Wall clock time and date at job start Sun Mar 29 2020 21:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.53009 * 109.46984 * 174.99905 * 4 2 1 6 6 C 1.50699 * 109.47239 * 180.02562 * 5 4 2 7 7 H 1.07994 * 119.99756 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99983 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99651 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00198 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47108 * 60.00138 * 10 8 6 12 12 H 1.48502 * 109.47374 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47362 * 300.00520 * 10 8 6 14 14 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 15 15 C 1.46897 * 111.00133 * 275.00091 * 14 2 1 16 16 H 1.08999 * 115.54744 * 9.41141 * 15 14 2 17 17 C 1.52999 * 117.49718 * 223.75147 * 15 14 2 18 18 C 1.53002 * 117.50181 * 155.09033 * 15 14 2 19 19 H 1.08996 * 117.49619 * 359.97438 * 18 15 14 20 20 C 1.52992 * 117.49714 * 214.97670 * 18 15 14 21 21 C 1.53004 * 117.49772 * 128.61917 * 20 18 15 22 22 C 1.52995 * 60.00068 * 252.50962 * 21 20 18 23 23 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 27 27 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 28 28 H 1.08999 * 109.47112 * 300.00392 * 5 4 2 29 29 H 1.09001 * 109.46642 * 60.00139 * 5 4 2 30 30 H 0.97001 * 119.99673 * 179.97438 * 9 8 6 31 31 H 1.00901 * 110.99931 * 151.04418 * 14 2 1 32 32 H 1.09006 * 117.49938 * 359.97438 * 17 15 14 33 33 H 1.08997 * 117.50093 * 145.02064 * 17 15 14 34 34 H 1.08994 * 115.55468 * 274.32713 * 20 18 15 35 35 H 1.09002 * 117.49858 * 359.97438 * 21 20 18 36 36 H 1.09006 * 117.49831 * 145.02036 * 21 20 18 37 37 H 1.09002 * 117.49796 * 252.51180 * 22 21 20 38 38 H 1.08997 * 117.51962 * 107.48122 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0671 -1.3232 -2.5446 7 1 3.3685 -1.8030 -3.2140 8 6 5.4183 -1.3593 -2.8165 9 7 6.2688 -0.7746 -2.0015 10 14 6.0409 -2.2398 -4.3417 11 1 5.4482 -1.6142 -5.5511 12 1 7.5208 -2.1339 -4.4051 13 1 5.6486 -3.6708 -4.2820 14 7 2.0197 -0.6925 1.1994 15 6 2.0825 0.2225 2.3469 16 1 1.6211 1.1984 2.1957 17 6 3.3281 0.1598 3.2331 18 6 1.9952 -0.3913 3.7456 19 1 1.8907 -1.4740 3.8144 20 6 1.2671 0.4119 4.8253 21 6 0.1741 -0.3037 5.6216 22 6 -0.2044 0.7520 4.5810 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.7517 -1.7715 -1.2056 27 1 1.6053 -0.2617 -2.1370 28 1 3.8532 0.4369 -1.3574 29 1 3.9994 -1.0729 -0.4261 30 1 7.2195 -0.8003 -2.1926 31 1 2.9174 -1.1205 1.0287 32 1 4.1009 -0.5608 2.9649 33 1 3.6858 1.0942 3.6654 34 1 1.8733 1.1488 5.3520 35 1 -0.0266 -1.3466 5.3761 36 1 0.0611 -0.0376 6.6727 37 1 -0.5664 1.7127 4.9474 38 1 -0.6538 0.4040 3.6510 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487295.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:22 Heat of formation + Delta-G solvation = 26.057815 kcal Electronic energy + Delta-G solvation = -15135.302612 eV Core-core repulsion = 12785.319408 eV Total energy + Delta-G solvation = -2349.983203 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.75797 -36.73091 -34.67471 -32.83838 -29.91476 -28.64050 -25.09300 -23.56135 -22.46390 -21.69137 -20.99626 -19.89783 -19.31836 -16.37041 -15.83976 -15.59004 -14.85388 -14.57878 -14.39390 -13.22562 -12.94075 -12.75882 -12.48375 -12.06943 -11.78997 -11.59473 -11.39338 -11.26490 -11.23340 -10.99083 -10.90596 -10.68175 -10.50134 -10.36223 -9.99751 -9.71137 -9.50510 -9.26402 -9.03052 -8.35284 -7.76654 -6.00506 -4.02762 3.33481 3.37742 3.40469 3.64196 4.13242 4.39618 4.45942 4.81867 4.89793 4.99461 5.26575 5.27918 5.35576 5.48724 5.56378 5.57257 5.60697 5.80752 5.83219 5.86304 6.01114 6.07629 6.11111 6.19760 6.27195 6.38384 6.42520 6.52841 6.59252 6.91562 7.08700 7.56395 7.62041 7.80336 7.90048 7.99480 8.42354 9.03768 9.61420 11.10643 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.044300 B = 0.005146 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.896582 B = 5439.576638 C = 5877.410874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.084 3.916 3 H 0.040 0.960 4 C -0.116 4.116 5 C 0.021 3.979 6 C -0.520 4.520 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 N -0.657 5.657 15 C 0.042 3.958 16 H 0.104 0.896 17 C -0.200 4.200 18 C -0.121 4.121 19 H 0.106 0.894 20 C -0.119 4.119 21 C -0.178 4.178 22 C -0.178 4.178 23 H 0.044 0.956 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.013 0.987 29 H 0.015 0.985 30 H 0.261 0.739 31 H 0.355 0.645 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.123 2.914 11.786 15.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.025 4.025 3 H 0.058 0.942 4 C -0.154 4.154 5 C -0.016 4.016 6 C -0.559 4.559 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.720 3.280 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 N -0.291 5.291 15 C -0.069 4.069 16 H 0.121 0.879 17 C -0.239 4.239 18 C -0.141 4.141 19 H 0.124 0.876 20 C -0.138 4.138 21 C -0.215 4.215 22 C -0.215 4.215 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.031 0.969 29 H 0.033 0.967 30 H 0.070 0.930 31 H 0.178 0.822 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.544 2.684 11.932 16.147 hybrid contribution 1.291 0.076 -0.975 1.620 sum -9.252 2.759 10.957 14.604 Atomic orbital electron populations 1.21801 0.95727 1.01679 1.00167 1.21630 0.94479 0.96166 0.90210 0.94224 1.21846 0.99723 0.99445 0.94346 1.19122 0.88737 0.96893 0.96865 1.21206 0.91961 1.34386 1.08317 0.92722 1.25020 0.97069 0.95594 0.96703 1.69954 1.02403 1.44089 1.37064 0.86660 0.77575 0.80270 0.83513 1.20271 1.21312 1.20215 1.60320 1.34082 1.30859 1.03791 1.22508 1.00023 0.96075 0.88297 0.87873 1.23564 0.91775 1.02980 1.05534 1.22013 0.99013 0.98831 0.94206 0.87624 1.21734 0.90543 1.01720 0.99769 1.22949 1.03815 0.98089 0.96671 1.22949 0.97932 0.99615 1.00975 0.93714 0.93054 0.92462 0.92489 0.92648 0.96912 0.96702 0.92982 0.82195 0.88422 0.89080 0.88083 0.88784 0.89213 0.89283 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.42 37.16 0.35 -1.68 16 2 C 0.08 1.48 2.55 -67.71 -0.17 1.31 16 3 H 0.04 0.72 7.74 -51.93 -0.40 0.32 16 4 C -0.12 -2.40 4.74 -26.73 -0.13 -2.52 16 5 C 0.02 0.54 4.80 -27.88 -0.13 0.40 16 6 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 7 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 9 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 10 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 N -0.66 -11.25 6.59 -99.74 -0.66 -11.91 16 15 C 0.04 0.63 5.67 -67.71 -0.38 0.25 16 16 H 0.10 1.51 7.77 -51.93 -0.40 1.11 16 17 C -0.20 -2.80 9.95 -26.69 -0.27 -3.07 16 18 C -0.12 -1.60 5.80 -90.58 -0.53 -2.12 16 19 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 20 C -0.12 -1.34 5.87 -90.62 -0.53 -1.87 16 21 C -0.18 -1.78 10.25 -26.73 -0.27 -2.05 16 22 C -0.18 -1.85 10.18 -26.73 -0.27 -2.12 16 23 H 0.04 0.61 8.07 -51.93 -0.42 0.19 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.01 0.39 6.43 -51.93 -0.33 0.06 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.35 6.74 6.26 -39.29 -0.25 6.50 16 32 H 0.10 1.46 8.09 -51.93 -0.42 1.04 16 33 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 312.62 15.07 4.71 4.71 Total: -1.00 -28.88 312.62 -9.81 -38.70 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.84 Total: 4.91 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: -2.75 Total: -27.00 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.08 Total: -38.03 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.88 -9.81 -38.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487295.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.755 kcal (2) G-P(sol) polarization free energy of solvation -28.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds