Wall clock time and date at job start Sun Mar 29 2020 21:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46881 * 2 1 4 4 C 1.52997 * 109.47504 * 120.00361 * 2 1 3 5 5 C 1.53000 * 109.47060 * 185.00270 * 4 2 1 6 6 C 1.50703 * 109.46912 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99776 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00001 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00114 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99955 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46999 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46979 * 120.00420 * 10 8 6 13 13 H 1.48498 * 109.46942 * 240.00334 * 10 8 6 14 14 N 1.46905 * 109.47170 * 240.00659 * 2 1 3 15 15 C 1.46897 * 111.00060 * 84.99377 * 14 2 1 16 16 H 1.08998 * 115.55862 * 350.58742 * 15 14 2 17 17 C 1.53125 * 117.51028 * 136.31848 * 15 14 2 18 18 C 1.52459 * 117.51178 * 204.84588 * 15 14 2 19 19 C 1.53257 * 128.58048 * 134.95790 * 18 15 14 20 20 C 1.53899 * 86.88143 * 194.88669 * 19 18 15 21 21 C 1.53249 * 128.58670 * 10.16019 * 18 15 14 22 22 H 1.09002 * 109.47016 * 299.99380 * 1 2 3 23 23 H 1.09000 * 109.47400 * 59.99781 * 1 2 3 24 24 H 1.09004 * 109.46881 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 26 26 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 27 27 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 28 28 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 29 29 H 0.97000 * 120.00354 * 180.02562 * 9 8 6 30 30 H 1.00897 * 110.99884 * 321.04390 * 14 2 1 31 31 H 1.09002 * 117.51520 * 214.89402 * 17 15 14 32 32 H 1.09000 * 117.51296 * 0.02562 * 17 15 14 33 33 H 1.09006 * 113.64718 * 309.38249 * 19 18 15 34 34 H 1.09001 * 113.65046 * 80.39186 * 19 18 15 35 35 H 1.08991 * 113.58768 * 270.38905 * 20 19 18 36 36 H 1.08998 * 113.65606 * 139.57979 * 20 19 18 37 37 H 1.09000 * 113.64422 * 279.60468 * 21 18 15 38 38 H 1.08998 * 113.65078 * 50.51932 * 21 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6132 1.3135 6 6 4.0672 -1.3232 2.5443 7 1 3.3688 -1.8038 3.2133 8 6 5.4185 -1.3601 2.8156 9 7 6.2691 -0.7753 2.0006 10 14 6.0412 -2.2395 4.3415 11 1 4.8911 -2.8103 5.0877 12 1 6.9628 -3.3329 3.9413 13 1 6.7645 -1.2748 5.2083 14 7 2.0197 -0.6924 -1.1996 15 6 2.0823 0.2228 -2.3469 16 1 1.6209 1.1986 -2.1958 17 6 3.3281 0.1593 -3.2351 18 6 1.9968 -0.3886 -3.7409 19 6 1.1647 0.0787 -4.9401 20 6 1.4475 -1.2985 -5.5660 21 6 1.6416 -1.8267 -4.1337 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7517 -1.7716 1.2054 26 1 1.6054 -0.2618 2.1369 27 1 3.9995 -1.0727 0.4258 28 1 3.8532 0.4370 1.3572 29 1 7.2198 -0.8016 2.1912 30 1 1.4496 -1.4978 -1.4102 31 1 3.6854 1.0933 -3.6688 32 1 4.1006 -0.5618 -2.9681 33 1 0.1133 0.2444 -4.7048 34 1 1.6134 0.9079 -5.4871 35 1 2.3557 -1.3258 -6.1679 36 1 0.5878 -1.7312 -6.0777 37 1 2.4727 -2.5250 -4.0342 38 1 0.7239 -2.1920 -3.6728 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487944.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:01 Heat of formation + Delta-G solvation = 27.787420 kcal Electronic energy + Delta-G solvation = -15299.511484 eV Core-core repulsion = 12949.603281 eV Total energy + Delta-G solvation = -2349.908202 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.48501 -36.65422 -33.67358 -32.57511 -29.86924 -28.21342 -25.66336 -25.00199 -22.98781 -21.57697 -20.78382 -19.78705 -18.13974 -16.09622 -15.77251 -15.40251 -15.19026 -14.38036 -13.99771 -13.23207 -13.18305 -12.46588 -12.36733 -12.32784 -12.11787 -11.77090 -11.51391 -11.33849 -11.24392 -11.10705 -10.83543 -10.41645 -10.28755 -10.20252 -10.04070 -9.60888 -9.41747 -9.12435 -8.83966 -8.19620 -7.70203 -5.85096 -3.86151 3.38324 3.45443 3.49675 3.93913 4.23876 4.56908 4.67250 4.76402 4.84732 4.99416 5.22781 5.41233 5.50307 5.50713 5.56198 5.65136 5.68966 5.74919 5.78605 5.85647 6.00104 6.10695 6.13977 6.29420 6.33678 6.35287 6.41652 6.48778 6.73788 6.92590 7.35947 7.61279 7.85658 7.89427 8.12547 8.27986 8.61531 9.23368 9.76325 11.26023 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.036000 B = 0.005613 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.590244 B = 4987.343771 C = 5398.146294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.085 3.915 3 H 0.073 0.927 4 C -0.098 4.098 5 C 0.029 3.971 6 C -0.517 4.517 7 H 0.051 0.949 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.886 3.114 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.286 1.286 14 N -0.638 5.638 15 C 0.042 3.958 16 H 0.093 0.907 17 C -0.137 4.137 18 C -0.176 4.176 19 C -0.101 4.101 20 C -0.135 4.135 21 C -0.098 4.098 22 H 0.058 0.942 23 H 0.043 0.957 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.032 0.968 28 H 0.007 0.993 29 H 0.257 0.743 30 H 0.336 0.664 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.116 1.339 -12.800 17.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.024 4.024 3 H 0.091 0.909 4 C -0.136 4.136 5 C -0.008 4.008 6 C -0.556 4.556 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.714 3.286 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.212 1.212 14 N -0.267 5.267 15 C -0.068 4.068 16 H 0.110 0.890 17 C -0.175 4.175 18 C -0.177 4.177 19 C -0.139 4.139 20 C -0.173 4.173 21 C -0.135 4.135 22 H 0.077 0.923 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.025 0.975 29 H 0.067 0.933 30 H 0.156 0.844 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.275 1.439 -12.629 16.344 hybrid contribution -0.445 -0.321 0.684 0.877 sum -10.720 1.118 -11.946 16.089 Atomic orbital electron populations 1.22567 0.98607 1.01473 1.01215 1.21811 0.90859 0.98378 0.91372 0.90918 1.21629 1.00681 0.98321 0.93012 1.18997 0.88257 0.96526 0.96998 1.21401 0.91857 1.33890 1.08428 0.93081 1.24998 0.97146 0.95812 0.96491 1.69992 1.02076 1.44491 1.36915 0.86635 0.78815 0.79529 0.83585 1.19886 1.21147 1.21184 1.60209 1.56686 1.08127 1.01697 1.22298 1.01482 0.96532 0.86538 0.88967 1.23059 0.91064 1.01995 1.01361 1.22678 1.02258 0.97132 0.95672 1.22452 0.99112 0.97128 0.95179 1.22709 1.01430 0.96803 0.96345 1.22327 1.01323 0.94490 0.95368 0.92304 0.93745 0.92871 0.93537 0.93484 0.94919 0.97460 0.93334 0.84421 0.89130 0.87792 0.90346 0.91742 0.90254 0.91777 0.91192 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 9.16 37.16 0.34 -2.16 16 2 C 0.09 1.48 2.48 -67.71 -0.17 1.31 16 3 H 0.07 1.32 7.74 -51.93 -0.40 0.92 16 4 C -0.10 -2.09 4.83 -26.73 -0.13 -2.22 16 5 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 6 C -0.52 -15.21 9.11 -34.44 -0.31 -15.53 16 7 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -27.86 13.29 55.43 0.74 -27.12 16 10 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 N -0.64 -10.74 5.95 -99.96 -0.59 -11.34 16 15 C 0.04 0.63 5.96 -67.93 -0.40 0.22 16 16 H 0.09 1.32 7.77 -51.93 -0.40 0.92 16 17 C -0.14 -1.99 10.47 -26.88 -0.28 -2.27 16 18 C -0.18 -2.22 2.99 -154.73 -0.46 -2.68 16 19 C -0.10 -1.05 8.10 -26.13 -0.21 -1.26 16 20 C -0.14 -1.33 8.08 -25.80 -0.21 -1.54 16 21 C -0.10 -1.12 7.60 -26.14 -0.20 -1.32 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.04 0.56 8.07 -51.93 -0.42 0.14 16 24 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.03 0.94 7.75 -51.93 -0.40 0.54 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.34 5.23 7.98 -39.29 -0.31 4.91 16 31 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 310.38 15.07 4.68 4.68 Total: -1.00 -30.84 310.38 -9.45 -40.29 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -6.98 Total: 1.43 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: -2.27 Total: -25.23 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.14 Total: -38.46 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.84 -9.45 -40.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487944.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.075 kcal (2) G-P(sol) polarization free energy of solvation -30.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds