Wall clock time and date at job start Sun Mar 29 2020 22:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35448 * 126.77714 * 2 1 4 4 C 1.41379 * 103.98624 * 180.09657 * 3 2 1 5 5 C 1.50700 * 126.80478 * 179.88633 * 4 3 2 6 6 N 1.46498 * 109.46769 * 94.71449 * 5 4 3 7 7 C 1.34777 * 119.99828 * 179.72341 * 6 5 4 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 C 1.50701 * 109.47355 * 180.02562 * 9 7 6 11 11 H 1.08000 * 119.99624 * 0.02562 * 10 9 7 12 12 C 1.37872 * 119.99634 * 179.97438 * 10 9 7 13 13 N 1.31515 * 120.00230 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99703 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46973 * 90.00366 * 14 12 10 16 16 H 1.48505 * 109.47151 * 210.00011 * 14 12 10 17 17 H 1.48500 * 109.47089 * 330.00544 * 14 12 10 18 18 N 1.30176 * 106.39512 * 359.63539 * 4 3 2 19 19 O 1.20923 * 111.60228 * 0.23088 * 18 4 3 20 20 H 1.08995 * 109.47419 * 180.29963 * 1 2 3 21 21 H 1.09002 * 109.47078 * 300.29387 * 1 2 3 22 22 H 1.08994 * 109.47300 * 60.29325 * 1 2 3 23 23 H 1.07999 * 128.00837 * 359.96959 * 3 2 1 24 24 H 1.09004 * 109.47210 * 334.71806 * 5 4 3 25 25 H 1.08994 * 109.47121 * 214.71776 * 5 4 3 26 26 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 27 27 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 28 28 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 29 29 H 0.97000 * 119.99613 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5372 -0.0023 5 6 4.9211 1.2999 -0.0057 6 7 5.4025 1.4503 1.3697 7 6 6.5590 2.0988 1.6118 8 8 7.1984 2.5623 0.6914 9 6 7.0575 2.2480 3.0261 10 6 8.3597 3.0065 3.0224 11 1 8.7837 3.3468 2.0892 12 6 9.0092 3.2668 4.2103 13 7 8.4926 2.8528 5.3467 14 14 10.6230 4.2076 4.2058 15 1 10.3483 5.6621 4.3245 16 1 11.4567 3.7661 5.3527 17 1 11.3469 3.9426 2.9365 18 7 3.4763 -0.7564 0.0045 19 8 2.3095 -1.0736 0.0060 20 1 -0.3634 -1.0276 0.0054 21 1 -0.3633 0.5184 0.8874 22 1 -0.3633 0.5092 -0.8925 23 1 2.0345 2.1270 -0.0005 24 1 4.7632 2.2849 -0.4451 25 1 5.6607 0.7548 -0.5921 26 1 4.8913 1.0793 2.1059 27 1 6.3209 2.7943 3.6152 28 1 7.2125 1.2613 3.4627 29 1 8.9494 3.0363 6.1825 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143188691.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:08 Heat of formation + Delta-G solvation = 12.579526 kcal Electronic energy + Delta-G solvation = -14441.441821 eV Core-core repulsion = 11753.782055 eV Total energy + Delta-G solvation = -2687.659766 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.07472 -38.69463 -35.38432 -33.77763 -32.91715 -32.70813 -29.23669 -28.03076 -26.78447 -23.49958 -23.01145 -20.29498 -19.70334 -17.75833 -17.37810 -16.37532 -16.05858 -15.12023 -14.81067 -14.51423 -14.20948 -13.91051 -13.56907 -12.92702 -12.80803 -12.64994 -12.40009 -12.04692 -11.32908 -11.09401 -10.78071 -10.60343 -10.45315 -9.95245 -9.49654 -9.26656 -8.68246 -8.56576 -8.41003 -6.04830 -4.04495 1.30979 2.00404 2.94895 3.35978 3.41040 3.48492 3.68002 3.91072 4.13090 4.30407 4.50840 4.84426 4.99139 5.07153 5.12448 5.33349 5.39044 5.47042 5.69882 5.82990 5.92230 6.31502 6.92632 7.18532 7.33091 7.96182 8.02916 8.14795 8.40834 9.06307 9.18321 9.60450 11.07593 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.067382 B = 0.004659 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.443688 B = 6009.019756 C = 6168.987334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.039 4.039 3 C -0.221 4.221 4 C 0.008 3.992 5 C 0.199 3.801 6 N -0.744 5.744 7 C 0.517 3.483 8 O -0.544 6.544 9 C 0.006 3.994 10 C -0.508 4.508 11 H 0.076 0.924 12 C 0.054 3.946 13 N -0.901 5.901 14 Si 0.903 3.097 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.272 1.272 18 N -0.351 5.351 19 O 0.104 5.896 20 H 0.082 0.918 21 H 0.090 0.910 22 H 0.089 0.911 23 H 0.173 0.827 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.397 0.603 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.544 -5.003 -8.586 20.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.103 4.103 3 C -0.243 4.243 4 C -0.151 4.151 5 C 0.075 3.925 6 N -0.400 5.400 7 C 0.307 3.693 8 O -0.420 6.420 9 C -0.033 4.033 10 C -0.546 4.546 11 H 0.094 0.906 12 C -0.147 4.147 13 N -0.541 5.541 14 Si 0.730 3.270 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.197 1.197 18 N -0.053 5.053 19 O 0.034 5.966 20 H 0.101 0.899 21 H 0.109 0.891 22 H 0.108 0.892 23 H 0.191 0.809 24 H 0.103 0.897 25 H 0.097 0.903 26 H 0.231 0.769 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.139 -5.679 -9.082 19.370 hybrid contribution 0.163 1.043 0.471 1.156 sum -15.977 -4.636 -8.611 18.732 Atomic orbital electron populations 1.20328 0.83967 1.04624 1.04122 1.24521 0.96428 0.86191 1.03120 1.22461 0.91165 1.01213 1.09428 1.23689 0.97510 0.90033 1.03884 1.19358 0.88242 0.98234 0.86708 1.46330 1.26016 1.60816 1.06870 1.22072 0.78037 0.74894 0.94255 1.90543 1.56310 1.47960 1.47170 1.19245 0.98071 0.99571 0.86404 1.21167 1.04935 1.34679 0.93867 0.90628 1.25019 0.98230 0.96084 0.95358 1.69964 1.39639 1.46798 0.97682 0.86409 0.83059 0.79889 0.77607 1.20606 1.21270 1.19656 1.73913 0.96722 1.16432 1.18248 1.84846 1.11332 1.33280 1.67106 0.89923 0.89105 0.89216 0.80932 0.89707 0.90349 0.76915 0.93371 0.93364 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.45 36.01 0.38 0.02 15 2 C -0.04 -0.37 7.49 -35.30 -0.26 -0.64 15 3 C -0.22 -2.37 11.06 -39.38 -0.44 -2.81 15 4 C 0.01 0.10 6.70 -82.10 -0.55 -0.44 15 5 C 0.20 3.15 6.26 -5.19 -0.03 3.12 15 6 N -0.74 -13.53 5.55 -61.47 -0.34 -13.87 15 7 C 0.52 12.04 7.82 -10.98 -0.09 11.96 15 8 O -0.54 -14.36 15.46 5.55 0.09 -14.28 15 9 C 0.01 0.17 5.46 -29.03 -0.16 0.01 15 10 C -0.51 -14.95 8.92 -34.44 -0.31 -15.26 15 11 H 0.08 2.31 6.75 -52.49 -0.35 1.96 15 12 C 0.05 1.56 5.46 -17.82 -0.10 1.46 15 13 N -0.90 -26.74 13.29 55.43 0.74 -26.00 15 14 Si 0.90 22.36 29.54 -169.99 -5.02 17.34 15 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 15 17 H -0.27 -6.73 7.11 56.52 0.40 -6.33 15 18 N -0.35 -5.18 12.07 33.42 0.40 -4.78 15 19 O 0.10 1.28 11.20 17.19 0.19 1.47 15 20 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 15 21 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 15 22 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 15 23 H 0.17 1.46 8.06 -52.49 -0.42 1.03 15 24 H 0.08 1.27 8.14 -51.93 -0.42 0.85 15 25 H 0.08 1.32 8.14 -51.93 -0.42 0.90 15 26 H 0.40 6.49 8.46 -40.82 -0.35 6.14 15 27 H 0.05 1.25 8.14 -51.93 -0.42 0.83 15 28 H 0.05 1.27 8.14 -51.93 -0.42 0.85 15 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 15 LS Contribution 266.61 15.07 4.02 4.02 Total: -1.00 -34.02 266.61 -4.70 -38.72 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -3.22 Total: -0.04 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -1.55 Total: -2.59 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.80 Total: -44.65 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.28 Total: -12.80 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -34.02 -4.70 -38.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143188691.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.298 kcal (2) G-P(sol) polarization free energy of solvation -34.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds