Wall clock time and date at job start Sun Mar 29 2020 22:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76198 * 102.99828 * 2 1 4 4 C 1.39752 * 120.83395 * 0.24055 * 3 2 1 5 5 C 1.37799 * 119.24016 * 180.23187 * 4 3 2 6 6 N 1.32029 * 120.95093 * 359.77683 * 5 4 3 7 7 C 1.32622 * 121.81930 * 359.97438 * 6 5 4 8 8 N 1.38882 * 119.66949 * 179.97438 * 7 6 5 9 9 C 1.46498 * 119.99890 * 4.98141 * 8 7 6 10 10 C 1.36919 * 119.99985 * 184.97498 * 8 7 6 11 11 H 1.08001 * 119.99857 * 24.33728 * 10 8 7 12 12 C 1.38809 * 119.99926 * 204.33440 * 10 8 7 13 13 N 1.31573 * 120.00289 * 10.43716 * 12 10 8 14 14 Si 1.86796 * 119.99987 * 190.43821 * 12 10 8 15 15 H 1.48504 * 109.47397 * 60.00216 * 14 12 10 16 16 H 1.48503 * 109.47449 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47126 * 300.00053 * 14 12 10 18 18 C 1.38890 * 120.66268 * 359.97438 * 7 6 5 19 19 H 1.09009 * 109.47147 * 300.00196 * 1 2 3 20 20 H 1.08999 * 109.47517 * 59.99966 * 1 2 3 21 21 H 1.08996 * 109.47264 * 180.02562 * 1 2 3 22 22 H 1.08004 * 120.37589 * 0.03210 * 4 3 2 23 23 H 1.07996 * 119.52008 * 179.78996 * 5 4 3 24 24 H 1.08997 * 109.47642 * 93.55140 * 9 8 7 25 25 H 1.09006 * 109.47044 * 213.55266 * 9 8 7 26 26 H 1.09005 * 109.47227 * 333.54906 * 9 8 7 27 27 H 0.96997 * 120.00225 * 179.97438 * 13 12 10 28 28 H 1.07997 * 120.50725 * 179.97438 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.2022 2.6847 0.0050 5 6 1.5493 4.0182 0.0000 6 7 2.8162 4.3901 -0.0050 7 6 3.8045 3.5058 -0.0050 8 7 5.1215 3.9467 -0.0110 9 6 5.4151 5.3781 0.0929 10 6 6.1453 3.0434 -0.1138 11 1 5.9720 2.0805 -0.5712 12 6 7.4060 3.3654 0.3697 13 7 7.5729 4.4432 1.1055 14 14 8.8656 2.2683 -0.0244 15 1 9.0521 2.2021 -1.4962 16 1 10.0893 2.8276 0.6043 17 1 8.6162 0.9035 0.5049 18 6 3.5357 2.1431 0.0009 19 1 -0.3634 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 0.1629 2.3908 0.0095 23 1 0.7739 4.7699 0.0004 24 1 5.5820 5.6400 1.1377 25 1 6.3091 5.6086 -0.4867 26 1 4.5729 5.9510 -0.2952 27 1 8.4538 4.6680 1.4437 28 1 4.3425 1.4252 0.0005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166802141.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:24 Heat of formation + Delta-G solvation = 34.824628 kcal Electronic energy + Delta-G solvation = -12983.841276 eV Core-core repulsion = 10739.899001 eV Total energy + Delta-G solvation = -2243.942275 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.74994 -37.71427 -34.00311 -33.03504 -31.06416 -29.51136 -28.46235 -25.94723 -24.04904 -22.77755 -19.55033 -18.68658 -17.14120 -16.98983 -16.58902 -15.97459 -15.55767 -15.22873 -14.86359 -14.53883 -14.21701 -13.89979 -13.37655 -13.31889 -12.92655 -12.81785 -12.61698 -12.32427 -12.11769 -11.50604 -11.27072 -11.17299 -10.52674 -10.02726 -8.74578 -8.50542 -8.31536 -5.87904 0.52133 0.62813 0.69750 1.40223 1.46735 1.51573 1.57979 2.21320 2.84931 2.97229 3.32157 3.93015 4.35782 4.37536 4.41883 4.50691 4.62104 4.79833 4.91598 4.97284 5.02495 5.23356 5.29398 5.31642 5.40930 5.76686 6.13058 6.58715 7.19216 7.31185 7.84856 8.65552 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.033356 B = 0.008412 C = 0.006841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.216707 B = 3327.944658 C = 4092.009217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.149 6.149 3 C -0.003 4.003 4 C -0.296 4.296 5 C 0.164 3.836 6 N -0.594 5.594 7 C 0.362 3.638 8 N -0.450 5.450 9 C 0.148 3.852 10 C -0.334 4.334 11 H 0.092 0.908 12 C -0.011 4.011 13 N -0.901 5.901 14 Si 0.998 3.002 15 H -0.265 1.265 16 H -0.276 1.276 17 H -0.266 1.266 18 C -0.258 4.258 19 H 0.093 0.907 20 H 0.094 0.906 21 H 0.129 0.871 22 H 0.154 0.846 23 H 0.181 0.819 24 H 0.034 0.966 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.273 0.727 28 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.940 -5.705 -2.124 12.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S 0.091 5.909 3 C -0.123 4.123 4 C -0.326 4.326 5 C 0.001 3.999 6 N -0.316 5.316 7 C 0.122 3.878 8 N -0.141 5.141 9 C 0.004 3.996 10 C -0.462 4.462 11 H 0.110 0.890 12 C -0.213 4.213 13 N -0.537 5.537 14 Si 0.820 3.180 15 H -0.190 1.190 16 H -0.201 1.201 17 H -0.191 1.191 18 C -0.292 4.292 19 H 0.112 0.888 20 H 0.113 0.887 21 H 0.148 0.852 22 H 0.171 0.829 23 H 0.198 0.802 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.546 -5.648 -2.020 11.275 hybrid contribution 0.104 0.065 0.050 0.133 sum -9.442 -5.583 -1.971 11.145 Atomic orbital electron populations 1.23746 0.90750 1.08458 1.06727 1.85405 1.10731 1.02428 1.92327 1.21917 0.95501 0.97536 0.97334 1.21678 0.99094 0.93419 1.18444 1.22710 0.91623 0.95180 0.90391 1.67205 1.00898 1.38129 1.25383 1.18620 0.86047 0.89096 0.94055 1.42606 1.00805 1.06377 1.64335 1.21075 0.97954 0.80486 1.00046 1.19782 0.88701 0.99616 1.38098 0.88993 1.26290 1.01664 0.98771 0.94541 1.70197 1.24777 1.26655 1.32110 0.84920 0.76258 0.77958 0.78855 1.19016 1.20078 1.19123 1.20697 0.95687 0.94847 1.17956 0.88815 0.88696 0.85230 0.82886 0.80207 0.94760 0.93613 0.92805 0.91760 0.87123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 9.19 113.37 1.04 -1.31 15 2 S -0.15 -4.55 22.60 -56.49 -1.28 -5.83 15 3 C 0.00 -0.11 6.16 22.87 0.14 0.03 15 4 C -0.30 -9.89 9.43 22.53 0.21 -9.67 15 5 C 0.16 5.92 11.16 84.56 0.94 6.87 15 6 N -0.59 -27.24 9.02 -193.54 -1.75 -28.99 15 7 C 0.36 18.43 7.33 132.98 0.98 19.41 15 8 N -0.45 -24.62 3.12 -541.42 -1.69 -26.31 15 9 C 0.15 7.67 8.78 127.77 1.12 8.79 15 10 C -0.33 -18.41 8.89 84.04 0.75 -17.66 15 11 H 0.09 4.97 6.34 -2.91 -0.02 4.95 15 12 C -0.01 -0.56 5.14 84.87 0.44 -0.13 15 13 N -0.90 -49.62 10.66 21.65 0.23 -49.39 15 14 Si 1.00 41.65 29.57 68.60 2.03 43.68 15 15 H -0.27 -10.71 7.11 99.48 0.71 -10.00 15 16 H -0.28 -11.14 7.11 99.48 0.71 -10.44 15 17 H -0.27 -10.85 7.11 99.48 0.71 -10.14 15 18 C -0.26 -12.26 9.05 22.66 0.21 -12.05 15 19 H 0.09 1.56 7.78 -2.39 -0.02 1.55 15 20 H 0.09 1.56 7.81 -2.39 -0.02 1.54 15 21 H 0.13 1.69 8.14 -2.39 -0.02 1.67 15 22 H 0.15 3.78 6.07 -2.91 -0.02 3.77 15 23 H 0.18 4.81 8.06 -2.91 -0.02 4.79 15 24 H 0.03 1.87 7.41 -2.39 -0.02 1.85 15 25 H 0.05 2.40 7.26 -2.38 -0.02 2.38 15 26 H 0.05 2.58 7.19 -2.38 -0.02 2.56 15 27 H 0.27 14.11 8.31 -92.71 -0.77 13.33 15 28 H 0.11 5.52 6.28 -2.91 -0.02 5.50 15 Total: -1.00 -63.81 252.06 4.54 -59.27 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 1.16 Total: 13.30 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 5.82 Total: -5.74 kcal Atomic # 7 Polarization: -101.48 SS G_CDS: -3.20 Total: -104.69 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Atomic # 16 Polarization: -4.55 SS G_CDS: -1.28 Total: -5.83 kcal Total: -63.81 4.54 -59.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166802141.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.097 kcal (2) G-P(sol) polarization free energy of solvation -63.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds