Wall clock time and date at job start Sun Mar 29 2020 22:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.76197 * 103.00019 * 2 1 4 4 C 1.39170 * 119.66209 * 180.02562 * 3 2 1 5 5 C 1.38479 * 119.26724 * 180.02562 * 4 3 2 6 6 C 1.38589 * 118.60008 * 359.97438 * 5 4 3 7 7 C 1.39061 * 119.26396 * 0.02562 * 6 5 4 8 8 N 1.38818 * 119.66146 * 180.02562 * 7 6 5 9 9 C 1.46502 * 120.00125 * 185.00044 * 8 7 6 10 10 C 1.36915 * 120.00033 * 4.98855 * 8 7 6 11 11 H 1.08003 * 119.99954 * 24.36359 * 10 8 7 12 12 C 1.38807 * 120.00090 * 204.35654 * 10 8 7 13 13 N 1.31566 * 119.99896 * 10.45064 * 12 10 8 14 14 Si 1.86803 * 119.99854 * 190.44369 * 12 10 8 15 15 H 1.48491 * 109.47293 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46949 * 120.00776 * 14 12 10 17 17 H 1.48505 * 109.47013 * 240.00396 * 14 12 10 18 18 N 1.32464 * 119.66272 * 0.29607 * 3 2 1 19 19 H 1.09009 * 109.47161 * 179.97438 * 1 2 3 20 20 H 1.08993 * 109.47658 * 299.99985 * 1 2 3 21 21 H 1.09005 * 109.47255 * 60.00511 * 1 2 3 22 22 H 1.07997 * 120.36813 * 0.03700 * 4 3 2 23 23 H 1.07998 * 120.70203 * 179.97438 * 5 4 3 24 24 H 1.07995 * 120.36902 * 180.02562 * 6 5 4 25 25 H 1.08989 * 109.47359 * 93.50064 * 9 8 7 26 26 H 1.09007 * 109.46853 * 213.50602 * 9 8 7 27 27 H 1.09007 * 109.46572 * 333.49977 * 9 8 7 28 28 H 0.97007 * 120.00148 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5436 2.1158 -0.0005 5 6 3.8458 3.4673 0.0000 6 6 2.8031 4.3802 0.0005 7 6 1.4925 3.9153 0.0010 8 7 0.4418 4.8225 0.0010 9 6 -0.9386 4.3447 0.1121 10 6 0.6956 6.1640 -0.1026 11 1 1.6095 6.5065 -0.5650 12 6 -0.2218 7.0837 0.3866 13 7 -1.2295 6.6769 1.1282 14 14 -0.0254 8.8990 -0.0079 15 1 1.1797 9.0943 -0.8533 16 1 -1.2255 9.3794 -0.7388 17 1 0.1255 9.6664 1.2546 18 7 1.2363 2.6145 0.0059 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8901 22 1 4.3338 1.3797 -0.0016 23 1 4.8724 3.8027 0.0000 24 1 3.0062 5.4409 0.0005 25 1 -1.2430 4.3533 1.1586 26 1 -1.5962 4.9966 -0.4630 27 1 -1.0037 3.3284 -0.2768 28 1 -1.8705 7.3197 1.4704 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799330.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:20 Heat of formation + Delta-G solvation = 31.965907 kcal Electronic energy + Delta-G solvation = -13102.746786 eV Core-core repulsion = 10858.680547 eV Total energy + Delta-G solvation = -2244.066238 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.74419 -37.69727 -33.96141 -33.08452 -30.72739 -29.67790 -28.48179 -25.94354 -24.16238 -22.62091 -19.71843 -18.48599 -17.26532 -16.92442 -16.55342 -15.89121 -15.63031 -15.23012 -14.82904 -14.59037 -14.13459 -13.90847 -13.39222 -13.21560 -13.00528 -12.70454 -12.61776 -12.28543 -12.05619 -11.49906 -11.45010 -10.76613 -10.67347 -10.16263 -9.13046 -8.40337 -8.16759 -5.87441 0.48329 0.69661 0.79249 1.39422 1.43523 1.44725 1.55822 2.21709 2.84109 2.97987 3.29112 4.05722 4.34943 4.38536 4.48663 4.58993 4.64566 4.78199 4.91507 4.94176 4.98402 5.25827 5.33477 5.35152 5.64264 5.83812 6.12522 6.53733 7.03873 7.31377 7.79293 8.66675 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.043498 B = 0.007949 C = 0.006838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.560447 B = 3521.829028 C = 4094.005501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.089 6.089 3 C 0.154 3.846 4 C -0.265 4.265 5 C -0.013 4.013 6 C -0.276 4.276 7 C 0.360 3.640 8 N -0.452 5.452 9 C 0.151 3.849 10 C -0.329 4.329 11 H 0.100 0.900 12 C -0.014 4.014 13 N -0.905 5.905 14 Si 1.000 3.000 15 H -0.258 1.258 16 H -0.276 1.276 17 H -0.278 1.278 18 N -0.586 5.586 19 H 0.130 0.870 20 H 0.071 0.929 21 H 0.073 0.927 22 H 0.145 0.855 23 H 0.160 0.840 24 H 0.122 0.878 25 H 0.031 0.969 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.592 -7.023 -2.272 8.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S 0.149 5.851 3 C -0.098 4.098 4 C -0.296 4.296 5 C -0.039 4.039 6 C -0.305 4.305 7 C 0.118 3.882 8 N -0.144 5.144 9 C 0.007 3.993 10 C -0.458 4.458 11 H 0.117 0.883 12 C -0.215 4.215 13 N -0.542 5.542 14 Si 0.823 3.177 15 H -0.181 1.181 16 H -0.201 1.201 17 H -0.204 1.204 18 N -0.312 5.312 19 H 0.149 0.851 20 H 0.090 0.910 21 H 0.092 0.908 22 H 0.163 0.837 23 H 0.177 0.823 24 H 0.140 0.860 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.915 -7.984 -2.164 9.152 hybrid contribution -0.406 2.386 0.081 2.421 sum 3.509 -5.598 -2.083 6.928 Atomic orbital electron populations 1.23379 0.92955 1.06955 1.05531 1.84851 1.08809 0.99145 1.92343 1.22932 0.92411 0.97535 0.96954 1.21232 0.94883 0.96911 1.16617 1.21377 0.99243 0.91819 0.91496 1.21331 0.91768 1.00948 1.16430 1.18782 0.88355 0.87037 0.94022 1.42563 1.03057 1.03942 1.64822 1.21007 0.82419 0.96050 0.99790 1.19919 1.08262 0.80165 1.37422 0.88289 1.26311 0.95778 1.04795 0.94633 1.70217 1.15048 1.36662 1.32262 0.84764 0.78791 0.76061 0.78128 1.18116 1.20150 1.20360 1.67347 1.35690 1.01026 1.27137 0.85149 0.91022 0.90793 0.83676 0.82290 0.85961 0.94999 0.93774 0.93369 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.30 10.01 113.37 1.14 -2.17 15 2 S -0.09 -2.75 22.55 -56.49 -1.27 -4.02 15 3 C 0.15 6.09 7.00 84.82 0.59 6.68 15 4 C -0.27 -9.46 9.84 22.55 0.22 -9.24 15 5 C -0.01 -0.46 10.16 22.41 0.23 -0.23 15 6 C -0.28 -12.16 9.26 22.55 0.21 -11.95 15 7 C 0.36 17.80 7.33 133.05 0.98 18.78 15 8 N -0.45 -23.98 3.11 -541.35 -1.69 -25.66 15 9 C 0.15 7.69 8.77 127.77 1.12 8.82 15 10 C -0.33 -17.48 8.89 84.04 0.75 -16.74 15 11 H 0.10 5.04 6.34 -2.91 -0.02 5.02 15 12 C -0.01 -0.70 5.14 84.87 0.44 -0.27 15 13 N -0.90 -49.09 10.66 21.65 0.23 -48.86 15 14 Si 1.00 40.45 29.57 68.60 2.03 42.47 15 15 H -0.26 -9.89 7.11 99.48 0.71 -9.19 15 16 H -0.28 -10.94 7.11 99.48 0.71 -10.23 15 17 H -0.28 -11.09 7.11 99.48 0.71 -10.38 15 18 N -0.59 -26.88 8.08 -189.60 -1.53 -28.41 15 19 H 0.13 2.58 8.14 -2.39 -0.02 2.56 15 20 H 0.07 2.19 8.14 -2.39 -0.02 2.18 15 21 H 0.07 2.21 8.14 -2.39 -0.02 2.19 15 22 H 0.15 4.24 8.06 -2.91 -0.02 4.22 15 23 H 0.16 4.29 8.06 -2.91 -0.02 4.27 15 24 H 0.12 5.37 6.28 -2.91 -0.02 5.35 15 25 H 0.03 1.72 7.41 -2.39 -0.02 1.70 15 26 H 0.04 2.29 7.25 -2.38 -0.02 2.27 15 27 H 0.05 2.27 7.19 -2.38 -0.02 2.25 15 28 H 0.27 13.80 8.31 -92.70 -0.77 13.03 15 Total: -1.00 -60.15 255.02 4.59 -55.56 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 1.16 Total: 15.24 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 5.67 Total: -6.32 kcal Atomic # 7 Polarization: -99.95 SS G_CDS: -2.99 Total: -102.93 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.47 kcal Atomic # 16 Polarization: -2.75 SS G_CDS: -1.27 Total: -4.02 kcal Total: -60.15 4.59 -55.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799330.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.521 kcal (2) G-P(sol) polarization free energy of solvation -60.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds