Wall clock time and date at job start Sun Mar 29 2020 21:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35467 * 117.00343 * 2 1 4 4 N 1.32430 * 119.11083 * 359.97438 * 3 2 1 5 5 C 1.32154 * 121.00062 * 179.97438 * 4 3 2 6 6 C 1.38765 * 119.22823 * 0.02562 * 5 4 3 7 7 C 1.39575 * 118.37562 * 0.27502 * 6 5 4 8 8 C 1.48246 * 120.52217 * 179.70095 * 7 6 5 9 9 O 1.21448 * 120.00286 * 359.97438 * 8 7 6 10 10 O 1.34650 * 120.00221 * 180.02562 * 8 7 6 11 11 C 1.34788 * 117.00073 * 180.02562 * 10 8 7 12 12 H 1.08000 * 119.99647 * 359.97438 * 11 10 8 13 13 C 1.38902 * 119.99817 * 179.97438 * 11 10 8 14 14 N 1.31361 * 119.99786 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99830 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47317 * 90.00421 * 15 13 11 17 17 H 1.48505 * 109.46909 * 209.99968 * 15 13 11 18 18 H 1.48500 * 109.47396 * 329.99585 * 15 13 11 19 19 N 1.32068 * 119.11114 * 180.02562 * 3 2 1 20 20 H 1.08996 * 109.46809 * 59.99766 * 1 2 3 21 21 H 1.08993 * 109.47198 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.46737 * 300.00049 * 1 2 3 23 23 H 1.07998 * 120.38526 * 180.02562 * 5 4 3 24 24 H 1.08002 * 120.80759 * 179.97438 * 6 5 4 25 25 H 0.97004 * 119.99331 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2070 0.0000 4 7 1.3057 2.3063 -0.0005 5 6 1.8666 3.5030 0.0000 6 6 3.2507 3.6025 0.0005 7 6 4.0004 2.4253 -0.0054 8 6 5.4820 2.4762 -0.0118 9 8 6.0528 3.5482 -0.0124 10 8 6.1949 1.3339 -0.0180 11 6 7.5377 1.4507 -0.0230 12 1 7.9946 2.4293 -0.0224 13 6 8.3338 0.3125 -0.0290 14 7 7.7779 -0.8777 -0.0292 15 14 10.1947 0.4743 -0.0367 16 1 10.6940 0.5140 1.3612 17 1 10.7898 -0.6893 -0.7419 18 1 10.5798 1.7266 -0.7358 19 7 3.3639 1.2556 -0.0005 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8901 23 1 1.2549 4.3930 0.0000 24 1 3.7358 4.5674 0.0005 25 1 8.3340 -1.6726 -0.0337 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923922785.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:49 Heat of formation + Delta-G solvation = -78.562911 kcal Electronic energy + Delta-G solvation = -14604.578858 eV Core-core repulsion = 11777.133764 eV Total energy + Delta-G solvation = -2827.445093 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.063 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.44335 -40.98382 -39.32211 -37.41808 -35.12415 -34.39721 -32.60915 -28.66631 -28.05017 -26.37964 -24.95040 -22.67686 -20.13923 -19.90193 -19.26982 -18.08387 -17.58659 -17.10417 -16.68551 -16.36790 -16.24555 -15.60677 -14.99125 -14.91835 -14.56577 -13.69097 -13.29405 -12.91518 -12.48939 -12.38382 -12.31295 -12.21074 -12.08415 -11.98764 -11.55125 -10.78915 -10.40861 -10.19666 -8.63637 -6.41795 -0.72109 -0.06142 1.30884 1.31877 1.43296 1.53324 1.62477 1.98690 2.41524 2.63913 2.92722 2.95408 3.48248 3.79869 4.00187 4.30940 4.41870 4.42263 4.70607 4.77068 4.98503 5.06907 5.51216 5.68921 6.01708 6.39830 6.76760 6.87836 7.60465 8.55966 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.041676 B = 0.007088 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.687229 B = 3949.597433 C = 4606.135912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.313 6.313 3 C 0.485 3.515 4 N -0.548 5.548 5 C 0.210 3.790 6 C -0.203 4.203 7 C 0.184 3.816 8 C 0.427 3.573 9 O -0.555 6.555 10 O -0.210 6.210 11 C -0.424 4.424 12 H 0.096 0.904 13 C -0.003 4.003 14 N -0.888 5.888 15 Si 1.029 2.971 16 H -0.256 1.256 17 H -0.259 1.259 18 H -0.256 1.256 19 N -0.535 5.535 20 H 0.071 0.929 21 H 0.129 0.871 22 H 0.071 0.929 23 H 0.246 0.754 24 H 0.183 0.817 25 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.905 5.767 0.049 14.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.214 6.214 3 C 0.182 3.818 4 N -0.279 5.279 5 C 0.043 3.957 6 C -0.226 4.226 7 C 0.040 3.960 8 C 0.275 3.725 9 O -0.453 6.453 10 O -0.115 6.115 11 C -0.499 4.499 12 H 0.113 0.887 13 C -0.206 4.206 14 N -0.523 5.523 15 Si 0.845 3.155 16 H -0.181 1.181 17 H -0.183 1.183 18 H -0.180 1.180 19 N -0.265 5.265 20 H 0.089 0.911 21 H 0.147 0.853 22 H 0.089 0.911 23 H 0.262 0.738 24 H 0.200 0.800 25 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.086 4.523 0.046 13.846 hybrid contribution 1.069 0.522 0.005 1.189 sum -12.017 5.045 0.051 13.033 Atomic orbital electron populations 1.23342 0.73162 1.05586 1.03452 1.86128 1.25889 1.22421 1.86993 1.20747 0.85174 0.86052 0.89849 1.68145 1.40657 0.99364 1.19709 1.24018 0.91087 0.95370 0.85232 1.23049 0.96519 0.99596 1.03418 1.20472 0.91021 0.89488 0.95012 1.20980 0.87785 0.83166 0.80569 1.90599 1.71461 1.30704 1.52572 1.84012 1.21324 1.32756 1.73438 1.21816 0.77576 0.95989 1.54499 0.88672 1.26870 1.06842 0.92942 0.93940 1.70114 1.39401 0.98876 1.43915 0.84492 0.71857 0.79287 0.79828 1.18072 1.18272 1.18015 1.67476 1.09740 1.30784 1.18473 0.91074 0.85287 0.91075 0.73848 0.79989 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 10.36 113.37 1.17 1.97 15 2 O -0.31 -10.71 10.56 -87.65 -0.93 -11.63 15 3 C 0.48 18.08 8.48 180.61 1.53 19.61 15 4 N -0.55 -15.49 9.20 -313.47 -2.88 -18.37 15 5 C 0.21 4.68 11.30 84.77 0.96 5.64 15 6 C -0.20 -6.23 9.71 22.72 0.22 -6.01 15 7 C 0.18 8.17 6.79 41.93 0.28 8.45 15 8 C 0.43 23.39 7.90 70.48 0.56 23.94 15 9 O -0.56 -30.57 15.66 20.01 0.31 -30.25 15 10 O -0.21 -13.37 9.59 12.85 0.12 -13.25 15 11 C -0.42 -26.35 9.65 67.98 0.66 -25.69 15 12 H 0.10 5.81 6.86 -2.91 -0.02 5.79 15 13 C 0.00 -0.20 5.50 84.92 0.47 0.27 15 14 N -0.89 -54.25 13.67 21.65 0.30 -53.95 15 15 Si 1.03 43.23 29.55 68.60 2.03 45.26 15 16 H -0.26 -10.12 7.11 99.48 0.71 -9.41 15 17 H -0.26 -10.06 7.11 99.48 0.71 -9.35 15 18 H -0.26 -10.35 7.11 99.48 0.71 -9.64 15 19 N -0.54 -24.91 10.28 -302.78 -3.11 -28.02 15 20 H 0.07 1.31 8.09 -2.39 -0.02 1.29 15 21 H 0.13 1.87 8.14 -2.39 -0.02 1.85 15 22 H 0.07 1.30 8.09 -2.38 -0.02 1.28 15 23 H 0.25 2.17 8.06 -2.91 -0.02 2.15 15 24 H 0.18 4.78 7.73 -2.91 -0.02 4.76 15 25 H 0.28 15.53 8.31 -92.71 -0.77 14.76 15 Total: -1.00 -81.47 244.79 2.91 -78.55 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: 1.23 Total: 3.48 kcal Atomic # 6 Polarization: 22.35 SS G_CDS: 5.85 Total: 28.19 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -5.70 Total: -100.34 kcal Atomic # 8 Polarization: -54.65 SS G_CDS: -0.49 Total: -55.14 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -81.47 2.91 -78.55 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923922785.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.011 kcal (2) G-P(sol) polarization free energy of solvation -81.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds