Wall clock time and date at job start Sun Mar 29 2020 21:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.53009 * 109.46984 * 174.99905 * 4 2 1 6 6 C 1.50699 * 109.47239 * 180.02562 * 5 4 2 7 7 H 1.07994 * 119.99756 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99983 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99651 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00198 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47108 * 60.00138 * 10 8 6 12 12 H 1.48502 * 109.47374 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47362 * 300.00520 * 10 8 6 14 14 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 15 15 C 1.46897 * 111.00133 * 275.00091 * 14 2 1 16 16 H 1.08999 * 115.54744 * 9.41141 * 15 14 2 17 17 C 1.52999 * 117.49718 * 223.75147 * 15 14 2 18 18 C 1.53002 * 117.50181 * 155.09033 * 15 14 2 19 19 H 1.08996 * 117.49619 * 359.97438 * 18 15 14 20 20 C 1.52992 * 117.49714 * 214.97670 * 18 15 14 21 21 C 1.53004 * 117.49772 * 128.61917 * 20 18 15 22 22 C 1.52995 * 60.00068 * 252.50962 * 21 20 18 23 23 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 27 27 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 28 28 H 1.08999 * 109.47112 * 300.00392 * 5 4 2 29 29 H 1.09001 * 109.46642 * 60.00139 * 5 4 2 30 30 H 0.97001 * 119.99673 * 179.97438 * 9 8 6 31 31 H 1.00901 * 110.99931 * 151.04418 * 14 2 1 32 32 H 1.09006 * 117.49938 * 359.97438 * 17 15 14 33 33 H 1.08997 * 117.50093 * 145.02064 * 17 15 14 34 34 H 1.08994 * 115.55468 * 274.32713 * 20 18 15 35 35 H 1.09002 * 117.49858 * 359.97438 * 21 20 18 36 36 H 1.09006 * 117.49831 * 145.02036 * 21 20 18 37 37 H 1.09002 * 117.49796 * 252.51180 * 22 21 20 38 38 H 1.08997 * 117.51962 * 107.48122 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0671 -1.3232 -2.5446 7 1 3.3685 -1.8030 -3.2140 8 6 5.4183 -1.3593 -2.8165 9 7 6.2688 -0.7746 -2.0015 10 14 6.0409 -2.2398 -4.3417 11 1 5.4482 -1.6142 -5.5511 12 1 7.5208 -2.1339 -4.4051 13 1 5.6486 -3.6708 -4.2820 14 7 2.0197 -0.6925 1.1994 15 6 2.0825 0.2225 2.3469 16 1 1.6211 1.1984 2.1957 17 6 3.3281 0.1598 3.2331 18 6 1.9952 -0.3913 3.7456 19 1 1.8907 -1.4740 3.8144 20 6 1.2671 0.4119 4.8253 21 6 0.1741 -0.3037 5.6216 22 6 -0.2044 0.7520 4.5810 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.7517 -1.7715 -1.2056 27 1 1.6053 -0.2617 -2.1370 28 1 3.8532 0.4369 -1.3574 29 1 3.9994 -1.0729 -0.4261 30 1 7.2195 -0.8003 -2.1926 31 1 2.9174 -1.1205 1.0287 32 1 4.1009 -0.5608 2.9649 33 1 3.6858 1.0942 3.6654 34 1 1.8733 1.1488 5.3520 35 1 -0.0266 -1.3466 5.3761 36 1 0.0611 -0.0376 6.6727 37 1 -0.5664 1.7127 4.9474 38 1 -0.6538 0.4040 3.6510 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487295.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:22 Heat of formation + Delta-G solvation = 10.506449 kcal Electronic energy + Delta-G solvation = -15135.976970 eV Core-core repulsion = 12785.319408 eV Total energy + Delta-G solvation = -2350.657561 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.88278 -37.98942 -35.97909 -34.80744 -31.75129 -29.98465 -27.03502 -24.57039 -23.47707 -23.21709 -22.30136 -21.24922 -20.53967 -18.51040 -17.08180 -16.63930 -16.53948 -16.16643 -15.54368 -14.72371 -14.44620 -14.30947 -13.95874 -13.56834 -13.14980 -13.04245 -12.81258 -12.62454 -12.59427 -12.36866 -12.22999 -12.19373 -11.85994 -11.64348 -11.55813 -11.33140 -10.97389 -10.91320 -10.56195 -10.52912 -9.08437 -8.20627 -6.31521 1.39411 1.42129 1.50054 2.40493 2.65130 3.10951 3.12236 3.22787 3.78997 3.95989 4.03649 4.11364 4.22111 4.23241 4.35442 4.46245 4.52042 4.61721 4.73658 4.78688 4.84067 4.90560 5.00026 5.05545 5.09210 5.10722 5.21920 5.28905 5.33059 5.40518 5.43911 5.52500 5.70523 5.83346 6.24026 6.28055 6.39317 6.84746 7.37684 8.90542 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.044300 B = 0.005146 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.896582 B = 5439.576638 C = 5877.410874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.089 3.911 3 H 0.030 0.970 4 C -0.103 4.103 5 C 0.028 3.972 6 C -0.545 4.545 7 H 0.058 0.942 8 C 0.002 3.998 9 N -0.931 5.931 10 Si 0.963 3.037 11 H -0.267 1.267 12 H -0.283 1.283 13 H -0.267 1.267 14 N -0.660 5.660 15 C 0.027 3.973 16 H 0.109 0.891 17 C -0.204 4.204 18 C -0.101 4.101 19 H 0.097 0.903 20 C -0.132 4.132 21 C -0.170 4.170 22 C -0.175 4.175 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.059 0.941 28 H -0.016 1.016 29 H -0.003 1.003 30 H 0.263 0.737 31 H 0.339 0.661 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.306 2.886 12.058 16.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.020 4.020 3 H 0.048 0.952 4 C -0.141 4.141 5 C -0.009 4.009 6 C -0.583 4.583 7 H 0.077 0.923 8 C -0.196 4.196 9 N -0.572 5.572 10 Si 0.787 3.213 11 H -0.192 1.192 12 H -0.208 1.208 13 H -0.192 1.192 14 N -0.292 5.292 15 C -0.084 4.084 16 H 0.127 0.873 17 C -0.243 4.243 18 C -0.121 4.121 19 H 0.115 0.885 20 C -0.150 4.150 21 C -0.207 4.207 22 C -0.212 4.212 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.002 0.998 29 H 0.016 0.984 30 H 0.072 0.928 31 H 0.160 0.840 32 H 0.100 0.900 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.109 0.891 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.754 2.660 12.213 17.158 hybrid contribution 1.676 0.098 -1.024 1.967 sum -10.078 2.758 11.189 15.309 Atomic orbital electron populations 1.21709 0.93062 1.02084 1.01553 1.21569 0.96435 0.95013 0.89014 0.95154 1.21665 0.96222 0.99834 0.96363 1.18991 0.92072 0.94472 0.95377 1.21669 0.92597 1.34737 1.09311 0.92345 1.25946 0.97317 0.96285 1.00044 1.70087 1.02744 1.45313 1.39011 0.85534 0.77011 0.79258 0.79453 1.19229 1.20829 1.19227 1.60437 1.33022 1.31465 1.04231 1.22598 1.01204 0.96271 0.88327 0.87334 1.23576 0.91667 1.03396 1.05637 1.21967 0.98028 0.98574 0.93488 0.88529 1.21737 0.91066 1.02379 0.99799 1.23033 1.02235 0.97857 0.97575 1.22985 0.96802 1.00559 1.00827 0.92243 0.91765 0.92504 0.92699 0.92231 0.99760 0.98433 0.92829 0.83990 0.89975 0.87695 0.87083 0.89129 0.87367 0.87675 0.89479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.55 9.42 71.98 0.68 -2.87 16 2 C 0.09 3.12 2.55 44.92 0.11 3.23 16 3 H 0.03 1.12 7.74 -2.39 -0.02 1.10 16 4 C -0.10 -4.30 4.74 30.60 0.15 -4.16 16 5 C 0.03 1.48 4.80 29.85 0.14 1.62 16 6 C -0.55 -31.35 9.11 25.60 0.23 -31.11 16 7 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 8 C 0.00 0.12 5.46 84.65 0.46 0.58 16 9 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 10 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 13 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 14 N -0.66 -22.86 6.59 -469.47 -3.09 -25.95 16 15 C 0.03 0.79 5.67 44.92 0.25 1.05 16 16 H 0.11 3.09 7.77 -2.39 -0.02 3.07 16 17 C -0.20 -5.75 9.95 30.62 0.30 -5.44 16 18 C -0.10 -2.59 5.80 -10.77 -0.06 -2.66 16 19 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 20 C -0.13 -2.69 5.87 -10.79 -0.06 -2.76 16 21 C -0.17 -2.99 10.25 30.59 0.31 -2.67 16 22 C -0.17 -3.23 10.18 30.59 0.31 -2.92 16 23 H 0.06 1.50 8.07 -2.39 -0.02 1.48 16 24 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 28 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 29 H 0.00 -0.14 6.43 -2.39 -0.02 -0.16 16 30 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 31 H 0.34 13.43 6.26 -89.69 -0.56 12.87 16 32 H 0.08 2.56 8.09 -2.38 -0.02 2.54 16 33 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -61.77 312.62 2.50 -59.28 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.44 Total: 24.77 kcal Atomic # 6 Polarization: -50.95 SS G_CDS: 2.83 Total: -48.11 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -2.81 Total: -82.54 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -61.77 2.50 -59.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487295.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.785 kcal (2) G-P(sol) polarization free energy of solvation -61.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds