Wall clock time and date at job start Sun Mar 29 2020 21:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 N 1.33078 * 120.16170 * 281.68430 * 3 2 1 5 5 C 1.31784 * 120.00561 * 180.22812 * 4 3 2 6 6 C 1.38957 * 120.33979 * 359.78290 * 5 4 3 7 7 Cl 1.73598 * 119.83458 * 179.97438 * 6 5 4 8 8 N 1.32130 * 120.32232 * 359.97438 * 6 5 4 9 9 C 1.32819 * 119.99070 * 359.97438 * 8 6 5 10 10 N 1.38285 * 120.16765 * 179.97438 * 9 8 6 11 11 C 1.36872 * 120.00036 * 0.02562 * 10 9 8 12 12 H 1.08002 * 120.00363 * 359.97438 * 11 10 9 13 13 C 1.38862 * 119.99890 * 179.71922 * 11 10 9 14 14 N 1.31524 * 119.99699 * 0.27472 * 13 11 10 15 15 Si 1.86803 * 119.99997 * 180.27652 * 13 11 10 16 16 H 1.48498 * 109.46807 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47141 * 119.99984 * 15 13 11 18 18 H 1.48498 * 109.47018 * 240.00031 * 15 13 11 19 19 H 1.08003 * 119.82696 * 179.75366 * 5 4 3 20 20 H 0.97000 * 119.99619 * 180.02562 * 10 9 8 21 21 H 0.97005 * 119.99662 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2367 -0.2321 1.1268 5 6 4.5546 -0.2263 1.1242 6 6 5.2531 0.0175 -0.0520 7 17 6.9890 0.0227 -0.0403 8 7 4.6025 0.2454 -1.1793 9 6 3.2744 0.2416 -1.1917 10 7 2.5897 0.4802 -2.3692 11 6 3.2808 0.7206 -3.5260 12 1 4.3608 0.7243 -3.5191 13 6 2.5933 0.9544 -4.7096 14 7 1.2781 0.9503 -4.7180 15 14 3.5365 1.2748 -6.2899 16 1 4.9949 1.2267 -6.0143 17 1 3.1874 0.2376 -7.2936 18 1 3.1769 2.6154 -6.8178 19 1 5.0944 -0.4116 2.0411 20 1 1.6198 0.4773 -2.3754 21 1 0.7979 1.1140 -5.5448 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155531148.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:47 Heat of formation + Delta-G solvation = 53.403391 kcal Electronic energy + Delta-G solvation = -12255.981978 eV Core-core repulsion = 9771.428194 eV Total energy + Delta-G solvation = -2484.553784 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 224.016 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.79728 -38.15999 -37.58902 -37.38951 -34.93034 -34.00424 -31.07249 -27.35184 -26.23478 -24.15600 -20.74633 -20.22657 -19.09935 -18.17162 -16.72009 -16.36049 -16.32415 -15.52185 -15.28674 -14.48994 -14.01999 -13.75248 -13.75162 -13.71155 -12.88950 -12.86831 -12.66412 -12.36811 -12.20259 -12.09918 -11.50972 -10.76800 -10.12643 -9.24980 -8.85639 -6.08778 -0.46155 0.42214 0.72376 1.39801 1.44491 1.54063 1.56357 1.85532 2.08580 2.57845 2.68001 2.79964 3.11874 3.75799 3.84962 4.19509 4.36839 5.11983 5.25064 5.43937 6.16977 6.33860 6.53043 6.77602 6.87739 7.22386 8.27981 Molecular weight = 224.02amu Principal moments of inertia in cm(-1) A = 0.022435 B = 0.010575 C = 0.007205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.758931 B = 2647.091029 C = 3885.002092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.295 3.705 3 C -0.031 4.031 4 N -0.345 5.345 5 C -0.049 4.049 6 C 0.227 3.773 7 Cl -0.005 7.005 8 N -0.512 5.512 9 C 0.325 3.675 10 N -0.490 5.490 11 C -0.307 4.307 12 H 0.126 0.874 13 C -0.012 4.012 14 N -0.894 5.894 15 Si 1.012 2.988 16 H -0.252 1.252 17 H -0.270 1.270 18 H -0.270 1.270 19 H 0.209 0.791 20 H 0.407 0.593 21 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.751 -0.779 3.913 10.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.018 4.018 3 C -0.181 4.181 4 N -0.059 5.059 5 C -0.221 4.221 6 C 0.043 3.957 7 Cl 0.024 6.976 8 N -0.237 5.237 9 C 0.076 3.924 10 N -0.088 5.088 11 C -0.438 4.438 12 H 0.144 0.856 13 C -0.217 4.217 14 N -0.527 5.527 15 Si 0.833 3.167 16 H -0.175 1.175 17 H -0.195 1.195 18 H -0.195 1.195 19 H 0.225 0.775 20 H 0.244 0.756 21 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.820 -0.660 3.312 8.518 hybrid contribution 0.150 0.156 -0.806 0.835 sum 7.969 -0.504 2.506 8.369 Atomic orbital electron populations 1.81140 1.12043 1.12876 1.07872 1.24914 0.91628 0.92288 0.92978 1.15776 0.85791 1.25329 0.91184 1.67869 1.09220 1.03914 1.24923 1.23173 0.88201 1.12175 0.98591 1.23099 0.88538 0.93336 0.90690 1.98388 1.05001 1.95925 1.98332 1.67154 1.06483 1.21121 1.28988 1.18346 0.87770 1.00023 0.86258 1.41250 1.08763 1.53575 1.05164 1.20556 0.94616 1.43945 0.84647 0.85640 1.26634 0.96594 0.94871 1.03631 1.69750 1.08137 1.43217 1.31584 0.84561 0.78836 0.78320 0.74979 1.17485 1.19527 1.19529 0.77455 0.75573 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -20.32 18.54 19.00 0.35 -19.97 14 2 C 0.30 12.67 14.32 88.33 1.26 13.94 14 3 C -0.03 -1.27 6.62 40.78 0.27 -1.00 14 4 N -0.34 -12.59 10.42 -187.59 -1.95 -14.54 14 5 C -0.05 -1.48 11.00 84.87 0.93 -0.54 14 6 C 0.23 7.51 7.29 84.82 0.62 8.12 14 7 Cl 0.00 -0.12 29.12 -2.72 -0.08 -0.20 14 8 N -0.51 -20.91 9.23 -182.61 -1.69 -22.60 14 9 C 0.33 14.25 7.43 133.54 0.99 15.24 14 10 N -0.49 -23.38 5.33 -188.30 -1.00 -24.38 14 11 C -0.31 -14.80 9.71 84.06 0.82 -13.99 14 12 H 0.13 5.96 7.09 -2.91 -0.02 5.94 14 13 C -0.01 -0.57 5.50 84.89 0.47 -0.10 14 14 N -0.89 -44.40 13.05 21.65 0.28 -44.12 14 15 Si 1.01 36.63 29.55 68.60 2.03 38.65 14 16 H -0.25 -8.73 7.11 99.48 0.71 -8.02 14 17 H -0.27 -9.56 7.11 99.48 0.71 -8.85 14 18 H -0.27 -9.56 7.11 99.48 0.71 -8.85 14 19 H 0.21 4.38 8.06 -2.91 -0.02 4.36 14 20 H 0.41 20.22 6.73 -92.71 -0.62 19.59 14 21 H 0.29 13.41 8.31 -92.70 -0.77 12.64 14 Total: -1.00 -52.68 228.62 3.98 -48.70 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.68 Total: 16.80 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: 5.36 Total: 21.66 kcal Atomic # 7 Polarization: -121.60 SS G_CDS: -4.01 Total: -125.61 kcal Atomic # 14 Polarization: 36.63 SS G_CDS: 2.03 Total: 38.65 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -0.08 Total: -0.20 kcal Total: -52.68 3.98 -48.70 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155531148.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.099 kcal (2) G-P(sol) polarization free energy of solvation -52.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds