Wall clock time and date at job start Sun Mar 29 2020 22:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35448 * 126.77714 * 2 1 4 4 C 1.41379 * 103.98624 * 180.09657 * 3 2 1 5 5 C 1.50700 * 126.80478 * 179.88633 * 4 3 2 6 6 N 1.46498 * 109.46769 * 94.71449 * 5 4 3 7 7 C 1.34777 * 119.99828 * 179.72341 * 6 5 4 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 C 1.50701 * 109.47355 * 180.02562 * 9 7 6 11 11 H 1.08000 * 119.99624 * 0.02562 * 10 9 7 12 12 C 1.37872 * 119.99634 * 179.97438 * 10 9 7 13 13 N 1.31515 * 120.00230 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99703 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46973 * 90.00366 * 14 12 10 16 16 H 1.48505 * 109.47151 * 210.00011 * 14 12 10 17 17 H 1.48500 * 109.47089 * 330.00544 * 14 12 10 18 18 N 1.30176 * 106.39512 * 359.63539 * 4 3 2 19 19 O 1.20923 * 111.60228 * 0.23088 * 18 4 3 20 20 H 1.08995 * 109.47419 * 180.29963 * 1 2 3 21 21 H 1.09002 * 109.47078 * 300.29387 * 1 2 3 22 22 H 1.08994 * 109.47300 * 60.29325 * 1 2 3 23 23 H 1.07999 * 128.00837 * 359.96959 * 3 2 1 24 24 H 1.09004 * 109.47210 * 334.71806 * 5 4 3 25 25 H 1.08994 * 109.47121 * 214.71776 * 5 4 3 26 26 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 27 27 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 28 28 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 29 29 H 0.97000 * 119.99613 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5372 -0.0023 5 6 4.9211 1.2999 -0.0057 6 7 5.4025 1.4503 1.3697 7 6 6.5590 2.0988 1.6118 8 8 7.1984 2.5623 0.6914 9 6 7.0575 2.2480 3.0261 10 6 8.3597 3.0065 3.0224 11 1 8.7837 3.3468 2.0892 12 6 9.0092 3.2668 4.2103 13 7 8.4926 2.8528 5.3467 14 14 10.6230 4.2076 4.2058 15 1 10.3483 5.6621 4.3245 16 1 11.4567 3.7661 5.3527 17 1 11.3469 3.9426 2.9365 18 7 3.4763 -0.7564 0.0045 19 8 2.3095 -1.0736 0.0060 20 1 -0.3634 -1.0276 0.0054 21 1 -0.3633 0.5184 0.8874 22 1 -0.3633 0.5092 -0.8925 23 1 2.0345 2.1270 -0.0005 24 1 4.7632 2.2849 -0.4451 25 1 5.6607 0.7548 -0.5921 26 1 4.8913 1.0793 2.1059 27 1 6.3209 2.7943 3.6152 28 1 7.2125 1.2613 3.4627 29 1 8.9494 3.0363 6.1825 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143188691.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:08 Heat of formation + Delta-G solvation = -11.970387 kcal Electronic energy + Delta-G solvation = -14442.506385 eV Core-core repulsion = 11753.782055 eV Total energy + Delta-G solvation = -2688.724330 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -46.04293 -40.51059 -36.73268 -35.12031 -34.65890 -33.93618 -31.23533 -28.73849 -28.23022 -25.43355 -24.09431 -21.56358 -21.21925 -18.77901 -18.53629 -18.34658 -17.69879 -16.88518 -16.37634 -16.32336 -15.37339 -14.81735 -14.60864 -14.25505 -14.07604 -13.92734 -13.74905 -13.19028 -13.15615 -12.81023 -12.58572 -12.15381 -12.05812 -11.52365 -11.47227 -10.64430 -10.58301 -10.28838 -10.15467 -8.26718 -6.34558 0.44539 1.02829 1.40208 1.41346 1.54165 1.79638 2.19455 2.35472 2.53689 3.00420 3.08605 3.44404 4.06542 4.13674 4.25909 4.38773 4.57421 4.62391 4.79376 4.92297 4.96198 5.04002 5.21968 5.28506 5.36439 5.71439 6.00855 6.58124 6.79564 7.23790 7.29559 7.40983 8.85553 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.067382 B = 0.004659 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.443688 B = 6009.019756 C = 6168.987334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.023 4.023 3 C -0.227 4.227 4 C -0.010 4.010 5 C 0.203 3.797 6 N -0.724 5.724 7 C 0.523 3.477 8 O -0.579 6.579 9 C 0.009 3.991 10 C -0.538 4.538 11 H 0.057 0.943 12 C 0.008 3.992 13 N -0.925 5.925 14 Si 0.968 3.032 15 H -0.269 1.269 16 H -0.274 1.274 17 H -0.274 1.274 18 N -0.385 5.385 19 O 0.100 5.900 20 H 0.094 0.906 21 H 0.108 0.892 22 H 0.111 0.889 23 H 0.197 0.803 24 H 0.096 0.904 25 H 0.065 0.935 26 H 0.408 0.592 27 H 0.046 0.954 28 H 0.040 0.960 29 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.062 -4.690 -8.707 21.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.087 4.087 3 C -0.249 4.249 4 C -0.167 4.167 5 C 0.079 3.921 6 N -0.378 5.378 7 C 0.313 3.687 8 O -0.459 6.459 9 C -0.030 4.030 10 C -0.576 4.576 11 H 0.075 0.925 12 C -0.190 4.190 13 N -0.565 5.565 14 Si 0.792 3.208 15 H -0.194 1.194 16 H -0.199 1.199 17 H -0.199 1.199 18 N -0.088 5.088 19 O 0.031 5.969 20 H 0.113 0.887 21 H 0.127 0.873 22 H 0.129 0.871 23 H 0.214 0.786 24 H 0.114 0.886 25 H 0.083 0.917 26 H 0.243 0.757 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.704 -5.392 -9.194 20.665 hybrid contribution 0.492 0.881 0.499 1.126 sum -17.212 -4.511 -8.695 19.804 Atomic orbital electron populations 1.20616 0.80313 1.06095 1.05912 1.25360 0.98123 0.84806 1.00396 1.22736 0.89690 1.02736 1.09746 1.23525 0.97686 0.90161 1.05340 1.19353 0.89111 0.99090 0.84583 1.46002 1.24299 1.58809 1.08699 1.21483 0.79153 0.75347 0.92748 1.90521 1.57812 1.49889 1.47630 1.19080 0.97111 0.98565 0.88265 1.21373 1.06717 1.35976 0.93534 0.92465 1.25833 1.01632 0.96733 0.94838 1.70038 1.40999 1.47255 0.98210 0.85406 0.78761 0.78913 0.77708 1.19442 1.19897 1.19917 1.73908 0.98160 1.17036 1.19654 1.84805 1.10961 1.34337 1.66818 0.88686 0.87344 0.87068 0.78618 0.88582 0.91705 0.75660 0.93649 0.94230 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.45 71.24 0.74 0.32 15 2 C -0.02 -0.38 7.49 25.04 0.19 -0.20 15 3 C -0.23 -4.38 11.06 22.40 0.25 -4.14 15 4 C -0.01 -0.26 6.70 43.58 0.29 0.03 15 5 C 0.20 6.37 6.26 85.63 0.54 6.90 15 6 N -0.72 -26.29 5.55 -466.79 -2.59 -28.88 15 7 C 0.52 24.76 7.82 87.66 0.69 25.44 15 8 O -0.58 -31.21 15.46 -3.04 -0.05 -31.26 15 9 C 0.01 0.49 5.46 29.10 0.16 0.65 15 10 C -0.54 -32.23 8.92 25.60 0.23 -32.00 15 11 H 0.06 3.59 6.75 -2.91 -0.02 3.57 15 12 C 0.01 0.48 5.46 84.65 0.46 0.94 15 13 N -0.93 -54.86 13.29 21.45 0.28 -54.57 15 14 Si 0.97 45.80 29.54 68.60 2.03 47.82 15 15 H -0.27 -12.22 7.11 99.48 0.71 -11.51 15 16 H -0.27 -12.32 7.11 99.48 0.71 -11.61 15 17 H -0.27 -13.00 7.11 99.48 0.71 -12.29 15 18 N -0.38 -11.17 12.07 -49.56 -0.60 -11.77 15 19 O 0.10 2.35 11.20 71.67 0.80 3.15 15 20 H 0.09 0.38 8.14 -2.39 -0.02 0.36 15 21 H 0.11 0.36 8.14 -2.39 -0.02 0.34 15 22 H 0.11 0.27 8.14 -2.39 -0.02 0.25 15 23 H 0.20 2.72 8.06 -2.91 -0.02 2.69 15 24 H 0.10 2.82 8.14 -2.38 -0.02 2.80 15 25 H 0.06 2.22 8.14 -2.39 -0.02 2.21 15 26 H 0.41 13.18 8.46 -92.71 -0.78 12.40 15 27 H 0.05 2.40 8.14 -2.39 -0.02 2.38 15 28 H 0.04 2.14 8.14 -2.39 -0.02 2.12 15 29 H 0.27 14.84 8.31 -92.71 -0.77 14.07 15 Total: -1.00 -73.60 266.61 3.81 -69.79 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 0.39 Total: 7.76 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 3.54 Total: -2.05 kcal Atomic # 7 Polarization: -92.31 SS G_CDS: -2.90 Total: -95.22 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: 0.76 Total: -28.11 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -73.60 3.81 -69.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143188691.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.823 kcal (2) G-P(sol) polarization free energy of solvation -73.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds