Wall clock time and date at job start Sun Mar 29 2020 21:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47521 * 2 1 4 4 C 1.53006 * 109.47102 * 240.00231 * 2 1 3 5 5 C 1.52997 * 109.47127 * 175.00294 * 4 2 1 6 6 C 1.50696 * 109.47055 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00290 * 0.02562 * 6 5 4 8 8 C 1.37887 * 120.00079 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99685 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00129 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46879 * 60.00177 * 10 8 6 12 12 H 1.48494 * 109.47196 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47151 * 300.00589 * 10 8 6 14 14 N 1.46895 * 109.47068 * 119.99967 * 2 1 3 15 15 C 1.46894 * 111.00510 * 274.99941 * 14 2 1 16 16 H 1.09005 * 109.35176 * 34.99559 * 15 14 2 17 17 C 1.50070 * 109.35894 * 275.27632 * 15 14 2 18 18 C 1.29249 * 124.22178 * 222.50150 * 17 15 14 19 19 C 1.50067 * 124.01693 * 0.74001 * 18 17 15 20 20 C 1.53024 * 110.14588 * 342.72805 * 19 18 17 21 21 C 1.53022 * 109.36349 * 154.72032 * 15 14 2 22 22 H 1.09006 * 109.46822 * 59.99692 * 1 2 3 23 23 H 1.08997 * 109.47474 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46922 * 300.00404 * 1 2 3 25 25 H 1.09001 * 109.47002 * 294.99868 * 4 2 1 26 26 H 1.08993 * 109.46955 * 55.00306 * 4 2 1 27 27 H 1.09001 * 109.47289 * 299.99953 * 5 4 2 28 28 H 1.09004 * 109.47261 * 59.99697 * 5 4 2 29 29 H 0.96999 * 119.99910 * 179.97438 * 9 8 6 30 30 H 1.00902 * 111.00088 * 38.95676 * 14 2 1 31 31 H 1.08001 * 117.96036 * 42.63767 * 17 15 14 32 32 H 1.08005 * 118.02325 * 180.57254 * 18 17 15 33 33 H 1.09002 * 109.35803 * 222.52674 * 19 18 17 34 34 H 1.08998 * 109.36146 * 102.93551 * 19 18 17 35 35 H 1.08997 * 109.64340 * 289.75327 * 20 19 18 36 36 H 1.08999 * 109.64259 * 169.12415 * 20 19 18 37 37 H 1.08995 * 109.64107 * 289.33378 * 21 15 14 38 38 H 1.09005 * 109.64122 * 49.96168 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0671 -1.3242 -2.5439 7 1 3.3687 -1.8046 -3.2131 8 6 5.4185 -1.3605 -2.8156 9 7 6.2689 -0.7752 -2.0010 10 14 6.0411 -2.2411 -4.3409 11 1 5.4487 -1.6153 -5.5502 12 1 7.5211 -2.1365 -4.4033 13 1 5.6485 -3.6721 -4.2813 14 7 2.0196 -0.6925 1.1994 15 6 2.0824 0.2225 2.3469 16 1 1.2569 0.9320 2.2888 17 6 3.3835 0.9697 2.3166 18 6 4.1167 1.1950 3.3569 19 6 3.7766 0.7261 4.7413 20 6 2.2962 0.3468 4.8204 21 6 1.9698 -0.5817 3.6438 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.7516 -1.7715 -1.2057 26 1 1.6054 -0.2617 -2.1370 27 1 3.8532 0.4369 -1.3573 28 1 3.9994 -1.0729 -0.4260 29 1 7.2196 -0.8010 -2.1919 30 1 1.4495 -1.4979 1.4100 31 1 3.7295 1.3457 1.3652 32 1 5.0317 1.7527 3.2217 33 1 3.9835 1.5243 5.4542 34 1 4.3860 -0.1432 4.9883 35 1 1.6837 1.2462 4.7582 36 1 2.1000 -0.1696 5.7600 37 1 0.9550 -0.9652 3.7502 38 1 2.6776 -1.4105 3.6237 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172486826.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:12 Heat of formation + Delta-G solvation = -30.895998 kcal Electronic energy + Delta-G solvation = -15516.686214 eV Core-core repulsion = 13164.233308 eV Total energy + Delta-G solvation = -2352.452906 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.99971 -37.59427 -35.20256 -33.08216 -31.89712 -30.92359 -28.41927 -26.97528 -23.66310 -23.36566 -22.83588 -21.10120 -18.72227 -18.33953 -17.34153 -16.52204 -16.44191 -15.89070 -14.99583 -14.70214 -14.50561 -14.26770 -13.87221 -13.67021 -13.46779 -13.30103 -13.25252 -13.09868 -12.83093 -12.63827 -12.34601 -11.97024 -11.75296 -11.53943 -11.38037 -11.23229 -11.03359 -10.92505 -10.48686 -9.93242 -9.09745 -8.13800 -6.24943 1.38680 1.42623 1.43121 1.50341 2.43286 3.17934 3.36239 3.78291 3.92962 4.07440 4.17652 4.29927 4.41956 4.43650 4.50085 4.53382 4.67255 4.77700 4.82282 4.93901 5.03016 5.03613 5.06042 5.10293 5.15724 5.27185 5.36276 5.43994 5.48603 5.58361 5.80496 5.88073 6.02753 6.08793 6.32934 6.34562 6.71642 6.95045 7.43148 8.97266 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.029950 B = 0.006554 C = 0.005645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.657074 B = 4271.393257 C = 4958.672221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.090 3.910 3 H 0.052 0.948 4 C -0.088 4.088 5 C 0.042 3.958 6 C -0.545 4.545 7 H 0.056 0.944 8 C -0.003 4.003 9 N -0.933 5.933 10 Si 0.963 3.037 11 H -0.267 1.267 12 H -0.283 1.283 13 H -0.267 1.267 14 N -0.687 5.687 15 C 0.124 3.876 16 H 0.054 0.946 17 C -0.149 4.149 18 C -0.163 4.163 19 C -0.087 4.087 20 C -0.111 4.111 21 C -0.117 4.117 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.048 0.952 27 H -0.029 1.029 28 H 0.002 0.998 29 H 0.260 0.740 30 H 0.346 0.654 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.970 2.106 13.026 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.020 4.020 3 H 0.070 0.930 4 C -0.126 4.126 5 C 0.005 3.995 6 C -0.583 4.583 7 H 0.074 0.926 8 C -0.200 4.200 9 N -0.574 5.574 10 Si 0.788 3.212 11 H -0.192 1.192 12 H -0.209 1.209 13 H -0.192 1.192 14 N -0.319 5.319 15 C 0.015 3.985 16 H 0.072 0.928 17 C -0.168 4.168 18 C -0.182 4.182 19 C -0.124 4.124 20 C -0.148 4.148 21 C -0.155 4.155 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.067 0.933 27 H -0.010 1.010 28 H 0.020 0.980 29 H 0.069 0.931 30 H 0.166 0.834 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.137 2.214 12.876 16.537 hybrid contribution 0.141 -0.035 -1.012 1.023 sum -9.996 2.179 11.864 15.666 Atomic orbital electron populations 1.22381 0.95189 1.02643 1.02410 1.21527 0.93400 0.96650 0.90379 0.92950 1.21461 0.96493 0.99147 0.95539 1.18782 0.92259 0.93481 0.94988 1.21802 0.92564 1.34467 1.09442 0.92568 1.25995 0.97382 0.96509 1.00099 1.70134 1.02527 1.45631 1.39095 0.85538 0.76970 0.79271 0.79465 1.19179 1.20885 1.19176 1.60371 1.58503 1.09747 1.03277 1.20305 0.93908 0.93539 0.90768 0.92796 1.22008 0.97956 0.99604 0.97251 1.22144 0.98894 1.01231 0.95895 1.20491 0.97259 1.01419 0.93227 1.21574 0.95496 0.99550 0.98226 1.21764 1.02396 0.98263 0.93048 0.91806 0.91614 0.91848 0.93233 0.93339 1.01038 0.97966 0.93089 0.83393 0.91675 0.88745 0.89492 0.90832 0.91362 0.89301 0.89912 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.30 9.15 71.98 0.66 -3.64 16 2 C 0.09 3.15 2.39 44.92 0.11 3.26 16 3 H 0.05 2.01 7.42 -2.38 -0.02 1.99 16 4 C -0.09 -3.82 4.83 30.60 0.15 -3.68 16 5 C 0.04 2.37 4.86 29.85 0.15 2.52 16 6 C -0.54 -32.81 9.11 25.60 0.23 -32.57 16 7 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 8 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 9 N -0.93 -59.90 13.29 21.45 0.28 -59.61 16 10 Si 0.96 46.23 29.54 68.60 2.03 48.26 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 13 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 14 N -0.69 -23.07 5.49 -474.30 -2.60 -25.67 16 15 C 0.12 3.59 2.57 43.98 0.11 3.70 16 16 H 0.05 1.46 7.10 -2.38 -0.02 1.44 16 17 C -0.15 -5.15 9.05 27.22 0.25 -4.90 16 18 C -0.16 -4.84 9.80 27.22 0.27 -4.57 16 19 C -0.09 -1.88 6.11 29.66 0.18 -1.70 16 20 C -0.11 -2.05 6.01 30.73 0.18 -1.87 16 21 C -0.12 -2.63 5.26 30.73 0.16 -2.46 16 22 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 23 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 24 H 0.06 1.40 7.42 -2.39 -0.02 1.38 16 25 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.05 2.03 8.14 -2.39 -0.02 2.02 16 27 H -0.03 -1.79 8.14 -2.39 -0.02 -1.81 16 28 H 0.00 0.12 7.75 -2.38 -0.02 0.10 16 29 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 30 H 0.35 10.07 8.09 -89.69 -0.73 9.34 16 31 H 0.06 2.75 7.81 -2.91 -0.02 2.72 16 32 H 0.09 2.83 8.06 -2.91 -0.02 2.81 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 1.20 8.12 -2.39 -0.02 1.18 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 1.57 8.12 -2.38 -0.02 1.55 16 Total: -1.00 -69.37 303.44 2.89 -66.48 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.27 Total: 16.15 kcal Atomic # 6 Polarization: -48.51 SS G_CDS: 2.91 Total: -45.61 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -2.32 Total: -85.28 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -69.37 2.89 -66.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486826.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.588 kcal (2) G-P(sol) polarization free energy of solvation -69.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds