Wall clock time and date at job start Sun Mar 29 2020 21:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00088 * 2 1 4 4 H 1.48502 * 109.46968 * 269.99650 * 3 2 1 5 5 H 1.48499 * 109.47153 * 29.99559 * 3 2 1 6 6 H 1.48501 * 109.47291 * 150.00069 * 3 2 1 7 7 C 1.37880 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00201 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99938 * 0.02562 * 7 2 1 10 10 C 1.50704 * 109.47202 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99921 * 359.97438 * 10 9 7 12 12 N 1.34772 * 120.00221 * 180.02562 * 10 9 7 13 13 C 1.40065 * 120.00138 * 184.19738 * 12 10 9 14 14 C 1.39115 * 120.49324 * 325.91864 * 13 12 10 15 15 C 1.38624 * 118.38871 * 180.24179 * 14 13 12 16 16 C 1.38160 * 119.28887 * 359.46323 * 15 14 13 17 17 N 1.31942 * 120.94369 * 0.29233 * 16 15 14 18 18 C 1.31964 * 121.75500 * 359.97438 * 17 16 15 19 19 F 1.35099 * 119.68942 * 179.97438 * 18 17 16 20 20 H 0.97000 * 119.99847 * 0.02562 * 1 2 3 21 21 H 1.08992 * 109.47575 * 59.99820 * 9 7 2 22 22 H 1.09001 * 109.47315 * 299.99385 * 9 7 2 23 23 H 0.96999 * 120.00263 * 4.19341 * 12 10 9 24 24 H 1.08000 * 120.80741 * 359.97438 * 14 13 12 25 25 H 1.08001 * 120.35343 * 179.73549 * 15 14 13 26 26 H 1.08002 * 119.52608 * 180.28132 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0018 11 8 3.4228 -3.4231 0.0022 12 7 1.7810 -4.9153 0.0015 13 6 2.6880 -5.9789 0.0915 14 6 3.9455 -5.8858 -0.4960 15 6 4.8067 -6.9663 -0.3845 16 6 4.3971 -8.0882 0.3102 17 7 3.1997 -8.1453 0.8612 18 6 2.3468 -7.1419 0.7749 19 9 1.1310 -7.2454 1.3546 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6240 -2.5568 0.8903 23 1 0.8295 -5.0933 -0.0610 24 1 4.2421 -4.9949 -1.0298 25 1 5.7889 -6.9299 -0.8321 26 1 5.0667 -8.9304 0.4033 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189630.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:27 Heat of formation + Delta-G solvation = -67.024404 kcal Electronic energy + Delta-G solvation = -14521.981447 eV Core-core repulsion = 11707.409491 eV Total energy + Delta-G solvation = -2814.571956 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.070 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.11178 -41.69351 -40.14856 -36.18782 -35.16111 -33.19723 -31.72291 -30.21508 -26.19155 -24.91550 -24.08572 -21.58736 -19.47768 -18.97239 -18.58087 -17.84261 -17.55352 -17.02789 -16.48709 -16.18583 -15.96267 -15.00920 -14.68786 -14.34314 -14.27272 -14.16578 -13.57874 -13.30233 -12.83778 -12.63755 -12.08135 -12.07116 -11.50042 -11.20905 -10.73913 -10.64578 -10.37891 -9.39452 -8.27984 -6.36075 -0.20898 0.04954 1.41105 1.41731 1.53749 1.62183 1.94098 2.41162 2.48994 2.60835 3.08262 3.43035 3.76799 3.99855 4.12638 4.36859 4.62363 4.87981 5.01748 5.05977 5.17414 5.19014 5.63775 5.71538 5.93738 6.37104 6.56711 6.76669 7.13219 7.34219 8.84082 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.052418 B = 0.006250 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.041477 B = 4478.840022 C = 4916.784604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.010 3.990 10 C 0.526 3.474 11 O -0.550 6.550 12 N -0.668 5.668 13 C 0.072 3.928 14 C -0.076 4.076 15 C -0.142 4.142 16 C 0.115 3.885 17 N -0.513 5.513 18 C 0.258 3.742 19 F -0.119 7.119 20 H 0.268 0.732 21 H 0.051 0.949 22 H 0.046 0.954 23 H 0.424 0.576 24 H 0.145 0.855 25 H 0.185 0.815 26 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.488 -14.076 -1.667 15.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.079 0.921 9 C -0.029 4.029 10 C 0.317 3.683 11 O -0.426 6.426 12 N -0.315 5.315 13 C -0.027 4.027 14 C -0.104 4.104 15 C -0.162 4.162 16 C -0.042 4.042 17 N -0.228 5.228 18 C 0.102 3.898 19 F -0.098 7.098 20 H 0.077 0.923 21 H 0.069 0.931 22 H 0.064 0.936 23 H 0.262 0.738 24 H 0.163 0.837 25 H 0.203 0.797 26 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 6.820 -14.457 -1.177 16.028 hybrid contribution -0.577 1.607 -0.243 1.725 sum 6.243 -12.850 -1.420 14.356 Atomic orbital electron populations 1.70028 1.07217 1.28237 1.50876 1.25794 0.95821 1.02828 0.94373 0.85425 0.78449 0.78451 0.78605 1.19565 1.20177 1.19738 1.21343 0.93862 0.90812 1.51603 0.92073 1.19118 0.94127 0.90158 0.99528 1.21785 0.90514 0.83480 0.72530 1.90508 1.18500 1.84757 1.48885 1.43662 1.10638 1.03928 1.73310 1.18800 0.94516 0.88856 1.00570 1.21918 0.91779 1.00428 0.96255 1.22557 1.02114 0.91987 0.99573 1.23238 0.89985 0.99095 0.91905 1.67068 1.05491 1.28203 1.22015 1.18002 0.83477 0.92049 0.96265 1.91575 1.39716 1.96338 1.82215 0.92319 0.93070 0.93562 0.73811 0.83693 0.79747 0.77101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.97 13.29 21.45 0.28 -52.69 15 2 C 0.01 0.60 5.46 84.66 0.46 1.07 15 3 Si 0.97 44.09 29.54 68.60 2.03 46.12 15 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 15 5 H -0.28 -12.12 7.11 99.48 0.71 -11.42 15 6 H -0.27 -12.39 7.11 99.48 0.71 -11.69 15 7 C -0.54 -30.49 8.92 25.60 0.23 -30.26 15 8 H 0.06 3.60 6.75 -2.91 -0.02 3.58 15 9 C 0.01 0.50 5.46 29.10 0.16 0.66 15 10 C 0.53 23.03 7.68 87.66 0.67 23.70 15 11 O -0.55 -26.64 12.90 -3.08 -0.04 -26.68 15 12 N -0.67 -23.30 5.24 -302.99 -1.59 -24.88 15 13 C 0.07 2.30 6.34 38.25 0.24 2.55 15 14 C -0.08 -2.21 8.81 22.57 0.20 -2.01 15 15 C -0.14 -2.80 10.10 22.34 0.23 -2.57 15 16 C 0.12 2.19 11.17 84.66 0.95 3.14 15 17 N -0.51 -13.93 10.37 -196.45 -2.04 -15.96 15 18 C 0.26 7.91 8.43 84.89 0.72 8.63 15 19 F -0.12 -3.73 16.99 44.97 0.76 -2.97 15 20 H 0.27 14.43 8.31 -92.71 -0.77 13.66 15 21 H 0.05 2.53 8.14 -2.39 -0.02 2.51 15 22 H 0.05 2.34 8.14 -2.39 -0.02 2.32 15 23 H 0.42 12.63 8.67 -92.71 -0.80 11.82 15 24 H 0.15 4.76 6.27 -2.91 -0.02 4.75 15 25 H 0.19 2.11 8.06 -2.91 -0.02 2.08 15 26 H 0.21 1.99 8.06 -2.91 -0.02 1.97 15 Total: -1.00 -67.43 244.43 3.69 -63.74 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 0.42 Total: 8.42 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 3.85 Total: 4.90 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -3.34 Total: -93.54 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.04 Total: -26.68 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.76 Total: -2.97 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -67.43 3.69 -63.74 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189630.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.280 kcal (2) G-P(sol) polarization free energy of solvation -67.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds