 1 -0.3633 -0.0005 1.0277 21 1 -0.3633 0.8901 -0.5134 22 1 -0.3633 -0.8898 -0.5142 23 1 1.9950 2.1578 -0.0004 24 1 5.3192 -1.3826 0.9435 25 1 4.4732 -2.5684 -0.0795 26 1 5.1316 -1.2934 -2.1018 27 1 5.9775 -0.1076 -1.0788 28 1 10.5296 -1.6386 -4.6243 29 1 1.9724 -2.1223 -0.0001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919639508.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:20 Heat of formation + Delta-G solvation = -11.236172 kcal Electronic energy + Delta-G solvation = -14465.986995 eV Core-core repulsion = 11777.294503 eV Total energy + Delta-G solvation = -2688.692492 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.12693 -39.07010 -35.61312 -34.11386 -32.19566 -31.69088 -30.28131 -26.71725 -25.41596 -23.93485 -20.90932 -20.36773 -19.55187 -17.80992 -17.17431 -16.03614 -15.58355 -14.92668 -14.49391 -14.31917 -14.09846 -13.58530 -13.25155 -13.03468 -12.75382 -12.37829 -11.94002 -11.82300 -11.59634 -11.34996 -11.05969 -10.46867 -10.43145 -10.39795 -9.85109 -9.38335 -9.14021 -8.62617 -8.26976 -6.44959 -4.13515 1.97403 2.56704 2.83989 3.06414 3.17155 3.24739 3.45160 3.90952 4.41012 4.77512 4.87409 5.06017 5.09095 5.16598 5.26352 5.44665 5.56198 5.63910 5.80035 5.91484 6.04602 6.13728 6.17586 6.63780 6.74876 7.09667 7.35563 7.79331 7.90136 8.62797 9.03295 9.78419 10.72826 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.078286 B = 0.004681 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 357.577139 B = 5980.636245 C = 6148.614567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.252 4.252 3 C 0.043 3.957 4 N -0.291 5.291 5 N -0.366 5.366 6 C 0.150 3.850 7 C -0.114 4.114 8 C 0.401 3.599 9 O -0.561 6.561 10 O -0.211 6.211 11 C -0.384 4.384 12 H 0.097 0.903 13 C 0.041 3.959 14 N -0.863 5.863 15 Si 0.944 3.056 16 H -0.265 1.265 17 H -0.276 1.276 18 H -0.276 1.276 19 C 0.056 3.944 20 H 0.057 0.943 21 H 0.060 0.940 22 H 0.058 0.942 23 H 0.180 0.820 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.270 0.730 29 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.533 2.178 5.397 15.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.264 4.264 3 C -0.143 4.143 4 N -0.112 5.112 5 N -0.147 5.147 6 C 0.029 3.971 7 C -0.153 4.153 8 C 0.247 3.753 9 O -0.460 6.460 10 O -0.117 6.117 11 C -0.460 4.460 12 H 0.115 0.885 13 C -0.163 4.163 14 N -0.500 5.500 15 Si 0.769 3.231 16 H -0.189 1.189 17 H -0.201 1.201 18 H -0.201 1.201 19 C -0.091 4.091 20 H 0.076 0.924 21 H 0.079 0.921 22 H 0.077 0.923 23 H 0.197 0.803 24 H 0.113 0.887 25 H 0.123 0.877 26 H 0.113 0.887 27 H 0.123 0.877 28 H 0.080 0.920 29 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -12.981 2.297 5.412 14.250 hybrid contribution -0.089 -0.758 -0.072 0.767 sum -13.069 1.538 5.340 14.202 Atomic orbital electron populations 1.20004 0.89540 1.01923 1.01207 1.20118 0.96973 0.91959 1.17364 1.23774 0.90061 0.99685 1.00808 1.77375 1.21167 0.89119 1.23545 1.48756 1.05604 1.04717 1.55656 1.21508 0.82997 0.92363 1.00212 1.21240 0.93285 1.01421 0.99357 1.22801 0.85697 0.84690 0.82067 1.90561 1.79232 1.37149 1.39034 1.83874 1.27931 1.54460 1.45448 1.21297 0.95514 1.15193 1.13967 0.88497 1.25376 0.98657 0.97513 0.94745 1.70006 1.33738 1.32710 1.13513 0.85591 0.79635 0.79212 0.78670 1.18920 1.20137 1.20109 1.22373 0.84245 1.00083 1.02399 0.92445 0.92065 0.92344 0.80346 0.88737 0.87735 0.88695 0.87700 0.92029 0.81123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.37 36.01 0.37 -0.20 15 2 C -0.25 -2.96 6.10 -105.05 -0.64 -3.60 15 3 C 0.04 0.55 11.96 -17.36 -0.21 0.34 15 4 N -0.29 -4.62 12.42 30.63 0.38 -4.24 15 5 N -0.37 -5.45 3.68 -61.36 -0.23 -5.67 15 6 C 0.15 2.33 5.80 -4.04 -0.02 2.31 15 7 C -0.11 -2.10 5.99 -27.88 -0.17 -2.27 15 8 C 0.40 9.72 7.91 36.01 0.28 10.01 15 9 O -0.56 -14.49 15.22 -19.05 -0.29 -14.78 15 10 O -0.21 -6.06 9.75 -20.71 -0.20 -6.26 15 11 C -0.38 -11.35 9.64 30.92 0.30 -11.06 15 12 H 0.10 2.87 6.86 -52.49 -0.36 2.51 15 13 C 0.04 1.17 5.49 -17.53 -0.10 1.08 15 14 N -0.86 -25.46 13.67 55.48 0.76 -24.70 15 15 Si 0.94 21.27 29.55 -169.99 -5.02 16.24 15 16 H -0.27 -5.87 7.11 56.52 0.40 -5.46 15 17 H -0.28 -6.00 7.11 56.52 0.40 -5.60 15 18 H -0.28 -6.01 7.11 56.52 0.40 -5.61 15 19 C 0.06 0.68 11.36 -17.23 -0.20 0.49 15 20 H 0.06 0.43 8.14 -51.93 -0.42 0.01 15 21 H 0.06 0.45 8.14 -51.93 -0.42 0.03 15 22 H 0.06 0.43 8.14 -51.93 -0.42 0.01 15 23 H 0.18 1.72 8.06 -52.49 -0.42 1.29 15 24 H 0.09 1.51 8.10 -51.93 -0.42 1.09 15 25 H 0.10 1.47 8.03 -51.93 -0.42 1.05 15 26 H 0.09 1.65 8.14 -51.93 -0.42 1.23 15 27 H 0.10 1.94 8.14 -51.93 -0.42 1.52 15 28 H 0.27 7.25 8.31 -40.82 -0.34 6.92 15 29 H 0.17 1.55 8.06 -52.49 -0.42 1.13 15 LS Contribution 268.34 15.07 4.04 4.04 Total: -1.00 -33.93 268.34 -4.22 -38.15 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -3.29 Total: 0.12 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -0.37 Total: -2.90 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.91 Total: -34.61 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.49 Total: -21.04 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.93 -4.22 -38.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919639508.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.917 kcal (2) G-P(sol) polarization free energy of solvation -33.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds