Wall clock time and date at job start Sun Mar 29 2020 21:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46371 * 2 1 4 4 C 1.52992 * 109.47293 * 239.99959 * 2 1 3 5 5 C 1.53001 * 109.47220 * 174.99420 * 4 2 1 6 6 C 1.50696 * 109.47042 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00383 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99940 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99978 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99885 * 0.02562 * 8 6 5 11 11 H 1.48491 * 109.47023 * 90.00375 * 10 8 6 12 12 H 1.48504 * 109.46793 * 209.99931 * 10 8 6 13 13 H 1.48500 * 109.47143 * 330.00017 * 10 8 6 14 14 N 1.46901 * 109.47189 * 119.99388 * 2 1 3 15 15 C 1.46891 * 111.00195 * 275.00291 * 14 2 1 16 16 H 1.09005 * 115.55457 * 350.66828 * 15 14 2 17 17 C 1.53006 * 117.49977 * 136.38092 * 15 14 2 18 18 C 1.52999 * 60.00089 * 107.48871 * 17 15 14 19 19 H 1.09002 * 117.49803 * 107.49109 * 18 17 15 20 20 C 1.53005 * 117.51737 * 252.51928 * 18 17 15 21 21 C 1.52991 * 117.49709 * 197.46248 * 20 18 17 22 22 C 1.53003 * 117.49479 * 128.80286 * 20 18 17 23 23 H 1.09003 * 109.47550 * 299.99761 * 1 2 3 24 24 H 1.09000 * 109.47335 * 60.00298 * 1 2 3 25 25 H 1.09005 * 109.46742 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47089 * 295.00081 * 4 2 1 27 27 H 1.09000 * 109.47166 * 54.99485 * 4 2 1 28 28 H 1.08997 * 109.47629 * 300.00330 * 5 4 2 29 29 H 1.08997 * 109.46775 * 60.00448 * 5 4 2 30 30 H 0.96995 * 119.99802 * 179.97438 * 9 8 6 31 31 H 1.00902 * 110.99700 * 38.96402 * 14 2 1 32 32 H 1.09003 * 117.49619 * 359.97438 * 17 15 14 33 33 H 1.08995 * 117.50015 * 214.97712 * 17 15 14 34 34 H 1.09001 * 115.54773 * 343.13845 * 20 18 17 35 35 H 1.09005 * 117.50308 * 0.02562 * 21 20 18 36 36 H 1.09002 * 117.50306 * 145.02194 * 21 20 18 37 37 H 1.08999 * 117.49758 * 214.97713 * 22 20 18 38 38 H 1.08997 * 117.49980 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6131 -1.3137 6 6 4.0672 -1.3241 -2.5438 7 1 3.3688 -1.8046 -3.2129 8 6 5.4186 -1.3611 -2.8150 9 7 5.8570 -1.9811 -3.8888 10 14 6.6267 -0.5306 -1.6573 11 1 7.0613 -1.4982 -0.6182 12 1 7.8090 -0.0656 -2.4261 13 1 5.9701 0.6321 -1.0075 14 7 2.0197 -0.6924 1.1995 15 6 2.0824 0.2227 2.3468 16 1 1.9217 1.2762 2.1174 17 6 1.5680 -0.2943 3.6919 18 6 3.0703 -0.1138 3.4657 19 1 3.5592 0.7183 3.9725 20 6 3.9177 -1.3774 3.3036 21 6 5.4305 -1.2418 3.4868 22 6 4.8446 -1.4552 2.0888 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.7517 -1.7714 -1.2055 27 1 1.6053 -0.2618 -2.1369 28 1 3.8532 0.4371 -1.3573 29 1 3.9995 -1.0726 -0.4260 30 1 6.8076 -2.0069 -4.0798 31 1 1.4496 -1.4979 1.4101 32 1 1.1826 -1.3134 3.7252 33 1 1.0685 0.4189 4.3475 34 1 3.4508 -2.3029 3.6405 35 1 5.8222 -0.2524 3.7233 36 1 5.9592 -2.0782 3.9440 37 1 4.9880 -2.4321 1.6269 38 1 4.8505 -0.6065 1.4050 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487298.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:26 Heat of formation + Delta-G solvation = 33.949528 kcal Electronic energy + Delta-G solvation = -15775.456059 eV Core-core repulsion = 13425.815065 eV Total energy + Delta-G solvation = -2349.640993 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.84445 -36.45126 -34.67563 -32.72367 -30.38066 -28.53554 -25.23477 -23.52676 -22.01978 -21.68805 -21.05425 -19.80352 -19.25903 -16.55845 -15.82496 -15.48647 -14.62425 -14.23410 -14.12495 -13.42662 -13.19475 -12.82147 -12.54471 -12.34311 -12.05022 -11.62562 -11.40865 -11.34776 -11.01626 -10.92010 -10.78605 -10.51820 -10.35087 -9.91965 -9.71875 -9.56664 -9.46954 -9.22954 -8.95632 -8.38401 -7.77579 -5.91607 -3.87148 3.42196 3.48450 3.54016 3.82202 4.24398 4.32176 4.58226 4.87171 4.99671 5.18526 5.29137 5.38884 5.41576 5.44866 5.52514 5.55977 5.65614 5.71419 5.76404 5.89457 5.96140 6.04438 6.22587 6.27495 6.32316 6.41147 6.53912 6.59603 6.74428 6.76078 7.15097 7.43770 7.58342 7.71480 7.79511 7.97934 8.69194 9.15004 9.72879 11.22365 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.022152 B = 0.009933 C = 0.007302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.697003 B = 2818.328201 C = 3833.546792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.082 3.918 3 H 0.072 0.928 4 C -0.090 4.090 5 C -0.009 4.009 6 C -0.515 4.515 7 H 0.067 0.933 8 C 0.064 3.936 9 N -0.911 5.911 10 Si 0.878 3.122 11 H -0.274 1.274 12 H -0.293 1.293 13 H -0.265 1.265 14 N -0.634 5.634 15 C 0.039 3.961 16 H 0.103 0.897 17 C -0.205 4.205 18 C -0.116 4.116 19 H 0.099 0.901 20 C -0.112 4.112 21 C -0.196 4.196 22 C -0.142 4.142 23 H 0.045 0.955 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.005 0.995 29 H 0.034 0.966 30 H 0.260 0.740 31 H 0.339 0.661 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.708 4.058 15.315 17.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.027 4.027 3 H 0.090 0.910 4 C -0.128 4.128 5 C -0.046 4.046 6 C -0.553 4.553 7 H 0.085 0.915 8 C -0.136 4.136 9 N -0.551 5.551 10 Si 0.706 3.294 11 H -0.200 1.200 12 H -0.220 1.220 13 H -0.190 1.190 14 N -0.263 5.263 15 C -0.072 4.072 16 H 0.121 0.879 17 C -0.244 4.244 18 C -0.136 4.136 19 H 0.117 0.883 20 C -0.131 4.131 21 C -0.233 4.233 22 C -0.178 4.178 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.023 0.977 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.159 0.841 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.889 4.084 15.018 17.020 hybrid contribution -0.205 0.456 0.762 0.912 sum -7.093 4.541 15.780 17.887 Atomic orbital electron populations 1.22552 0.98257 1.01657 1.01344 1.21854 0.91301 0.98192 0.91355 0.91016 1.21446 0.99078 0.98974 0.93300 1.19537 0.91465 0.96097 0.97547 1.21273 0.92751 1.33731 1.07577 0.91513 1.25020 0.98436 0.95077 0.95088 1.69935 1.14352 1.44160 1.26613 0.86798 0.80573 0.80782 0.81222 1.19966 1.22003 1.18991 1.60198 1.56438 1.07922 1.01725 1.22516 1.02506 0.96297 0.85926 0.87897 1.23514 0.97079 1.02274 1.01564 1.22008 0.90333 0.98346 1.02880 0.88286 1.21391 0.90387 0.96766 1.04510 1.23021 0.95671 1.02110 1.02528 1.22884 1.01054 1.03847 0.90059 0.93592 0.92273 0.92732 0.92938 0.92968 0.97708 0.94743 0.93036 0.84121 0.88917 0.89348 0.88677 0.89537 0.89568 0.89052 0.88019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 9.16 37.16 0.34 -1.94 16 2 C 0.08 1.28 2.55 -67.72 -0.17 1.11 16 3 H 0.07 1.15 7.57 -51.93 -0.39 0.76 16 4 C -0.09 -1.77 4.83 -26.73 -0.13 -1.90 16 5 C -0.01 -0.22 3.93 -27.88 -0.11 -0.33 16 6 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 7 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 8 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 9 N -0.91 -28.88 13.96 55.43 0.77 -28.11 16 10 Si 0.88 22.51 27.47 -169.99 -4.67 17.84 16 11 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 13 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 14 N -0.63 -9.31 4.75 -99.74 -0.47 -9.78 16 15 C 0.04 0.50 6.02 -67.71 -0.41 0.09 16 16 H 0.10 1.29 7.60 -51.93 -0.39 0.90 16 17 C -0.21 -2.24 9.95 -26.73 -0.27 -2.50 16 18 C -0.12 -1.47 5.87 -90.61 -0.53 -2.00 16 19 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 20 C -0.11 -1.55 5.47 -90.62 -0.50 -2.04 16 21 C -0.20 -2.72 10.25 -26.70 -0.27 -3.00 16 22 C -0.14 -2.36 8.96 -26.69 -0.24 -2.60 16 23 H 0.04 0.53 8.07 -51.93 -0.42 0.11 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.00 0.12 7.20 -51.93 -0.37 -0.26 16 29 H 0.03 0.83 5.54 -51.93 -0.29 0.54 16 30 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 31 H 0.34 4.65 8.26 -39.29 -0.32 4.33 16 32 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.10 1.95 7.13 -51.93 -0.37 1.58 16 LS Contribution 306.22 15.07 4.61 4.61 Total: -1.00 -30.58 306.22 -9.27 -39.84 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -6.80 Total: 4.25 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: -2.71 Total: -28.66 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.30 Total: -37.89 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.67 Total: 17.84 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.58 -9.27 -39.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487298.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.794 kcal (2) G-P(sol) polarization free energy of solvation -30.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds