Wall clock time and date at job start Sun Mar 29 2020 21:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46371 * 2 1 4 4 C 1.52992 * 109.47293 * 239.99959 * 2 1 3 5 5 C 1.53001 * 109.47220 * 174.99420 * 4 2 1 6 6 C 1.50696 * 109.47042 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00383 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99940 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99978 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99885 * 0.02562 * 8 6 5 11 11 H 1.48491 * 109.47023 * 90.00375 * 10 8 6 12 12 H 1.48504 * 109.46793 * 209.99931 * 10 8 6 13 13 H 1.48500 * 109.47143 * 330.00017 * 10 8 6 14 14 N 1.46901 * 109.47189 * 119.99388 * 2 1 3 15 15 C 1.46891 * 111.00195 * 275.00291 * 14 2 1 16 16 H 1.09005 * 115.55457 * 350.66828 * 15 14 2 17 17 C 1.53006 * 117.49977 * 136.38092 * 15 14 2 18 18 C 1.52999 * 60.00089 * 107.48871 * 17 15 14 19 19 H 1.09002 * 117.49803 * 107.49109 * 18 17 15 20 20 C 1.53005 * 117.51737 * 252.51928 * 18 17 15 21 21 C 1.52991 * 117.49709 * 197.46248 * 20 18 17 22 22 C 1.53003 * 117.49479 * 128.80286 * 20 18 17 23 23 H 1.09003 * 109.47550 * 299.99761 * 1 2 3 24 24 H 1.09000 * 109.47335 * 60.00298 * 1 2 3 25 25 H 1.09005 * 109.46742 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47089 * 295.00081 * 4 2 1 27 27 H 1.09000 * 109.47166 * 54.99485 * 4 2 1 28 28 H 1.08997 * 109.47629 * 300.00330 * 5 4 2 29 29 H 1.08997 * 109.46775 * 60.00448 * 5 4 2 30 30 H 0.96995 * 119.99802 * 179.97438 * 9 8 6 31 31 H 1.00902 * 110.99700 * 38.96402 * 14 2 1 32 32 H 1.09003 * 117.49619 * 359.97438 * 17 15 14 33 33 H 1.08995 * 117.50015 * 214.97712 * 17 15 14 34 34 H 1.09001 * 115.54773 * 343.13845 * 20 18 17 35 35 H 1.09005 * 117.50308 * 0.02562 * 21 20 18 36 36 H 1.09002 * 117.50306 * 145.02194 * 21 20 18 37 37 H 1.08999 * 117.49758 * 214.97713 * 22 20 18 38 38 H 1.08997 * 117.49980 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6131 -1.3137 6 6 4.0672 -1.3241 -2.5438 7 1 3.3688 -1.8046 -3.2129 8 6 5.4186 -1.3611 -2.8150 9 7 5.8570 -1.9811 -3.8888 10 14 6.6267 -0.5306 -1.6573 11 1 7.0613 -1.4982 -0.6182 12 1 7.8090 -0.0656 -2.4261 13 1 5.9701 0.6321 -1.0075 14 7 2.0197 -0.6924 1.1995 15 6 2.0824 0.2227 2.3468 16 1 1.9217 1.2762 2.1174 17 6 1.5680 -0.2943 3.6919 18 6 3.0703 -0.1138 3.4657 19 1 3.5592 0.7183 3.9725 20 6 3.9177 -1.3774 3.3036 21 6 5.4305 -1.2418 3.4868 22 6 4.8446 -1.4552 2.0888 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.7517 -1.7714 -1.2055 27 1 1.6053 -0.2618 -2.1369 28 1 3.8532 0.4371 -1.3573 29 1 3.9995 -1.0726 -0.4260 30 1 6.8076 -2.0069 -4.0798 31 1 1.4496 -1.4979 1.4101 32 1 1.1826 -1.3134 3.7252 33 1 1.0685 0.4189 4.3475 34 1 3.4508 -2.3029 3.6405 35 1 5.8222 -0.2524 3.7233 36 1 5.9592 -2.0782 3.9440 37 1 4.9880 -2.4321 1.6269 38 1 4.8505 -0.6065 1.4050 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487298.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:26 Heat of formation + Delta-G solvation = 16.214319 kcal Electronic energy + Delta-G solvation = -15776.225115 eV Core-core repulsion = 13425.815065 eV Total energy + Delta-G solvation = -2350.410049 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.89795 -37.71593 -35.96521 -34.74996 -32.21381 -29.71698 -27.07050 -24.57061 -23.27231 -22.75391 -22.58135 -21.36911 -20.31489 -18.79840 -16.92873 -16.56924 -16.30415 -15.76123 -15.52759 -14.78021 -14.58342 -14.35400 -14.08723 -13.80723 -13.22282 -13.13285 -12.87734 -12.63409 -12.43899 -12.19106 -11.98853 -11.88597 -11.77296 -11.52227 -11.40948 -11.30514 -11.09537 -10.82804 -10.65431 -10.36424 -8.84750 -8.25731 -6.26523 1.36167 1.38019 1.50004 2.39058 2.82715 3.11180 3.16497 3.27888 3.86666 4.02803 4.06876 4.13600 4.29288 4.33683 4.45228 4.49820 4.60269 4.67329 4.76526 4.82712 4.88168 4.96804 4.99843 5.03112 5.13896 5.22473 5.28125 5.36151 5.37325 5.41296 5.49711 5.64463 5.74453 5.84070 6.36073 6.38079 6.65526 6.82616 7.37497 8.91571 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.022152 B = 0.009933 C = 0.007302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.697003 B = 2818.328201 C = 3833.546792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.094 3.906 3 H 0.068 0.932 4 C -0.085 4.085 5 C 0.000 4.000 6 C -0.526 4.526 7 H 0.027 0.973 8 C 0.004 3.996 9 N -0.957 5.957 10 Si 0.947 3.053 11 H -0.264 1.264 12 H -0.289 1.289 13 H -0.251 1.251 14 N -0.650 5.650 15 C 0.026 3.974 16 H 0.108 0.892 17 C -0.177 4.177 18 C -0.129 4.129 19 H 0.108 0.892 20 C -0.097 4.097 21 C -0.183 4.183 22 C -0.171 4.171 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.000 1.000 29 H 0.038 0.962 30 H 0.263 0.737 31 H 0.344 0.656 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.399 5.246 18.317 20.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.016 4.016 3 H 0.087 0.913 4 C -0.123 4.123 5 C -0.038 4.038 6 C -0.564 4.564 7 H 0.045 0.955 8 C -0.192 4.192 9 N -0.598 5.598 10 Si 0.772 3.228 11 H -0.189 1.189 12 H -0.215 1.215 13 H -0.175 1.175 14 N -0.279 5.279 15 C -0.085 4.085 16 H 0.126 0.874 17 C -0.216 4.216 18 C -0.148 4.148 19 H 0.126 0.874 20 C -0.115 4.115 21 C -0.220 4.220 22 C -0.208 4.208 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.019 0.981 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.164 0.836 32 H 0.116 0.884 33 H 0.128 0.872 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.602 5.276 18.034 20.270 hybrid contribution -0.018 0.025 -0.239 0.241 sum -7.620 5.301 17.796 20.071 Atomic orbital electron populations 1.22416 0.95648 1.02257 1.02409 1.21570 0.93225 0.97062 0.89735 0.91346 1.21337 0.96053 0.99159 0.95780 1.19427 0.94553 0.94758 0.95037 1.21684 0.92446 1.33580 1.08728 0.95468 1.25954 1.00613 0.95833 0.96798 1.70085 1.15009 1.45979 1.28764 0.85701 0.77879 0.80230 0.79030 1.18854 1.21548 1.17455 1.60063 1.56961 1.08632 1.02253 1.22532 1.03759 0.96249 0.85962 0.87418 1.23532 0.95428 1.02927 0.99685 1.22093 0.91376 0.98068 1.03290 0.87395 1.21461 0.90662 0.97801 1.01592 1.23112 0.96071 1.03098 0.99710 1.22656 1.05306 1.01707 0.91111 0.91537 0.92153 0.92386 0.93805 0.93661 0.98144 0.94342 0.92797 0.83620 0.88429 0.87244 0.87962 0.88657 0.88280 0.90998 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.87 9.16 71.98 0.66 -3.21 16 2 C 0.09 2.77 2.55 44.91 0.11 2.89 16 3 H 0.07 2.08 7.57 -2.39 -0.02 2.06 16 4 C -0.09 -3.37 4.83 30.59 0.15 -3.22 16 5 C 0.00 -0.02 3.93 29.85 0.12 0.10 16 6 C -0.53 -31.75 9.66 25.60 0.25 -31.50 16 7 H 0.03 1.79 7.99 -2.91 -0.02 1.77 16 8 C 0.00 0.23 5.47 84.65 0.46 0.69 16 9 N -0.96 -62.48 13.96 21.45 0.30 -62.18 16 10 Si 0.95 47.12 27.47 68.60 1.88 49.01 16 11 H -0.26 -12.59 7.11 99.48 0.71 -11.89 16 12 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 13 H -0.25 -11.78 6.54 99.48 0.65 -11.13 16 14 N -0.65 -17.93 4.75 -469.47 -2.23 -20.16 16 15 C 0.03 0.59 6.02 44.92 0.27 0.86 16 16 H 0.11 2.37 7.60 -2.38 -0.02 2.36 16 17 C -0.18 -3.14 9.95 30.60 0.30 -2.83 16 18 C -0.13 -2.86 5.87 -10.79 -0.06 -2.92 16 19 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 20 C -0.10 -2.45 5.47 -10.79 -0.06 -2.51 16 21 C -0.18 -4.66 10.25 30.62 0.31 -4.34 16 22 C -0.17 -5.55 8.96 30.62 0.27 -5.28 16 23 H 0.07 1.28 8.07 -2.39 -0.02 1.26 16 24 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.06 1.30 8.13 -2.38 -0.02 1.28 16 26 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.00 0.01 7.20 -2.39 -0.02 -0.01 16 29 H 0.04 1.86 5.54 -2.39 -0.01 1.84 16 30 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 31 H 0.34 8.74 8.26 -89.69 -0.74 8.00 16 32 H 0.10 1.68 8.09 -2.39 -0.02 1.66 16 33 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 36 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.07 2.85 7.13 -2.39 -0.02 2.83 16 Total: -1.00 -67.58 306.22 2.96 -64.62 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.21 Total: 19.98 kcal Atomic # 6 Polarization: -54.07 SS G_CDS: 2.79 Total: -51.28 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -1.93 Total: -82.33 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.88 Total: 49.01 kcal Total: -67.58 2.96 -64.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487298.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.834 kcal (2) G-P(sol) polarization free energy of solvation -67.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds