Wall clock time and date at job start Sun Mar 29 2020 22:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.76197 * 103.00019 * 2 1 4 4 C 1.39170 * 119.66209 * 180.02562 * 3 2 1 5 5 C 1.38479 * 119.26724 * 180.02562 * 4 3 2 6 6 C 1.38589 * 118.60008 * 359.97438 * 5 4 3 7 7 C 1.39061 * 119.26396 * 0.02562 * 6 5 4 8 8 N 1.38818 * 119.66146 * 180.02562 * 7 6 5 9 9 C 1.46502 * 120.00125 * 185.00044 * 8 7 6 10 10 C 1.36915 * 120.00033 * 4.98855 * 8 7 6 11 11 H 1.08003 * 119.99954 * 24.36359 * 10 8 7 12 12 C 1.38807 * 120.00090 * 204.35654 * 10 8 7 13 13 N 1.31566 * 119.99896 * 10.45064 * 12 10 8 14 14 Si 1.86803 * 119.99854 * 190.44369 * 12 10 8 15 15 H 1.48491 * 109.47293 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46949 * 120.00776 * 14 12 10 17 17 H 1.48505 * 109.47013 * 240.00396 * 14 12 10 18 18 N 1.32464 * 119.66272 * 0.29607 * 3 2 1 19 19 H 1.09009 * 109.47161 * 179.97438 * 1 2 3 20 20 H 1.08993 * 109.47658 * 299.99985 * 1 2 3 21 21 H 1.09005 * 109.47255 * 60.00511 * 1 2 3 22 22 H 1.07997 * 120.36813 * 0.03700 * 4 3 2 23 23 H 1.07998 * 120.70203 * 179.97438 * 5 4 3 24 24 H 1.07995 * 120.36902 * 180.02562 * 6 5 4 25 25 H 1.08989 * 109.47359 * 93.50064 * 9 8 7 26 26 H 1.09007 * 109.46853 * 213.50602 * 9 8 7 27 27 H 1.09007 * 109.46572 * 333.49977 * 9 8 7 28 28 H 0.97007 * 120.00148 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5436 2.1158 -0.0005 5 6 3.8458 3.4673 0.0000 6 6 2.8031 4.3802 0.0005 7 6 1.4925 3.9153 0.0010 8 7 0.4418 4.8225 0.0010 9 6 -0.9386 4.3447 0.1121 10 6 0.6956 6.1640 -0.1026 11 1 1.6095 6.5065 -0.5650 12 6 -0.2218 7.0837 0.3866 13 7 -1.2295 6.6769 1.1282 14 14 -0.0254 8.8990 -0.0079 15 1 1.1797 9.0943 -0.8533 16 1 -1.2255 9.3794 -0.7388 17 1 0.1255 9.6664 1.2546 18 7 1.2363 2.6145 0.0059 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8901 22 1 4.3338 1.3797 -0.0016 23 1 4.8724 3.8027 0.0000 24 1 3.0062 5.4409 0.0005 25 1 -1.2430 4.3533 1.1586 26 1 -1.5962 4.9966 -0.4630 27 1 -1.0037 3.3284 -0.2768 28 1 -1.8705 7.3197 1.4704 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166799330.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:21 Heat of formation + Delta-G solvation = 46.570681 kcal Electronic energy + Delta-G solvation = -13102.113475 eV Core-core repulsion = 10858.680547 eV Total energy + Delta-G solvation = -2243.432928 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.02579 -35.90612 -32.13954 -31.40785 -28.98489 -28.44681 -26.60020 -24.12248 -22.49350 -20.88084 -17.99600 -16.69415 -15.63822 -15.24030 -14.88330 -14.24740 -13.88643 -13.64884 -13.26113 -13.13888 -12.62060 -12.23972 -11.87530 -11.54779 -11.26309 -11.04516 -10.84693 -10.50110 -10.42570 -10.07614 -9.64753 -9.08993 -8.92654 -8.46381 -7.47511 -6.69455 -6.42983 -3.93917 2.10660 2.15252 2.44648 2.79075 3.07978 3.12043 3.16305 3.93350 4.62739 4.75956 5.09420 5.46060 5.59826 5.64142 6.11371 6.14485 6.25637 6.31187 6.52443 6.66549 6.91336 6.97886 7.21994 7.25474 7.33862 7.53593 7.90437 8.36357 8.83013 9.15405 9.61452 10.50537 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.043498 B = 0.007949 C = 0.006838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.560447 B = 3521.829028 C = 4094.005501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.123 6.123 3 C 0.184 3.816 4 C -0.275 4.275 5 C -0.024 4.024 6 C -0.253 4.253 7 C 0.379 3.621 8 N -0.420 5.420 9 C 0.128 3.872 10 C -0.309 4.309 11 H 0.099 0.901 12 C 0.032 3.968 13 N -0.868 5.868 14 Si 0.931 3.069 15 H -0.266 1.266 16 H -0.278 1.278 17 H -0.279 1.279 18 N -0.572 5.572 19 H 0.091 0.909 20 H 0.083 0.917 21 H 0.082 0.918 22 H 0.113 0.887 23 H 0.117 0.883 24 H 0.126 0.874 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.040 0.960 28 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.911 -5.939 -1.843 6.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S 0.114 5.886 3 C -0.070 4.070 4 C -0.308 4.308 5 C -0.051 4.051 6 C -0.282 4.282 7 C 0.135 3.865 8 N -0.109 5.109 9 C -0.015 4.015 10 C -0.438 4.438 11 H 0.117 0.883 12 C -0.174 4.174 13 N -0.504 5.504 14 Si 0.757 3.243 15 H -0.191 1.191 16 H -0.204 1.204 17 H -0.205 1.205 18 N -0.297 5.297 19 H 0.110 0.890 20 H 0.102 0.898 21 H 0.101 0.899 22 H 0.131 0.869 23 H 0.135 0.865 24 H 0.144 0.856 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.186 -6.843 -1.726 7.388 hybrid contribution -0.045 2.357 -0.049 2.358 sum 2.141 -4.486 -1.775 5.278 Atomic orbital electron populations 1.23278 0.94230 1.04771 1.06619 1.85023 1.07486 1.03018 1.93069 1.22109 0.91722 0.95638 0.97485 1.20701 0.94489 0.96053 1.19518 1.20902 0.97952 0.92283 0.93951 1.21163 0.91665 1.00301 1.15032 1.18338 0.87680 0.86347 0.94131 1.42475 1.02787 1.03652 1.61964 1.21346 0.82395 0.96132 1.01637 1.19683 1.07764 0.79563 1.36809 0.88342 1.25445 0.96177 1.00803 0.94973 1.70102 1.14046 1.35432 1.30779 0.85783 0.78672 0.81384 0.78438 1.19056 1.20411 1.20453 1.67290 1.34449 1.01186 1.26809 0.88995 0.89752 0.89902 0.86895 0.86502 0.85634 0.92647 0.92387 0.94183 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 10.01 101.05 1.01 -0.77 15 2 S -0.12 -2.07 22.55 -107.50 -2.42 -4.50 15 3 C 0.18 3.83 7.00 -16.93 -0.12 3.71 15 4 C -0.28 -5.36 9.84 -39.15 -0.39 -5.75 15 5 C -0.02 -0.47 10.16 -39.36 -0.40 -0.87 15 6 C -0.25 -5.65 9.26 -39.15 -0.36 -6.01 15 7 C 0.38 9.29 7.33 -155.07 -1.14 8.16 15 8 N -0.42 -10.82 3.11 -122.46 -0.38 -11.21 15 9 C 0.13 3.13 8.77 59.85 0.53 3.65 15 10 C -0.31 -8.00 8.89 -15.07 -0.13 -8.13 15 11 H 0.10 2.45 6.34 -52.48 -0.33 2.12 15 12 C 0.03 0.80 5.14 -17.46 -0.09 0.71 15 13 N -0.87 -22.75 10.66 55.49 0.59 -22.16 15 14 Si 0.93 19.44 29.57 -169.99 -5.03 14.41 15 15 H -0.27 -5.42 7.11 56.52 0.40 -5.02 15 16 H -0.28 -5.78 7.11 56.52 0.40 -5.38 15 17 H -0.28 -5.83 7.11 56.52 0.40 -5.42 15 18 N -0.57 -13.21 8.08 -11.28 -0.09 -13.30 15 19 H 0.09 1.06 8.14 -51.92 -0.42 0.64 15 20 H 0.08 1.34 8.14 -51.93 -0.42 0.92 15 21 H 0.08 1.29 8.14 -51.92 -0.42 0.87 15 22 H 0.11 1.93 8.06 -52.49 -0.42 1.50 15 23 H 0.12 1.84 8.06 -52.49 -0.42 1.42 15 24 H 0.13 2.75 6.28 -52.49 -0.33 2.42 15 25 H 0.06 1.42 7.41 -51.94 -0.39 1.04 15 26 H 0.06 1.43 7.25 -51.93 -0.38 1.06 15 27 H 0.04 0.91 7.19 -51.92 -0.37 0.53 15 28 H 0.27 6.66 8.31 -40.82 -0.34 6.32 15 LS Contribution 255.02 15.07 3.84 3.84 Total: -1.00 -27.57 255.02 -7.62 -35.19 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -3.05 Total: 3.01 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -1.09 Total: -5.30 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 0.12 Total: -46.66 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.41 kcal Atomic # 16 Polarization: -2.07 SS G_CDS: -2.42 Total: -4.50 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -27.57 -7.62 -35.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799330.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.761 kcal (2) G-P(sol) polarization free energy of solvation -27.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds