Wall clock time and date at job start Sun Mar 29 2020 22:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81405 * 103.00000 * 2 1 4 4 C 1.50698 * 109.47035 * 180.02562 * 3 2 1 5 5 C 1.38874 * 120.33093 * 89.99976 * 4 3 2 6 6 C 1.38315 * 118.50800 * 180.02562 * 5 4 3 7 7 C 1.39228 * 119.08864 * 359.97438 * 6 5 4 8 8 N 1.38832 * 119.71083 * 179.97438 * 7 6 5 9 9 C 1.36914 * 120.00211 * 0.02562 * 8 7 6 10 10 H 1.08001 * 119.99806 * 359.97438 * 9 8 7 11 11 C 1.38812 * 119.99801 * 179.97438 * 9 8 7 12 12 N 1.31563 * 120.00532 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99930 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47183 * 59.99093 * 13 11 9 15 15 H 1.48496 * 109.47609 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46982 * 299.99901 * 13 11 9 17 17 N 1.32496 * 120.57661 * 359.97438 * 7 6 5 18 18 C 1.31898 * 121.61982 * 359.97438 * 17 7 6 19 19 H 1.09000 * 109.47390 * 179.97438 * 1 2 3 20 20 H 1.08995 * 109.47176 * 300.00081 * 1 2 3 21 21 H 1.09000 * 109.47311 * 60.00135 * 1 2 3 22 22 H 1.08996 * 109.46741 * 59.99807 * 3 2 1 23 23 H 1.08994 * 109.46822 * 299.99884 * 3 2 1 24 24 H 1.08001 * 120.74845 * 359.97438 * 5 4 3 25 25 H 1.07998 * 120.45711 * 179.72765 * 6 5 4 26 26 H 0.97000 * 119.99780 * 179.97438 * 8 7 6 27 27 H 0.97002 * 120.00446 * 180.02562 * 12 11 9 28 28 H 1.07996 * 119.56307 * 180.02562 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7194 1.9374 -0.0006 5 6 4.4158 2.0165 -1.1996 6 6 5.7895 2.1718 -1.1562 7 6 6.4238 2.2435 0.0811 8 7 7.8021 2.3988 0.1398 9 6 8.5316 2.4811 -1.0159 10 1 8.0348 2.4249 -1.9732 11 6 9.9097 2.6368 -0.9572 12 7 10.5149 2.7058 0.2089 13 14 10.9051 2.7485 -2.5340 14 1 10.4454 3.9162 -3.3279 15 1 12.3432 2.9105 -2.2013 16 1 10.7178 1.5066 -3.3265 17 7 5.7234 2.1650 1.2031 18 6 4.4127 2.0179 1.1913 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 1.8031 2.2371 0.8900 23 1 1.8031 2.2371 -0.8900 24 1 3.8964 1.9573 -2.1447 25 1 6.3627 2.2324 -2.0695 26 1 8.2483 2.4496 0.9996 27 1 11.4779 2.8150 0.2500 28 1 3.8748 1.9580 2.1259 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534424.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:41 Heat of formation + Delta-G solvation = 13.699108 kcal Electronic energy + Delta-G solvation = -12470.854946 eV Core-core repulsion = 10225.996600 eV Total energy + Delta-G solvation = -2244.858346 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.81609 -37.27283 -34.39614 -33.23382 -31.66002 -29.69486 -27.86819 -25.95515 -24.28623 -22.37756 -19.73581 -18.56468 -17.29968 -17.04745 -16.37601 -15.86987 -15.34933 -15.17803 -14.90634 -14.51439 -14.49160 -13.83515 -13.59516 -13.39934 -13.32853 -12.98523 -12.61808 -12.13378 -12.08585 -11.93290 -10.94903 -10.53865 -10.42471 -10.06513 -8.68165 -8.57014 -8.53054 -5.81912 0.33976 0.75609 1.23690 1.41795 1.52753 1.53836 1.90565 2.23583 2.91101 3.12643 3.46148 3.95382 4.05540 4.19609 4.36498 4.44837 4.46144 4.62734 4.72968 4.92966 4.97369 5.14655 5.27685 5.40783 5.65952 5.77353 6.18650 6.67874 7.11749 7.39728 7.82169 8.65337 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.064348 B = 0.005367 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.028624 B = 5215.463907 C = 5467.035725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.340 6.340 3 C 0.011 3.989 4 C -0.250 4.250 5 C -0.006 4.006 6 C -0.276 4.276 7 C 0.351 3.649 8 N -0.558 5.558 9 C -0.322 4.322 10 H 0.112 0.888 11 C -0.027 4.027 12 N -0.926 5.926 13 Si 1.006 2.994 14 H -0.262 1.262 15 H -0.280 1.280 16 H -0.264 1.264 17 N -0.602 5.602 18 C 0.170 3.830 19 H 0.105 0.895 20 H 0.086 0.914 21 H 0.086 0.914 22 H 0.098 0.902 23 H 0.096 0.904 24 H 0.146 0.854 25 H 0.122 0.878 26 H 0.391 0.609 27 H 0.278 0.722 28 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.831 -1.393 -3.277 16.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 S -0.113 6.113 3 C -0.137 4.137 4 C -0.260 4.260 5 C -0.032 4.032 6 C -0.303 4.303 7 C 0.109 3.891 8 N -0.165 5.165 9 C -0.452 4.452 10 H 0.129 0.871 11 C -0.227 4.227 12 N -0.564 5.564 13 Si 0.828 3.172 14 H -0.186 1.186 15 H -0.205 1.205 16 H -0.188 1.188 17 N -0.323 5.323 18 C 0.006 3.994 19 H 0.123 0.877 20 H 0.105 0.895 21 H 0.105 0.895 22 H 0.117 0.883 23 H 0.115 0.885 24 H 0.164 0.836 25 H 0.140 0.860 26 H 0.224 0.776 27 H 0.087 0.913 28 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -14.268 -2.176 -2.632 14.671 hybrid contribution -0.080 0.965 -0.702 1.196 sum -14.347 -1.211 -3.334 14.779 Atomic orbital electron populations 1.23378 0.91432 1.07042 1.05793 1.87617 1.10340 1.15214 1.98177 1.21829 0.93861 0.91929 1.06074 1.19655 0.95131 1.17259 0.93916 1.21232 0.92262 0.91272 0.98460 1.21253 0.95842 1.16433 0.96814 1.18744 0.85520 0.94504 0.90336 1.40888 1.01823 1.64777 1.09009 1.20058 0.90022 1.48128 0.86988 0.87057 1.26332 0.97739 0.96534 1.02111 1.69814 1.11411 1.48869 1.26314 0.84778 0.76512 0.79487 0.76387 1.18649 1.20513 1.18840 1.67130 1.09846 1.25369 1.29933 1.22450 0.88004 0.90798 0.98153 0.87655 0.89460 0.89507 0.88349 0.88524 0.83646 0.85969 0.77600 0.91309 0.81940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 10.76 113.37 1.22 -0.45 15 2 S -0.34 -8.74 22.36 -56.49 -1.26 -10.00 15 3 C 0.01 0.25 6.09 71.24 0.43 0.69 15 4 C -0.25 -8.20 5.16 -19.74 -0.10 -8.31 15 5 C -0.01 -0.20 9.85 22.44 0.22 0.02 15 6 C -0.28 -11.91 9.33 22.53 0.21 -11.70 15 7 C 0.35 17.19 7.62 133.12 1.01 18.20 15 8 N -0.56 -30.03 5.44 -189.20 -1.03 -31.06 15 9 C -0.32 -17.14 9.54 84.04 0.80 -16.34 15 10 H 0.11 5.54 5.65 -2.91 -0.02 5.52 15 11 C -0.03 -1.42 5.50 84.87 0.47 -0.95 15 12 N -0.93 -51.60 13.05 21.65 0.28 -51.32 15 13 Si 1.01 40.68 29.55 68.60 2.03 42.71 15 14 H -0.26 -10.09 7.11 99.48 0.71 -9.38 15 15 H -0.28 -11.14 7.11 99.48 0.71 -10.44 15 16 H -0.26 -10.24 7.11 99.48 0.71 -9.54 15 17 N -0.60 -27.79 10.39 -193.23 -2.01 -29.80 15 18 C 0.17 6.32 10.85 84.66 0.92 7.24 15 19 H 0.10 1.43 8.14 -2.39 -0.02 1.41 15 20 H 0.09 1.12 8.14 -2.39 -0.02 1.10 15 21 H 0.09 1.11 8.14 -2.39 -0.02 1.09 15 22 H 0.10 1.98 8.09 -2.39 -0.02 1.96 15 23 H 0.10 1.95 8.09 -2.39 -0.02 1.93 15 24 H 0.15 4.11 8.06 -2.91 -0.02 4.08 15 25 H 0.12 5.21 5.94 -2.91 -0.02 5.19 15 26 H 0.39 22.21 8.01 -92.71 -0.74 21.47 15 27 H 0.28 14.52 8.31 -92.71 -0.77 13.75 15 28 H 0.16 4.97 8.06 -2.91 -0.02 4.95 15 Total: -1.00 -61.57 261.46 3.62 -57.95 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: 0.43 Total: 33.11 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: 5.18 Total: -11.59 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -2.76 Total: -112.17 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.26 Total: -10.00 kcal Total: -61.57 3.62 -57.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534424.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.652 kcal (2) G-P(sol) polarization free energy of solvation -61.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds