Wall clock time and date at job start Sun Mar 29 2020 22:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.76203 * 103.00337 * 2 1 4 4 C 1.39061 * 120.52834 * 359.97438 * 3 2 1 5 5 C 1.38717 * 118.43622 * 179.97438 * 4 3 2 6 6 C 1.38211 * 119.41429 * 359.97438 * 5 4 3 7 7 N 1.31915 * 121.03757 * 0.02562 * 6 5 4 8 8 C 1.32410 * 121.70375 * 0.02562 * 7 6 5 9 9 N 1.38854 * 119.76561 * 179.97438 * 8 7 6 10 10 C 1.46497 * 120.00199 * 267.16518 * 9 8 7 11 11 C 1.36874 * 119.99674 * 87.16748 * 9 8 7 12 12 H 1.07998 * 120.00273 * 21.58334 * 11 9 8 13 13 C 1.38755 * 119.99946 * 201.57899 * 11 9 8 14 14 N 1.31613 * 119.99586 * 9.21262 * 13 11 9 15 15 Si 1.86799 * 120.00115 * 189.20543 * 13 11 9 16 16 H 1.48497 * 109.46785 * 60.00608 * 15 13 11 17 17 H 1.48497 * 109.46703 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47420 * 300.00406 * 15 13 11 19 19 H 1.09004 * 109.47353 * 60.00093 * 1 2 3 20 20 H 1.08993 * 109.47359 * 179.97438 * 1 2 3 21 21 H 1.09008 * 109.47175 * 300.00199 * 1 2 3 22 22 H 1.08000 * 120.78402 * 359.95865 * 4 3 2 23 23 H 1.08001 * 120.29437 * 179.97438 * 5 4 3 24 24 H 1.08003 * 119.47807 * 180.02562 * 6 5 4 25 25 H 1.08997 * 109.46800 * 96.05467 * 10 9 8 26 26 H 1.08993 * 109.47098 * 216.05202 * 10 9 8 27 27 H 1.08997 * 109.46812 * 336.05914 * 10 9 8 28 28 H 0.96999 * 119.99642 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.2022 2.6746 -0.0005 5 6 1.5635 4.0139 0.0000 6 6 2.9026 4.3558 0.0016 7 7 3.8412 3.4288 0.0021 8 6 3.5447 2.1383 0.0006 9 7 4.5651 1.1966 0.0007 10 6 5.0620 0.6549 -1.2665 11 6 5.1065 0.7744 1.1847 12 1 4.5478 0.8815 2.1027 13 6 6.3733 0.2086 1.2057 14 7 7.1265 0.2415 0.1269 15 14 7.0098 -0.5993 2.7650 16 1 6.1109 -1.7185 3.1449 17 1 8.3793 -1.1223 2.5279 18 1 7.0455 0.4011 3.8618 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 0.1624 2.3827 -0.0016 23 1 0.8050 4.7828 -0.0008 24 1 3.1851 5.3982 0.0025 25 1 5.9483 1.2089 -1.5757 26 1 5.3178 -0.3966 -1.1367 27 1 4.2897 0.7495 -2.0298 28 1 8.0123 -0.1537 0.1416 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166799577.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:23 Heat of formation + Delta-G solvation = 69.860512 kcal Electronic energy + Delta-G solvation = -13243.554740 eV Core-core repulsion = 11001.131735 eV Total energy + Delta-G solvation = -2242.423005 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.33543 -35.47276 -32.07193 -31.52940 -29.17506 -28.58709 -25.96013 -23.83496 -23.01447 -20.94456 -17.39663 -16.87478 -16.00837 -15.77819 -14.78235 -14.05717 -13.81033 -13.59911 -13.33708 -13.06873 -12.47915 -12.30003 -11.99142 -11.81843 -10.98607 -10.87693 -10.57093 -10.18675 -10.03831 -9.77055 -9.63000 -8.92950 -8.71466 -8.53694 -7.03704 -6.79518 -5.78683 -3.30716 1.64812 1.84086 2.01542 2.98298 3.40455 3.43622 3.45813 4.35561 4.45114 4.89503 5.18359 5.22541 5.24035 5.35064 5.49018 5.57324 5.79665 5.96496 6.09571 6.42772 6.57545 6.74007 7.09775 7.39889 7.71725 7.78776 8.32900 8.85071 9.15344 9.80415 10.18336 11.24983 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.028484 B = 0.010609 C = 0.009034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.775126 B = 2638.539731 C = 3098.689954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 S -0.049 6.049 3 C -0.156 4.156 4 C -0.095 4.095 5 C -0.191 4.191 6 C 0.096 3.904 7 N -0.483 5.483 8 C 0.428 3.572 9 N -0.542 5.542 10 C 0.172 3.828 11 C -0.252 4.252 12 H 0.072 0.928 13 C 0.013 3.987 14 N -0.901 5.901 15 Si 0.914 3.086 16 H -0.280 1.280 17 H -0.288 1.288 18 H -0.282 1.282 19 H 0.074 0.926 20 H 0.101 0.899 21 H 0.075 0.925 22 H 0.123 0.877 23 H 0.125 0.875 24 H 0.144 0.856 25 H 0.039 0.961 26 H 0.057 0.943 27 H 0.000 1.000 28 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.475 2.137 -1.327 12.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.339 4.339 2 S 0.192 5.808 3 C -0.276 4.276 4 C -0.127 4.127 5 C -0.213 4.213 6 C -0.065 4.065 7 N -0.196 5.196 8 C 0.194 3.806 9 N -0.261 5.261 10 C 0.028 3.972 11 C -0.380 4.380 12 H 0.090 0.910 13 C -0.187 4.187 14 N -0.544 5.544 15 Si 0.743 3.257 16 H -0.206 1.206 17 H -0.214 1.214 18 H -0.208 1.208 19 H 0.093 0.907 20 H 0.120 0.880 21 H 0.094 0.906 22 H 0.141 0.859 23 H 0.143 0.857 24 H 0.161 0.839 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.018 0.982 28 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.693 1.198 -1.376 10.848 hybrid contribution -1.309 0.756 0.845 1.731 sum -12.002 1.954 -0.532 12.172 Atomic orbital electron populations 1.23769 0.99326 1.06258 1.04584 1.86134 1.00545 1.02187 1.91933 1.23636 0.97775 0.97836 1.08306 1.21352 0.97930 0.93020 1.00437 1.21791 0.97743 0.95865 1.05898 1.22613 0.88864 0.98705 0.96365 1.68182 1.37617 1.02212 1.11624 1.18250 0.87084 0.86457 0.88853 1.41458 1.39723 1.39765 1.05178 1.20901 0.94449 0.99088 0.82714 1.19037 0.97850 1.34997 0.86102 0.91046 1.25094 0.95282 1.00692 0.97621 1.70079 1.09739 1.47135 1.27484 0.86196 0.77832 0.79368 0.82351 1.20568 1.21380 1.20763 0.90692 0.88014 0.90577 0.85902 0.85715 0.83861 0.94272 0.92443 0.98159 0.93323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 9.17 101.05 0.93 -1.17 15 2 S -0.05 -0.90 22.01 -107.50 -2.37 -3.27 15 3 C -0.16 -3.17 6.15 -38.64 -0.24 -3.41 15 4 C -0.09 -1.56 9.46 -39.10 -0.37 -1.93 15 5 C -0.19 -2.96 10.10 -39.41 -0.40 -3.36 15 6 C 0.10 1.73 11.17 -17.53 -0.20 1.53 15 7 N -0.48 -11.28 10.39 -12.24 -0.13 -11.41 15 8 C 0.43 10.31 6.01 -154.86 -0.93 9.38 15 9 N -0.54 -14.50 2.33 -122.27 -0.29 -14.78 15 10 C 0.17 4.46 8.94 59.85 0.54 4.99 15 11 C -0.25 -7.17 9.66 -15.11 -0.15 -7.32 15 12 H 0.07 2.04 7.84 -52.49 -0.41 1.63 15 13 C 0.01 0.36 5.19 -17.45 -0.09 0.27 15 14 N -0.90 -26.40 10.41 55.49 0.58 -25.82 15 15 Si 0.91 22.16 29.56 -169.99 -5.03 17.13 15 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 15 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 19 H 0.07 0.83 7.78 -51.92 -0.40 0.43 15 20 H 0.10 1.06 8.14 -51.93 -0.42 0.64 15 21 H 0.08 0.87 7.79 -51.92 -0.40 0.46 15 22 H 0.12 1.62 6.04 -52.49 -0.32 1.31 15 23 H 0.12 1.44 8.06 -52.49 -0.42 1.02 15 24 H 0.14 2.09 8.06 -52.48 -0.42 1.66 15 25 H 0.04 1.09 7.34 -51.93 -0.38 0.71 15 26 H 0.06 1.54 7.20 -51.93 -0.37 1.17 15 27 H 0.00 0.00 8.00 -51.93 -0.42 -0.42 15 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 15 LS Contribution 256.43 15.07 3.86 3.86 Total: -1.00 -31.60 256.43 -7.38 -38.98 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: -3.11 Total: -3.69 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -0.91 Total: -1.01 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 0.17 Total: -52.01 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.13 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.37 Total: -3.27 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -31.60 -7.38 -38.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799577.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.842 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds