Wall clock time and date at job start Sun Mar 29 2020 21:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29328 * 1 3 3 N 1.37193 * 119.99930 * 2 1 4 4 C 1.38976 * 119.99862 * 354.14947 * 3 2 1 5 5 C 1.38638 * 120.28110 * 331.31111 * 4 3 2 6 6 C 1.38332 * 120.01787 * 179.97438 * 5 4 3 7 7 Cl 1.73593 * 119.70491 * 180.02562 * 6 5 4 8 8 C 1.39047 * 120.59273 * 0.02562 * 6 5 4 9 9 C 1.36414 * 120.56634 * 359.67217 * 8 6 5 10 10 C 1.40765 * 119.95986 * 0.60451 * 9 8 6 11 11 C 1.41012 * 120.28767 * 179.69388 * 10 9 8 12 12 H 1.08005 * 119.99791 * 152.62371 * 11 10 9 13 13 C 1.39919 * 120.00345 * 332.62400 * 11 10 9 14 14 N 1.30880 * 119.99848 * 332.84796 * 13 11 10 15 15 Si 1.86803 * 119.99971 * 152.84428 * 13 11 10 16 16 H 1.48506 * 109.46978 * 180.02562 * 15 13 11 17 17 H 1.48501 * 109.47268 * 300.00012 * 15 13 11 18 18 H 1.48494 * 109.47391 * 60.00236 * 15 13 11 19 19 H 0.97004 * 119.99570 * 179.97438 * 1 2 3 20 20 H 1.08004 * 120.00199 * 180.02562 * 2 1 3 21 21 H 0.97000 * 119.99653 * 174.15105 * 3 2 1 22 22 H 1.08001 * 119.98650 * 359.96025 * 5 4 3 23 23 H 1.08000 * 119.71897 * 180.02562 * 8 6 5 24 24 H 1.07998 * 120.02420 * 180.30491 * 9 8 6 25 25 H 0.97001 * 120.00204 * 352.05758 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2933 0.0000 0.0000 3 7 1.9792 1.1881 0.0000 4 6 1.2897 2.3885 -0.1227 5 6 0.0865 2.4365 -0.8097 6 6 -0.5955 3.6342 -0.9280 7 17 -2.1018 3.6849 -1.7894 8 6 -0.0854 4.7979 -0.3632 9 6 1.0934 4.7769 0.3231 10 6 1.8099 3.5722 0.4529 11 6 3.0323 3.5440 1.1554 12 1 3.3580 2.6332 1.6359 13 6 3.8232 4.6958 1.2300 14 7 3.7583 5.5966 0.2827 15 14 4.9716 4.9478 2.6815 16 1 5.6924 6.2367 2.5245 17 1 4.1820 4.9728 3.9390 18 1 5.9531 3.8347 2.7354 19 1 -0.4850 -0.8401 -0.0004 20 1 1.8333 -0.9353 -0.0004 21 1 2.9454 1.1903 0.0856 22 1 -0.3183 1.5386 -1.2527 23 1 -0.6298 5.7252 -0.4638 24 1 1.4791 5.6849 0.7625 25 1 3.2521 5.4157 -0.5248 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167870739.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:53 Heat of formation + Delta-G solvation = 16.198751 kcal Electronic energy + Delta-G solvation = -12826.764229 eV Core-core repulsion = 10444.137475 eV Total energy + Delta-G solvation = -2382.626754 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 224.041 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.32412 -37.72059 -37.02465 -35.44426 -33.43277 -31.03095 -30.15154 -26.84974 -23.84389 -22.91793 -21.28766 -19.86668 -18.69852 -17.07357 -16.50604 -16.32084 -15.73827 -15.40791 -14.74620 -14.38841 -14.10622 -13.90622 -13.28336 -12.92938 -12.61168 -12.24617 -11.98406 -11.84309 -11.55127 -11.44833 -10.80908 -10.22627 -9.86648 -9.34414 -9.20569 -8.43428 -6.32176 0.76463 0.91214 1.56835 1.66274 1.68305 1.84151 1.97980 2.36781 2.69046 2.74561 3.55431 4.20704 4.39364 4.47914 4.72875 5.03222 5.09684 5.44771 5.49871 5.57299 5.76905 5.88816 6.11238 6.21546 6.51611 6.72074 6.92202 7.00209 7.84623 8.07550 Molecular weight = 224.04amu Principal moments of inertia in cm(-1) A = 0.028197 B = 0.010058 C = 0.007680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.792354 B = 2783.129271 C = 3644.771583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.377 3.623 3 N -0.639 5.639 4 C 0.045 3.955 5 C -0.075 4.075 6 C -0.149 4.149 7 Cl -0.107 7.107 8 C -0.095 4.095 9 C -0.215 4.215 10 C 0.058 3.942 11 C -0.539 4.539 12 H 0.084 0.916 13 C 0.010 3.990 14 N -0.811 5.811 15 Si 1.112 2.888 16 H -0.278 1.278 17 H -0.271 1.271 18 H -0.252 1.252 19 H 0.348 0.652 20 H 0.164 0.836 21 H 0.418 0.582 22 H 0.137 0.863 23 H 0.111 0.889 24 H 0.097 0.903 25 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.674 -6.787 0.491 6.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.076 3.924 3 N -0.269 5.269 4 C -0.051 4.051 5 C -0.097 4.097 6 C -0.177 4.177 7 Cl -0.079 7.079 8 C -0.115 4.115 9 C -0.236 4.236 10 C 0.053 3.947 11 C -0.567 4.567 12 H 0.102 0.898 13 C -0.208 4.208 14 N -0.434 5.434 15 Si 0.931 3.069 16 H -0.203 1.203 17 H -0.196 1.196 18 H -0.176 1.176 19 H 0.165 0.835 20 H 0.180 0.820 21 H 0.256 0.744 22 H 0.154 0.846 23 H 0.129 0.871 24 H 0.115 0.885 25 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.828 -4.976 1.032 5.149 hybrid contribution -0.868 -1.780 -0.892 2.172 sum -0.040 -6.756 0.140 6.757 Atomic orbital electron populations 1.68941 1.09006 1.36921 1.29939 1.23297 0.91523 0.88927 0.88684 1.41605 1.09165 1.01850 1.74274 1.17622 0.96727 0.87363 1.03434 1.20729 0.94716 0.96195 0.98083 1.20168 0.91536 0.95446 1.10552 1.98213 1.33789 1.98905 1.77002 1.20357 0.96223 0.96257 0.98669 1.20563 0.96950 0.98294 1.07769 1.17850 0.94476 0.91237 0.91136 1.20476 1.04072 1.00989 1.31184 0.89771 1.28264 0.98905 0.90961 1.02625 1.70562 1.31776 1.35521 1.05524 0.83041 0.74411 0.77822 0.71675 1.20297 1.19635 1.17582 0.83526 0.82013 0.74398 0.84583 0.87093 0.88514 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -27.80 10.46 -59.56 -0.62 -28.42 15 2 C 0.38 11.29 12.37 179.90 2.23 13.52 15 3 N -0.64 -23.26 5.12 -189.39 -0.97 -24.22 15 4 C 0.05 2.08 6.40 38.92 0.25 2.33 15 5 C -0.07 -3.43 8.37 22.39 0.19 -3.24 15 6 C -0.15 -6.82 6.33 22.49 0.14 -6.68 15 7 Cl -0.11 -4.23 28.94 -2.72 -0.08 -4.30 15 8 C -0.10 -4.48 9.74 22.04 0.21 -4.27 15 9 C -0.22 -10.89 8.02 22.46 0.18 -10.71 15 10 C 0.06 2.89 5.25 -21.17 -0.11 2.78 15 11 C -0.54 -25.97 8.26 23.36 0.19 -25.77 15 12 H 0.08 3.80 7.34 -2.91 -0.02 3.77 15 13 C 0.01 0.48 4.87 85.24 0.42 0.89 15 14 N -0.81 -41.26 12.35 21.83 0.27 -40.99 15 15 Si 1.11 39.96 30.01 68.60 2.06 42.02 15 16 H -0.28 -10.10 7.11 99.48 0.71 -9.40 15 17 H -0.27 -9.53 7.11 99.48 0.71 -8.82 15 18 H -0.25 -8.02 7.11 99.48 0.71 -7.31 15 19 H 0.35 9.81 8.92 -92.71 -0.83 8.98 15 20 H 0.16 2.98 8.06 -2.91 -0.02 2.96 15 21 H 0.42 13.73 7.83 -92.71 -0.73 13.00 15 22 H 0.14 6.05 5.93 -2.91 -0.02 6.03 15 23 H 0.11 4.77 8.06 -2.91 -0.02 4.75 15 24 H 0.10 5.08 6.72 -2.91 -0.02 5.06 15 25 H 0.28 15.14 7.05 -92.71 -0.65 14.49 15 Total: -1.00 -57.73 237.70 4.16 -53.56 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: -0.19 Total: 33.50 kcal Atomic # 6 Polarization: -34.84 SS G_CDS: 3.70 Total: -31.15 kcal Atomic # 7 Polarization: -92.31 SS G_CDS: -1.32 Total: -93.64 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.06 Total: 42.02 kcal Atomic # 17 Polarization: -4.23 SS G_CDS: -0.08 Total: -4.30 kcal Total: -57.73 4.16 -53.56 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167870739.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.761 kcal (2) G-P(sol) polarization free energy of solvation -57.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds