Wall clock time and date at job start Sun Mar 29 2020 21:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47243 * 2 1 4 4 C 1.52992 * 109.47533 * 239.99334 * 2 1 3 5 5 C 1.53004 * 109.47319 * 175.00255 * 4 2 1 6 6 C 1.50700 * 109.47208 * 180.02562 * 5 4 2 7 7 H 1.08002 * 119.99770 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00083 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00147 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00278 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46986 * 270.00126 * 10 8 6 12 12 H 1.48496 * 109.47029 * 30.00143 * 10 8 6 13 13 H 1.48499 * 109.47352 * 149.99973 * 10 8 6 14 14 N 1.46904 * 109.46710 * 119.99613 * 2 1 3 15 15 C 1.46901 * 110.99769 * 275.00365 * 14 2 1 16 16 H 1.08992 * 115.55406 * 9.32817 * 15 14 2 17 17 C 1.53002 * 117.49531 * 223.61953 * 15 14 2 18 18 C 1.52998 * 59.99977 * 252.50932 * 17 15 14 19 19 H 1.08993 * 117.52064 * 252.51511 * 18 17 15 20 20 C 1.53006 * 117.49390 * 107.49385 * 18 17 15 21 21 C 1.53003 * 117.49487 * 180.02562 * 20 18 17 22 22 C 1.52996 * 117.50259 * 111.37985 * 20 18 17 23 23 H 1.08991 * 109.47767 * 300.00718 * 1 2 3 24 24 H 1.09004 * 109.46475 * 60.00748 * 1 2 3 25 25 H 1.08999 * 109.47481 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47364 * 55.00275 * 4 2 1 27 27 H 1.08998 * 109.47610 * 295.00337 * 4 2 1 28 28 H 1.08994 * 109.47074 * 60.00408 * 5 4 2 29 29 H 1.08998 * 109.47285 * 300.00244 * 5 4 2 30 30 H 0.97005 * 119.99661 * 359.97438 * 9 8 6 31 31 H 1.00895 * 111.00048 * 151.04913 * 14 2 1 32 32 H 1.09004 * 117.50156 * 0.02562 * 17 15 14 33 33 H 1.09004 * 117.50007 * 145.01945 * 17 15 14 34 34 H 1.08997 * 115.54967 * 325.69680 * 20 18 17 35 35 H 1.08996 * 117.49853 * 359.97438 * 21 20 18 36 36 H 1.08995 * 117.50136 * 145.01784 * 21 20 18 37 37 H 1.08997 * 117.49720 * 214.97824 * 22 20 18 38 38 H 1.09003 * 117.49572 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5650 -0.6134 -1.3134 6 6 4.0673 -1.3234 -2.5441 7 1 3.3688 -1.8032 -3.2136 8 6 5.4186 -1.3604 -2.8153 9 7 6.2692 -0.7766 -1.9998 10 14 6.0413 -2.2399 -4.3412 11 1 6.3205 -3.6612 -4.0140 12 1 5.0103 -2.1708 -5.4077 13 1 7.2880 -1.5868 -4.8149 14 7 2.0196 -0.6924 1.1995 15 6 2.0822 0.2227 2.3469 16 1 1.6221 1.1991 2.1953 17 6 3.3264 0.1579 3.2351 18 6 1.9926 -0.3908 3.7457 19 1 1.4735 0.1819 4.5141 20 6 1.8446 -1.9106 3.8423 21 6 0.5106 -2.4594 4.3524 22 6 1.7549 -2.5242 5.2410 23 1 -0.3634 0.5139 0.8898 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6056 -0.2619 -2.1369 27 1 1.7517 -1.7716 -1.2054 28 1 3.9995 -1.0729 -0.4257 29 1 3.8534 0.4368 -1.3571 30 1 5.9458 -0.3195 -1.2076 31 1 2.9172 -1.1204 1.0290 32 1 4.0986 -0.5635 2.9678 33 1 3.6852 1.0919 3.6678 34 1 2.3636 -2.4833 3.0738 35 1 -0.2614 -1.7377 4.6194 36 1 0.1521 -3.3933 3.9197 37 1 2.2148 -3.5007 5.3926 38 1 1.8018 -1.8451 6.0924 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487299.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:28 Heat of formation + Delta-G solvation = 7.246084 kcal Electronic energy + Delta-G solvation = -15297.824616 eV Core-core repulsion = 12947.025675 eV Total energy + Delta-G solvation = -2350.798941 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.93628 -38.00621 -36.18293 -35.03376 -31.56470 -29.96629 -26.64687 -24.62341 -23.74492 -23.20210 -22.47072 -21.38474 -20.43151 -18.93619 -17.11023 -16.91809 -16.10615 -15.71688 -15.56510 -14.99792 -14.73165 -14.33224 -14.16836 -13.61167 -13.32341 -13.04072 -12.72228 -12.59884 -12.56117 -12.32243 -12.08073 -11.96332 -11.93814 -11.86676 -11.61942 -11.50018 -11.00860 -10.63759 -10.55702 -10.31141 -9.11610 -8.70445 -6.40770 1.50900 1.60056 1.77895 2.55048 2.61103 3.11576 3.15186 3.30906 3.63171 3.91492 4.00838 4.02643 4.17285 4.31825 4.33725 4.40662 4.46265 4.51855 4.62648 4.70285 4.82148 4.83299 4.86995 4.96711 5.02840 5.05865 5.08083 5.24654 5.31040 5.34893 5.43066 5.46425 5.48472 5.99274 6.16370 6.23102 6.32092 6.56995 7.40814 8.70145 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.030067 B = 0.005831 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.035869 B = 4801.141909 C = 5119.933667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.089 3.911 3 H 0.031 0.969 4 C -0.096 4.096 5 C 0.013 3.987 6 C -0.619 4.619 7 H 0.049 0.951 8 C -0.039 4.039 9 N -0.937 5.937 10 Si 1.119 2.881 11 H -0.272 1.272 12 H -0.269 1.269 13 H -0.282 1.282 14 N -0.651 5.651 15 C 0.020 3.980 16 H 0.114 0.886 17 C -0.206 4.206 18 C -0.097 4.097 19 H 0.120 0.880 20 C -0.122 4.122 21 C -0.168 4.168 22 C -0.176 4.176 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.053 0.947 28 H -0.006 1.006 29 H -0.019 1.019 30 H 0.254 0.746 31 H 0.335 0.665 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.108 0.382 11.657 16.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.021 4.021 3 H 0.049 0.951 4 C -0.134 4.134 5 C -0.025 4.025 6 C -0.657 4.657 7 H 0.067 0.933 8 C -0.236 4.236 9 N -0.575 5.575 10 Si 0.941 3.059 11 H -0.198 1.198 12 H -0.194 1.194 13 H -0.208 1.208 14 N -0.282 5.282 15 C -0.091 4.091 16 H 0.131 0.869 17 C -0.245 4.245 18 C -0.116 4.116 19 H 0.137 0.863 20 C -0.141 4.141 21 C -0.205 4.205 22 C -0.213 4.213 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.012 0.988 29 H -0.001 1.001 30 H 0.064 0.936 31 H 0.156 0.844 32 H 0.096 0.904 33 H 0.126 0.874 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.389 -0.257 10.957 15.101 hybrid contribution -0.201 0.995 0.602 1.180 sum -10.590 0.738 11.558 15.693 Atomic orbital electron populations 1.21684 0.92903 1.02102 1.01569 1.21579 0.96621 0.94929 0.88947 0.95084 1.21543 0.95382 0.99882 0.96582 1.19159 0.93785 0.94029 0.95483 1.22527 0.95076 1.37771 1.10306 0.93307 1.27430 0.94248 0.96769 1.05151 1.70901 1.37728 1.34813 1.14057 0.82907 0.75658 0.75607 0.71768 1.19781 1.19406 1.20781 1.60408 1.32654 1.31238 1.03906 1.22636 1.01446 0.96326 0.88709 0.86868 1.23513 0.91819 1.03311 1.05869 1.22016 0.99129 0.93769 0.96660 0.86254 1.21435 1.02030 0.93346 0.97266 1.22887 0.91276 1.02761 1.03569 1.23036 1.02010 1.02494 0.93755 0.92012 0.91930 0.92554 0.92411 0.92820 0.98806 1.00089 0.93626 0.84428 0.90413 0.87420 0.89969 0.88181 0.89084 0.88740 0.87866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.47 9.42 71.98 0.68 -2.80 16 2 C 0.09 3.05 2.55 44.91 0.11 3.17 16 3 H 0.03 1.11 7.73 -2.39 -0.02 1.09 16 4 C -0.10 -4.03 4.74 30.59 0.15 -3.89 16 5 C 0.01 0.66 4.11 29.85 0.12 0.78 16 6 C -0.62 -36.07 9.11 25.60 0.23 -35.83 16 7 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 8 C -0.04 -2.28 5.46 84.65 0.46 -1.82 16 9 N -0.94 -58.96 13.65 21.45 0.29 -58.66 16 10 Si 1.12 51.11 29.90 68.60 2.05 53.16 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 13 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 14 N -0.65 -21.85 5.77 -469.48 -2.71 -24.56 16 15 C 0.02 0.56 6.00 44.92 0.27 0.83 16 16 H 0.11 2.97 7.77 -2.39 -0.02 2.95 16 17 C -0.21 -5.56 9.95 30.59 0.30 -5.26 16 18 C -0.10 -2.34 5.85 -10.79 -0.06 -2.40 16 19 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 20 C -0.12 -3.07 5.41 -10.79 -0.06 -3.13 16 21 C -0.17 -3.56 10.25 30.61 0.31 -3.24 16 22 C -0.18 -3.55 10.25 30.61 0.31 -3.24 16 23 H 0.06 1.53 8.07 -2.39 -0.02 1.51 16 24 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 25 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 26 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 28 H -0.01 -0.34 6.29 -2.39 -0.02 -0.35 16 29 H -0.02 -1.08 8.01 -2.39 -0.02 -1.10 16 30 H 0.25 16.19 7.22 -92.70 -0.67 15.52 16 31 H 0.34 13.02 6.26 -89.70 -0.56 12.46 16 32 H 0.08 2.39 8.09 -2.38 -0.02 2.37 16 33 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.08 2.49 7.87 -2.39 -0.02 2.47 16 35 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -63.87 310.22 3.01 -60.86 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: 0.54 Total: 26.04 kcal Atomic # 6 Polarization: -59.66 SS G_CDS: 2.84 Total: -56.83 kcal Atomic # 7 Polarization: -80.81 SS G_CDS: -2.42 Total: -83.22 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 2.05 Total: 53.16 kcal Total: -63.87 3.01 -60.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487299.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.101 kcal (2) G-P(sol) polarization free energy of solvation -63.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds