Wall clock time and date at job start Sun Mar 29 2020 21:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47521 * 2 1 4 4 C 1.53006 * 109.47102 * 240.00231 * 2 1 3 5 5 C 1.52997 * 109.47127 * 175.00294 * 4 2 1 6 6 C 1.50696 * 109.47055 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00290 * 0.02562 * 6 5 4 8 8 C 1.37887 * 120.00079 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99685 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00129 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46879 * 60.00177 * 10 8 6 12 12 H 1.48494 * 109.47196 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47151 * 300.00589 * 10 8 6 14 14 N 1.46895 * 109.47068 * 119.99967 * 2 1 3 15 15 C 1.46894 * 111.00510 * 274.99941 * 14 2 1 16 16 H 1.09005 * 109.35176 * 34.99559 * 15 14 2 17 17 C 1.50070 * 109.35894 * 275.27632 * 15 14 2 18 18 C 1.29249 * 124.22178 * 222.50150 * 17 15 14 19 19 C 1.50067 * 124.01693 * 0.74001 * 18 17 15 20 20 C 1.53024 * 110.14588 * 342.72805 * 19 18 17 21 21 C 1.53022 * 109.36349 * 154.72032 * 15 14 2 22 22 H 1.09006 * 109.46822 * 59.99692 * 1 2 3 23 23 H 1.08997 * 109.47474 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46922 * 300.00404 * 1 2 3 25 25 H 1.09001 * 109.47002 * 294.99868 * 4 2 1 26 26 H 1.08993 * 109.46955 * 55.00306 * 4 2 1 27 27 H 1.09001 * 109.47289 * 299.99953 * 5 4 2 28 28 H 1.09004 * 109.47261 * 59.99697 * 5 4 2 29 29 H 0.96999 * 119.99910 * 179.97438 * 9 8 6 30 30 H 1.00902 * 111.00088 * 38.95676 * 14 2 1 31 31 H 1.08001 * 117.96036 * 42.63767 * 17 15 14 32 32 H 1.08005 * 118.02325 * 180.57254 * 18 17 15 33 33 H 1.09002 * 109.35803 * 222.52674 * 19 18 17 34 34 H 1.08998 * 109.36146 * 102.93551 * 19 18 17 35 35 H 1.08997 * 109.64340 * 289.75327 * 20 19 18 36 36 H 1.08999 * 109.64259 * 169.12415 * 20 19 18 37 37 H 1.08995 * 109.64107 * 289.33378 * 21 15 14 38 38 H 1.09005 * 109.64122 * 49.96168 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0671 -1.3242 -2.5439 7 1 3.3687 -1.8046 -3.2131 8 6 5.4185 -1.3605 -2.8156 9 7 6.2689 -0.7752 -2.0010 10 14 6.0411 -2.2411 -4.3409 11 1 5.4487 -1.6153 -5.5502 12 1 7.5211 -2.1365 -4.4033 13 1 5.6485 -3.6721 -4.2813 14 7 2.0196 -0.6925 1.1994 15 6 2.0824 0.2225 2.3469 16 1 1.2569 0.9320 2.2888 17 6 3.3835 0.9697 2.3166 18 6 4.1167 1.1950 3.3569 19 6 3.7766 0.7261 4.7413 20 6 2.2962 0.3468 4.8204 21 6 1.9698 -0.5817 3.6438 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.7516 -1.7715 -1.2057 26 1 1.6054 -0.2617 -2.1370 27 1 3.8532 0.4369 -1.3573 28 1 3.9994 -1.0729 -0.4260 29 1 7.2196 -0.8010 -2.1919 30 1 1.4495 -1.4979 1.4100 31 1 3.7295 1.3457 1.3652 32 1 5.0317 1.7527 3.2217 33 1 3.9835 1.5243 5.4542 34 1 4.3860 -0.1432 4.9883 35 1 1.6837 1.2462 4.7582 36 1 2.1000 -0.1696 5.7600 37 1 0.9550 -0.9652 3.7502 38 1 2.6776 -1.4105 3.6237 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172486826.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:12 Heat of formation + Delta-G solvation = -12.302076 kcal Electronic energy + Delta-G solvation = -15515.879921 eV Core-core repulsion = 13164.233308 eV Total energy + Delta-G solvation = -2351.646613 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.83528 -36.23219 -33.12268 -31.49112 -30.81410 -29.23031 -27.27041 -24.98610 -22.39871 -22.24628 -21.12222 -19.55367 -17.59642 -16.14852 -16.04345 -15.21117 -14.68047 -14.33038 -13.86179 -13.37944 -13.03552 -12.63429 -12.57340 -12.34748 -12.28381 -12.13141 -11.84781 -11.38653 -11.12867 -10.92647 -10.79395 -10.50989 -10.40762 -10.06029 -9.98430 -9.55592 -9.16256 -8.86127 -8.73366 -8.18868 -7.80298 -5.84378 -3.85399 2.67153 3.40947 3.44987 3.47598 4.56492 4.57322 4.83836 4.91398 5.14978 5.38698 5.44423 5.50783 5.53982 5.56347 5.61918 5.66212 5.71460 5.83726 5.92333 5.99560 6.03189 6.15087 6.28909 6.35724 6.43873 6.52520 6.73062 6.93941 7.04430 7.29031 7.36776 7.60318 7.88305 7.90710 8.12814 8.29156 8.62190 9.23598 9.76775 11.26573 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.029950 B = 0.006554 C = 0.005645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.657074 B = 4271.393257 C = 4958.672221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.083 3.917 3 H 0.071 0.929 4 C -0.098 4.098 5 C 0.031 3.969 6 C -0.519 4.519 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.887 3.113 11 H -0.279 1.279 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.665 5.665 15 C 0.118 3.882 16 H 0.046 0.954 17 C -0.119 4.119 18 C -0.172 4.172 19 C -0.087 4.087 20 C -0.115 4.115 21 C -0.122 4.122 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.043 0.957 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.005 0.995 28 H 0.033 0.967 29 H 0.258 0.742 30 H 0.336 0.664 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.474 2.946 12.266 15.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.027 4.027 3 H 0.089 0.911 4 C -0.136 4.136 5 C -0.006 4.006 6 C -0.557 4.557 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.715 3.285 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.295 5.295 15 C 0.009 3.991 16 H 0.063 0.937 17 C -0.137 4.137 18 C -0.191 4.191 19 C -0.124 4.124 20 C -0.153 4.153 21 C -0.160 4.160 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.024 0.976 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.155 0.845 31 H 0.126 0.874 32 H 0.119 0.881 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.619 3.058 12.112 15.177 hybrid contribution -0.413 -0.344 -0.796 0.961 sum -9.032 2.714 11.316 14.731 Atomic orbital electron populations 1.22541 0.98729 1.01477 1.01176 1.21782 0.90780 0.98420 0.91711 0.91059 1.21624 1.00640 0.98332 0.93014 1.18983 0.88289 0.96364 0.97008 1.21325 0.91829 1.34065 1.08501 0.93214 1.24998 0.97136 0.95803 0.96478 1.69972 1.02152 1.44366 1.36935 0.86749 0.77557 0.80301 0.83881 1.20449 1.21422 1.20394 1.60527 1.57672 1.08709 1.02639 1.20307 0.94977 0.93576 0.90257 0.93674 1.22033 0.95799 0.97380 0.98521 1.21855 0.99952 1.02917 0.94410 1.20406 0.96078 1.00637 0.95280 1.21561 0.96554 0.99362 0.97866 1.21782 1.01379 0.98840 0.94003 0.92309 0.92797 0.93807 0.93524 0.93642 0.97620 0.94840 0.93245 0.84545 0.87382 0.88102 0.91747 0.91196 0.92073 0.91914 0.92262 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 9.15 37.16 0.34 -2.15 16 2 C 0.08 1.43 2.39 -67.71 -0.16 1.26 16 3 H 0.07 1.30 7.42 -51.93 -0.39 0.91 16 4 C -0.10 -2.08 4.83 -26.73 -0.13 -2.21 16 5 C 0.03 0.82 4.86 -27.89 -0.14 0.69 16 6 C -0.52 -15.26 9.11 -34.44 -0.31 -15.57 16 7 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -27.82 13.29 55.43 0.74 -27.08 16 10 Si 0.89 22.37 29.54 -169.99 -5.02 17.34 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 N -0.67 -11.06 5.49 -101.27 -0.56 -11.61 16 15 C 0.12 1.73 2.57 -69.16 -0.18 1.55 16 16 H 0.05 0.64 7.10 -51.93 -0.37 0.27 16 17 C -0.12 -1.94 9.05 -35.85 -0.32 -2.27 16 18 C -0.17 -2.52 9.80 -35.85 -0.35 -2.87 16 19 C -0.09 -1.02 6.11 -28.18 -0.17 -1.19 16 20 C -0.12 -1.24 6.01 -26.51 -0.16 -1.40 16 21 C -0.12 -1.50 5.26 -26.52 -0.14 -1.63 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 24 H 0.04 0.54 7.42 -51.93 -0.39 0.16 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 28 H 0.03 0.97 7.75 -51.93 -0.40 0.56 16 29 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.34 5.03 8.09 -39.29 -0.32 4.72 16 31 H 0.11 2.04 7.81 -52.49 -0.41 1.63 16 32 H 0.10 1.44 8.06 -52.48 -0.42 1.02 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 1.02 8.12 -51.93 -0.42 0.60 16 LS Contribution 303.44 15.07 4.57 4.57 Total: -1.00 -30.97 303.44 -8.97 -39.94 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.88 Total: 1.05 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: -1.82 Total: -24.22 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.18 Total: -38.70 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.97 -8.97 -39.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486826.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.642 kcal (2) G-P(sol) polarization free energy of solvation -30.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds