Wall clock time and date at job start Sun Mar 29 2020 21:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47182 * 2 1 4 4 C 1.50707 * 109.47052 * 119.99829 * 2 1 3 5 5 H 1.07996 * 119.99853 * 119.99671 * 4 2 1 6 6 C 1.37880 * 120.00037 * 300.00459 * 4 2 1 7 7 N 1.31519 * 119.99924 * 359.97438 * 6 4 2 8 8 Si 1.86791 * 120.00021 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47440 * 89.99917 * 8 6 4 10 10 H 1.48508 * 109.47063 * 209.99592 * 8 6 4 11 11 H 1.48500 * 109.47248 * 329.99664 * 8 6 4 12 12 N 1.46891 * 109.47504 * 239.99739 * 2 1 3 13 13 C 1.46901 * 111.00349 * 85.00057 * 12 2 1 14 14 H 1.09002 * 110.81216 * 31.66387 * 13 12 2 15 15 C 1.54885 * 110.76251 * 155.00188 * 13 12 2 16 16 C 1.54261 * 104.31508 * 156.32372 * 15 13 12 17 17 H 1.09007 * 117.40795 * 116.30060 * 16 15 13 18 18 C 1.53868 * 106.60098 * 336.32587 * 16 15 13 19 19 H 1.09002 * 121.33341 * 138.62210 * 18 16 15 20 20 C 1.54269 * 106.59717 * 0.56796 * 18 16 15 21 21 C 1.52995 * 118.20252 * 272.14390 * 16 15 13 22 22 C 1.52997 * 117.46423 * 201.21282 * 21 16 15 23 23 C 1.53000 * 117.45946 * 346.02250 * 21 16 15 24 24 H 1.08998 * 109.47623 * 300.00574 * 1 2 3 25 25 H 1.09004 * 109.47022 * 60.00042 * 1 2 3 26 26 H 1.09003 * 109.47182 * 180.02562 * 1 2 3 27 27 H 0.96994 * 120.00266 * 180.02562 * 7 6 4 28 28 H 1.00900 * 111.00521 * 208.96088 * 12 2 1 29 29 H 1.08998 * 110.48548 * 37.57954 * 15 13 12 30 30 H 1.09003 * 110.48651 * 275.07419 * 15 13 12 31 31 H 1.08995 * 110.48829 * 142.29057 * 20 18 16 32 32 H 1.09008 * 110.48371 * 264.79689 * 20 18 16 33 33 H 1.09003 * 109.46865 * 60.00387 * 22 21 16 34 34 H 1.08998 * 109.47114 * 179.97438 * 22 21 16 35 35 H 1.08996 * 109.47230 * 300.00387 * 22 21 16 36 36 H 1.09000 * 109.47305 * 53.37561 * 23 21 16 37 37 H 1.08995 * 109.47323 * 173.37388 * 23 21 16 38 38 H 1.08997 * 109.46897 * 293.37736 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2394 2.4828 7 7 0.9433 0.8302 2.6034 8 14 2.3211 -1.1203 4.0080 9 1 3.6294 -0.5459 4.4125 10 1 1.3428 -0.9491 5.1121 11 1 2.4856 -2.5662 3.7121 12 7 2.0197 -0.6925 -1.1993 13 6 2.0826 0.2225 -2.3468 14 1 2.3060 1.2382 -2.0205 15 6 3.1281 -0.2644 -3.3807 16 6 2.6733 0.3705 -4.7110 17 1 3.3451 1.0903 -5.1789 18 6 1.1679 0.6555 -4.5701 19 1 0.7289 1.5812 -4.9424 20 6 0.7632 0.1971 -3.1538 21 6 1.6623 -0.3933 -5.5684 22 6 1.5897 -0.0412 -7.0555 23 6 1.4158 -1.8641 -5.2264 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7092 1.1618 3.4844 28 1 2.9173 -1.1206 -1.0286 29 1 3.1152 -1.3519 -3.4530 30 1 4.1239 0.0872 -3.1108 31 1 0.0302 0.8812 -2.7263 32 1 0.3665 -0.8179 -3.1801 33 1 2.5585 -0.2248 -7.5200 34 1 0.8327 -0.6591 -7.5386 35 1 1.3265 1.0105 -7.1675 36 1 1.1581 -1.9535 -4.1711 37 1 0.5956 -2.2459 -5.8343 38 1 2.3181 -2.4405 -5.4302 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170729766.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:40 Heat of formation + Delta-G solvation = -3.633561 kcal Electronic energy + Delta-G solvation = -15770.173758 eV Core-core repulsion = 13418.903040 eV Total energy + Delta-G solvation = -2351.270718 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.11682 -37.54668 -34.85319 -32.72529 -30.17539 -29.17347 -28.55984 -27.55672 -26.87026 -22.22323 -21.33446 -20.62834 -19.32007 -18.43947 -16.99520 -16.68664 -16.18013 -15.51486 -14.99271 -14.92494 -14.66374 -13.95917 -13.74698 -13.24024 -13.11559 -12.90992 -12.85777 -12.76492 -12.71068 -12.48676 -12.33562 -12.12911 -12.00909 -11.87559 -11.55498 -11.45989 -10.86530 -10.58043 -10.34181 -10.33337 -9.08050 -8.13671 -6.28459 1.41381 1.42595 1.53536 2.40978 2.66743 3.14338 3.39550 3.71818 3.85001 3.96234 4.22373 4.26789 4.32341 4.51940 4.60872 4.79110 4.81351 4.85076 4.87930 4.88277 5.00388 5.06413 5.08384 5.14192 5.20073 5.25911 5.30375 5.31461 5.39358 5.40151 5.50500 5.64477 5.72933 5.87579 6.22204 6.49487 6.79690 7.01279 7.42304 8.92017 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.060081 B = 0.005795 C = 0.005644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.924663 B = 4830.822797 C = 4960.093064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.218 3.782 3 H -0.037 1.037 4 C -0.539 4.539 5 H 0.060 0.940 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.267 1.267 12 N -0.676 5.676 13 C 0.082 3.918 14 H 0.018 0.982 15 C -0.091 4.091 16 C -0.159 4.159 17 H 0.118 0.882 18 C -0.167 4.167 19 H 0.112 0.888 20 C -0.081 4.081 21 C -0.088 4.088 22 C -0.110 4.110 23 C -0.127 4.127 24 H 0.053 0.947 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.262 0.738 28 H 0.333 0.667 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.271 -2.059 -16.128 16.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.109 3.891 3 H -0.019 1.019 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.790 3.210 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.191 1.191 12 N -0.307 5.307 13 C -0.029 4.029 14 H 0.036 0.964 15 C -0.129 4.129 16 C -0.177 4.177 17 H 0.136 0.864 18 C -0.186 4.186 19 H 0.130 0.870 20 C -0.119 4.119 21 C -0.088 4.088 22 C -0.167 4.167 23 C -0.183 4.183 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.151 0.849 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.570 -2.190 -16.139 16.362 hybrid contribution 0.855 0.610 1.548 1.870 sum 2.424 -1.580 -14.591 14.875 Atomic orbital electron populations 1.21578 0.97751 0.98697 0.99054 1.18942 0.92795 0.90330 0.87005 1.01922 1.21621 1.31683 1.12726 0.91670 0.92186 1.25768 0.95129 0.95692 1.02150 1.70039 1.37508 1.24168 1.24157 0.85457 0.77961 0.79063 0.78536 1.20084 1.20857 1.19142 1.60648 1.31914 1.32931 1.05181 1.22678 0.95618 0.93297 0.91263 0.96352 1.22033 0.97415 1.01044 0.92392 1.23292 0.92368 1.03946 0.98102 0.86363 1.23441 0.98065 1.01084 0.95966 0.86995 1.21907 0.96440 1.01100 0.92469 1.21720 1.00432 0.93304 0.93357 1.21321 1.02711 1.01724 0.90922 1.21461 1.01899 0.93161 1.01814 0.92836 0.95557 0.95509 0.92865 0.84899 0.90358 0.91525 0.93407 0.91043 0.91171 0.91113 0.92110 0.92811 0.91344 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.83 9.04 71.98 0.65 -5.18 16 2 C 0.22 11.51 2.60 44.17 0.11 11.62 16 3 H -0.04 -2.17 7.44 -2.39 -0.02 -2.19 16 4 C -0.54 -30.26 8.59 25.60 0.22 -30.04 16 5 H 0.06 3.28 7.62 -2.91 -0.02 3.26 16 6 C 0.01 0.66 5.30 84.65 0.45 1.10 16 7 N -0.92 -54.15 11.32 21.45 0.24 -53.90 16 8 Si 0.96 44.04 29.54 68.60 2.03 46.06 16 9 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 12 N -0.68 -29.55 6.23 -467.11 -2.91 -32.46 16 13 C 0.08 3.05 3.17 46.13 0.15 3.20 16 14 H 0.02 0.78 7.45 -2.39 -0.02 0.76 16 15 C -0.09 -2.68 5.63 31.67 0.18 -2.50 16 16 C -0.16 -3.97 6.63 -10.07 -0.07 -4.03 16 17 H 0.12 2.61 8.14 -2.38 -0.02 2.59 16 18 C -0.17 -4.48 6.52 -10.07 -0.07 -4.55 16 19 H 0.11 2.77 8.13 -2.39 -0.02 2.75 16 20 C -0.08 -2.76 5.04 31.60 0.16 -2.60 16 21 C -0.09 -1.96 2.68 -52.18 -0.14 -2.10 16 22 C -0.11 -1.82 9.84 71.98 0.71 -1.12 16 23 C -0.13 -2.86 8.46 71.98 0.61 -2.25 16 24 H 0.05 3.03 6.07 -2.39 -0.01 3.02 16 25 H 0.03 1.22 5.88 -2.39 -0.01 1.21 16 26 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 28 H 0.33 14.15 7.92 -89.69 -0.71 13.44 16 29 H 0.08 2.27 6.79 -2.39 -0.02 2.26 16 30 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.05 1.74 6.72 -2.39 -0.02 1.73 16 32 H 0.07 2.51 6.03 -2.38 -0.01 2.49 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 1.04 8.00 -2.39 -0.02 1.02 16 35 H 0.06 0.96 7.96 -2.39 -0.02 0.94 16 36 H 0.05 1.47 5.02 -2.39 -0.01 1.46 16 37 H 0.07 1.34 8.04 -2.39 -0.02 1.32 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -60.55 290.00 2.64 -57.90 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.32 Total: 20.84 kcal Atomic # 6 Polarization: -41.41 SS G_CDS: 2.96 Total: -38.44 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -2.67 Total: -86.36 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -60.55 2.64 -57.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170729766.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.267 kcal (2) G-P(sol) polarization free energy of solvation -60.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds