Wall clock time and date at job start Sun Mar 29 2020 21:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47182 * 2 1 4 4 C 1.50707 * 109.47052 * 119.99829 * 2 1 3 5 5 H 1.07996 * 119.99853 * 119.99671 * 4 2 1 6 6 C 1.37880 * 120.00037 * 300.00459 * 4 2 1 7 7 N 1.31519 * 119.99924 * 359.97438 * 6 4 2 8 8 Si 1.86791 * 120.00021 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47440 * 89.99917 * 8 6 4 10 10 H 1.48508 * 109.47063 * 209.99592 * 8 6 4 11 11 H 1.48500 * 109.47248 * 329.99664 * 8 6 4 12 12 N 1.46891 * 109.47504 * 239.99739 * 2 1 3 13 13 C 1.46901 * 111.00349 * 85.00057 * 12 2 1 14 14 H 1.09002 * 110.81216 * 31.66387 * 13 12 2 15 15 C 1.54885 * 110.76251 * 155.00188 * 13 12 2 16 16 C 1.54261 * 104.31508 * 156.32372 * 15 13 12 17 17 H 1.09007 * 117.40795 * 116.30060 * 16 15 13 18 18 C 1.53868 * 106.60098 * 336.32587 * 16 15 13 19 19 H 1.09002 * 121.33341 * 138.62210 * 18 16 15 20 20 C 1.54269 * 106.59717 * 0.56796 * 18 16 15 21 21 C 1.52995 * 118.20252 * 272.14390 * 16 15 13 22 22 C 1.52997 * 117.46423 * 201.21282 * 21 16 15 23 23 C 1.53000 * 117.45946 * 346.02250 * 21 16 15 24 24 H 1.08998 * 109.47623 * 300.00574 * 1 2 3 25 25 H 1.09004 * 109.47022 * 60.00042 * 1 2 3 26 26 H 1.09003 * 109.47182 * 180.02562 * 1 2 3 27 27 H 0.96994 * 120.00266 * 180.02562 * 7 6 4 28 28 H 1.00900 * 111.00521 * 208.96088 * 12 2 1 29 29 H 1.08998 * 110.48548 * 37.57954 * 15 13 12 30 30 H 1.09003 * 110.48651 * 275.07419 * 15 13 12 31 31 H 1.08995 * 110.48829 * 142.29057 * 20 18 16 32 32 H 1.09008 * 110.48371 * 264.79689 * 20 18 16 33 33 H 1.09003 * 109.46865 * 60.00387 * 22 21 16 34 34 H 1.08998 * 109.47114 * 179.97438 * 22 21 16 35 35 H 1.08996 * 109.47230 * 300.00387 * 22 21 16 36 36 H 1.09000 * 109.47305 * 53.37561 * 23 21 16 37 37 H 1.08995 * 109.47323 * 173.37388 * 23 21 16 38 38 H 1.08997 * 109.46897 * 293.37736 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2394 2.4828 7 7 0.9433 0.8302 2.6034 8 14 2.3211 -1.1203 4.0080 9 1 3.6294 -0.5459 4.4125 10 1 1.3428 -0.9491 5.1121 11 1 2.4856 -2.5662 3.7121 12 7 2.0197 -0.6925 -1.1993 13 6 2.0826 0.2225 -2.3468 14 1 2.3060 1.2382 -2.0205 15 6 3.1281 -0.2644 -3.3807 16 6 2.6733 0.3705 -4.7110 17 1 3.3451 1.0903 -5.1789 18 6 1.1679 0.6555 -4.5701 19 1 0.7289 1.5812 -4.9424 20 6 0.7632 0.1971 -3.1538 21 6 1.6623 -0.3933 -5.5684 22 6 1.5897 -0.0412 -7.0555 23 6 1.4158 -1.8641 -5.2264 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7092 1.1618 3.4844 28 1 2.9173 -1.1206 -1.0286 29 1 3.1152 -1.3519 -3.4530 30 1 4.1239 0.0872 -3.1108 31 1 0.0302 0.8812 -2.7263 32 1 0.3665 -0.8179 -3.1801 33 1 2.5585 -0.2248 -7.5200 34 1 0.8327 -0.6591 -7.5386 35 1 1.3265 1.0105 -7.1675 36 1 1.1581 -1.9535 -4.1711 37 1 0.5956 -2.2459 -5.8343 38 1 2.3181 -2.4405 -5.4302 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170729766.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:41 Heat of formation + Delta-G solvation = 12.367694 kcal Electronic energy + Delta-G solvation = -15769.479892 eV Core-core repulsion = 13418.903040 eV Total energy + Delta-G solvation = -2350.576852 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.92079 -35.78814 -33.05806 -31.11374 -28.59063 -27.90341 -27.48253 -26.04448 -24.91627 -20.44869 -19.73470 -19.33535 -18.23799 -16.39199 -15.69395 -14.88642 -14.63723 -13.95912 -13.69943 -13.41275 -13.21330 -12.63471 -12.31613 -11.94937 -11.83249 -11.79670 -11.27391 -11.05933 -11.00220 -10.87861 -10.77278 -10.59871 -10.38436 -10.08993 -10.02226 -9.74498 -9.29887 -9.22172 -8.74355 -8.43429 -7.25363 -6.00132 -4.06561 3.30461 3.37152 3.41102 3.75108 4.41347 4.62772 4.88979 4.95014 5.15634 5.30649 5.43286 5.48604 5.53708 5.64935 5.67202 5.85455 5.90567 6.00158 6.03181 6.11458 6.14378 6.15266 6.29583 6.46348 6.52007 6.54555 6.63451 6.87752 6.98641 7.22758 7.29882 7.57415 7.81348 7.94675 8.31465 8.45113 8.72426 9.05022 9.59352 11.06055 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.060081 B = 0.005795 C = 0.005644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.924663 B = 4830.822797 C = 4960.093064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.212 3.788 3 H 0.000 1.000 4 C -0.518 4.518 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.681 5.681 13 C 0.088 3.912 14 H 0.042 0.958 15 C -0.099 4.099 16 C -0.159 4.159 17 H 0.102 0.898 18 C -0.156 4.156 19 H 0.101 0.899 20 C -0.085 4.085 21 C -0.104 4.104 22 C -0.112 4.112 23 C -0.125 4.125 24 H 0.078 0.922 25 H 0.009 0.991 26 H 0.029 0.971 27 H 0.260 0.740 28 H 0.332 0.668 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.590 -1.197 -14.632 14.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.104 3.896 3 H 0.017 0.983 4 C -0.557 4.557 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.312 5.312 13 C -0.023 4.023 14 H 0.060 0.940 15 C -0.137 4.137 16 C -0.177 4.177 17 H 0.120 0.880 18 C -0.175 4.175 19 H 0.119 0.881 20 C -0.123 4.123 21 C -0.104 4.104 22 C -0.169 4.169 23 C -0.182 4.182 24 H 0.096 0.904 25 H 0.028 0.972 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.149 0.851 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.885 -1.324 -14.621 14.707 hybrid contribution 1.078 0.325 1.108 1.580 sum 1.963 -0.999 -13.512 13.691 Atomic orbital electron populations 1.21764 0.97911 0.99236 0.99473 1.19156 0.92686 0.92123 0.85596 0.98262 1.21291 1.31339 1.12473 0.90565 0.92290 1.24920 0.95062 0.95021 0.99024 1.69904 1.36679 1.22942 1.23388 0.86536 0.78439 0.80080 0.82562 1.20807 1.21231 1.19861 1.60710 1.31814 1.32799 1.05902 1.22593 0.93140 0.95053 0.91515 0.93990 1.22142 0.98301 1.00843 0.92409 1.23248 0.92621 1.03340 0.98517 0.88023 1.23503 0.97461 0.99632 0.96900 0.88079 1.22044 0.97809 1.01817 0.90665 1.21567 1.02761 0.93864 0.92244 1.21292 1.01507 1.01070 0.93030 1.21451 1.00836 0.92875 1.03032 0.90375 0.97213 0.95148 0.92984 0.85058 0.90630 0.92095 0.91670 0.90411 0.92461 0.92255 0.92703 0.90516 0.92796 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 9.04 37.16 0.34 -2.83 16 2 C 0.21 5.43 2.60 -68.87 -0.18 5.25 16 3 H 0.00 -0.01 7.44 -51.93 -0.39 -0.39 16 4 C -0.52 -14.33 8.59 -34.44 -0.30 -14.63 16 5 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.72 11.32 55.43 0.63 -25.09 16 8 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.68 -14.59 6.23 -99.00 -0.62 -15.21 16 13 C 0.09 1.61 3.17 -65.84 -0.21 1.40 16 14 H 0.04 0.85 7.45 -51.93 -0.39 0.47 16 15 C -0.10 -1.51 5.63 -25.08 -0.14 -1.65 16 16 C -0.16 -2.16 6.63 -89.51 -0.59 -2.75 16 17 H 0.10 1.28 8.14 -51.92 -0.42 0.85 16 18 C -0.16 -2.21 6.52 -89.50 -0.58 -2.80 16 19 H 0.10 1.34 8.13 -51.93 -0.42 0.92 16 20 C -0.09 -1.44 5.04 -25.19 -0.13 -1.57 16 21 C -0.10 -1.30 2.68 -154.51 -0.41 -1.72 16 22 C -0.11 -1.14 9.84 37.16 0.37 -0.77 16 23 C -0.13 -1.56 8.46 37.16 0.31 -1.24 16 24 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 25 H 0.01 0.21 5.88 -51.93 -0.31 -0.10 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.33 6.95 7.92 -39.29 -0.31 6.64 16 29 H 0.08 1.14 6.79 -51.93 -0.35 0.79 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 1.16 6.72 -51.93 -0.35 0.81 16 32 H 0.08 1.36 6.03 -51.92 -0.31 1.05 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.55 8.00 -51.93 -0.42 0.13 16 35 H 0.05 0.53 7.96 -51.93 -0.41 0.12 16 36 H 0.08 1.10 5.02 -51.93 -0.26 0.84 16 37 H 0.05 0.60 8.04 -51.93 -0.42 0.18 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 290.00 15.07 4.37 4.37 Total: -1.00 -28.11 290.00 -8.56 -36.67 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.30 Total: 4.56 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -1.62 Total: -21.69 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.01 Total: -40.30 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.11 -8.56 -36.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170729766.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.036 kcal (2) G-P(sol) polarization free energy of solvation -28.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds